Wall clock time and date at job start Tue Mar 31 2020 20:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34748 * 117.00005 * 2 1 4 4 O 1.21504 * 120.00183 * 359.97438 * 3 2 1 5 5 C 1.47407 * 120.00242 * 180.27568 * 3 2 1 6 6 C 1.39981 * 120.19627 * 269.72604 * 5 3 2 7 7 F 1.35104 * 120.09753 * 0.02668 * 6 5 3 8 8 C 1.38187 * 119.80294 * 179.97438 * 6 5 3 9 9 C 1.38333 * 120.19665 * 0.02562 * 8 6 5 10 10 C 1.38293 * 120.39392 * 359.96052 * 9 8 6 11 11 C 1.50698 * 119.89892 * 180.02562 * 10 9 8 12 12 N 1.46904 * 109.47073 * 254.83748 * 11 10 9 13 13 C 1.46904 * 110.99740 * 75.55695 * 12 11 10 14 14 C 1.50706 * 109.46869 * 190.00171 * 13 12 11 15 15 H 1.08000 * 120.00376 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99925 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99854 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00033 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46900 * 90.00643 * 18 16 14 20 20 H 1.48500 * 109.47253 * 210.00168 * 18 16 14 21 21 H 1.48495 * 109.47143 * 330.00083 * 18 16 14 22 22 C 1.46899 * 111.00152 * 199.50672 * 12 11 10 23 23 C 1.52998 * 109.46917 * 75.83048 * 22 12 11 24 24 C 1.47200 * 109.47367 * 174.87165 * 23 22 12 25 25 N 9.26678 * 117.99402 * 285.57167 * 2 1 3 26 26 C 1.38233 * 120.19888 * 359.75938 * 10 9 8 27 27 F 1.35094 * 120.10291 * 180.25801 * 26 10 9 28 28 H 1.09004 * 109.46975 * 60.00069 * 1 2 3 29 29 H 1.08999 * 109.47083 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47080 * 300.00040 * 1 2 3 31 31 H 1.07997 * 119.90391 * 180.02562 * 8 6 5 32 32 H 1.07997 * 119.80587 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.47572 * 14.83661 * 11 10 9 34 34 H 1.08998 * 109.47243 * 134.84193 * 11 10 9 35 35 H 1.09006 * 109.47351 * 309.99854 * 13 12 11 36 36 H 1.08997 * 109.47566 * 69.99964 * 13 12 11 37 37 H 0.96999 * 119.99979 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.46915 * 195.82270 * 22 12 11 39 39 H 1.08991 * 109.47389 * 315.82567 * 22 12 11 40 40 H 1.09002 * 109.46813 * 294.86357 * 23 22 12 41 41 H 1.09001 * 109.47532 * 54.86362 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5358 1.2778 -0.0061 6 6 4.2437 1.3178 1.2008 7 9 3.5799 1.2853 2.3770 8 6 5.6237 1.3897 1.1855 9 6 6.3054 1.4226 -0.0177 10 6 5.6142 1.3832 -1.2148 11 6 6.3682 1.4190 -2.5191 12 7 6.2303 2.7488 -3.1280 13 6 7.0778 3.7327 -2.4411 14 6 6.7318 5.1178 -2.9240 15 1 5.9599 5.2535 -3.6671 16 6 7.4006 6.2117 -2.4171 17 7 8.3410 6.0464 -1.5125 18 14 6.9723 7.9284 -3.0161 19 1 5.9014 8.4985 -2.1598 20 1 8.1773 8.7932 -2.9431 21 1 6.4978 7.8582 -4.4214 22 6 6.5341 2.7041 -4.5646 23 6 5.3580 2.0762 -5.3152 24 6 5.6087 2.1430 -6.7641 25 7 5.8016 2.1965 -7.8822 26 6 4.2341 1.3054 -1.2186 27 9 3.5611 1.2618 -2.3892 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 6.1715 1.4202 2.1157 32 1 7.3839 1.4791 -0.0222 33 1 7.4222 1.2112 -2.3354 34 1 5.9618 0.6663 -3.1946 35 1 6.9091 3.6701 -1.3660 36 1 8.1255 3.5238 -2.6572 37 1 8.8118 6.8159 -1.1561 38 1 6.7008 3.7166 -4.9323 39 1 7.4304 2.1060 -4.7280 40 1 5.2487 1.0346 -5.0131 41 1 4.4438 2.6208 -5.0791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250430622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:38 Heat of formation + Delta-G solvation = -113.186162 kcal Electronic energy + Delta-G solvation = -29272.282066 eV Core-core repulsion = 24788.969461 eV Total energy + Delta-G solvation = -4483.312605 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.17701 -48.97015 -40.52502 -39.04659 -37.36497 -36.54800 -36.05903 -32.81458 -32.29683 -31.30189 -30.26680 -27.96914 -27.30453 -25.17141 -24.49583 -23.16752 -22.35419 -21.14487 -20.16755 -18.37858 -17.93012 -17.64281 -17.25157 -17.15365 -16.49206 -16.10746 -15.97294 -15.65986 -15.42799 -15.33687 -14.74394 -14.65830 -14.45177 -14.33712 -13.85516 -13.67222 -13.37481 -13.29681 -13.07846 -12.50009 -12.47535 -12.36711 -12.16466 -12.05073 -11.87485 -11.78827 -11.67948 -11.28442 -11.06009 -10.98412 -10.77508 -10.71992 -10.65071 -10.38486 -9.99138 -9.33383 -9.15762 -8.64496 -8.51852 -7.56729 -6.11887 -4.12858 0.65811 0.92179 1.86552 2.45371 2.95369 3.00242 3.18971 3.29609 3.36252 3.39470 3.65624 4.15704 4.29941 4.38346 4.42633 4.60636 4.63666 4.86986 4.91302 5.00104 5.09745 5.23956 5.26738 5.31532 5.38144 5.49660 5.53717 5.66097 5.74959 5.82361 5.89252 5.93047 6.07742 6.19421 6.22366 6.46839 6.59211 7.04526 7.13500 7.46749 7.64905 7.77336 7.85891 7.99925 8.35373 8.93744 9.52318 10.98765 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008882 B = 0.004144 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.772049 B = 6755.695007 C = 8240.151085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.349 6.349 3 C 0.522 3.478 4 O -0.478 6.478 5 C -0.188 4.188 6 C 0.160 3.840 7 F -0.127 7.127 8 C -0.160 4.160 9 C -0.026 4.026 10 C -0.103 4.103 11 C 0.087 3.913 12 N -0.531 5.531 13 C 0.193 3.807 14 C -0.512 4.512 15 H 0.065 0.935 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.067 3.933 23 C -0.028 4.028 24 C 0.219 3.781 25 N -0.456 5.456 26 C 0.195 3.805 27 F -0.114 7.114 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.037 0.963 36 H -0.004 1.004 37 H 0.262 0.738 38 H 0.099 0.901 39 H 0.034 0.966 40 H 0.100 0.900 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 -15.681 5.828 18.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.266 6.266 3 C 0.363 3.637 4 O -0.363 6.363 5 C -0.191 4.191 6 C 0.140 3.860 7 F -0.105 7.105 8 C -0.179 4.179 9 C -0.045 4.045 10 C -0.105 4.105 11 C -0.041 4.041 12 N -0.255 5.255 13 C 0.069 3.931 14 C -0.550 4.550 15 H 0.083 0.917 16 C -0.142 4.142 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.063 4.063 23 C -0.069 4.069 24 C -0.099 4.099 25 N -0.133 5.133 26 C 0.174 3.826 27 F -0.092 7.092 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.014 0.986 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.052 0.948 40 H 0.118 0.882 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.154 -15.039 4.301 17.640 hybrid contribution 0.046 0.938 0.283 0.981 sum -8.108 -14.101 4.584 16.899 Atomic orbital electron populations 1.23346 0.75827 1.03922 1.02897 1.86653 1.23710 1.32284 1.83904 1.20678 0.88267 0.81996 0.72735 1.90907 1.66177 1.35982 1.43279 1.18875 0.90401 1.16384 0.93489 1.17147 0.89907 0.99881 0.79083 1.91541 1.80987 1.93414 1.44599 1.21073 0.91182 1.05079 1.00589 1.21079 1.01257 0.92324 0.89790 1.19900 0.91045 1.02055 0.97458 1.21020 0.97637 0.93878 0.91555 1.62065 1.57859 1.04221 1.01359 1.19817 0.89464 0.89321 0.94537 1.21121 1.19797 0.90320 1.23770 0.91696 1.24928 0.94960 0.99263 0.95048 1.69929 1.23942 1.30725 1.28955 0.86551 0.77840 0.84085 0.79319 1.20556 1.21327 1.19809 1.21889 0.93139 1.02495 0.88773 1.19433 1.02873 1.03955 0.80633 1.29339 0.92717 0.92521 0.95280 1.81162 1.09313 1.09567 1.13276 1.16880 0.89069 0.97397 0.79245 1.91543 1.80025 1.92767 1.44816 0.91512 0.87773 0.91663 0.83165 0.83117 0.92968 0.90160 0.94514 0.98639 0.92857 0.88259 0.94753 0.88241 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 101.05 1.07 1.37 16 2 O -0.35 -4.46 10.58 -40.62 -0.43 -4.89 16 3 C 0.52 8.03 6.68 34.46 0.23 8.26 16 4 O -0.48 -8.60 16.90 -19.27 -0.33 -8.93 16 5 C -0.19 -2.79 5.76 -104.87 -0.60 -3.40 16 6 C 0.16 2.16 7.29 -38.95 -0.28 1.87 16 7 F -0.13 -1.73 16.83 2.25 0.04 -1.69 16 8 C -0.16 -1.85 10.01 -39.57 -0.40 -2.25 16 9 C -0.03 -0.31 8.98 -39.53 -0.35 -0.67 16 10 C -0.10 -1.40 4.81 -104.60 -0.50 -1.91 16 11 C 0.09 1.17 4.62 -4.97 -0.02 1.15 16 12 N -0.53 -9.14 4.35 -237.52 -1.03 -10.18 16 13 C 0.19 4.28 4.55 -4.97 -0.02 4.26 16 14 C -0.51 -13.06 8.23 -34.44 -0.28 -13.35 16 15 H 0.06 1.65 7.31 -52.49 -0.38 1.27 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -24.82 13.29 55.43 0.74 -24.08 16 18 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 22 C 0.07 1.02 4.75 -3.83 -0.02 1.01 16 23 C -0.03 -0.35 5.75 -29.52 -0.17 -0.52 16 24 C 0.22 3.13 15.43 -20.76 -0.32 2.81 16 25 N -0.46 -7.66 18.54 42.15 0.78 -6.87 16 26 C 0.19 2.84 7.23 -38.94 -0.28 2.56 16 27 F -0.11 -1.68 16.31 2.25 0.04 -1.64 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.15 1.56 7.99 -52.49 -0.42 1.14 16 33 H 0.05 0.66 7.80 -51.93 -0.41 0.25 16 34 H 0.08 0.88 6.50 -51.93 -0.34 0.54 16 35 H 0.04 0.87 6.87 -51.93 -0.36 0.51 16 36 H 0.00 -0.10 8.12 -51.93 -0.42 -0.52 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.10 1.80 6.57 -51.93 -0.34 1.46 16 39 H 0.03 0.49 8.00 -51.93 -0.42 0.07 16 40 H 0.10 0.97 6.90 -51.93 -0.36 0.61 16 41 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 372.74 15.07 5.62 5.62 Total: -1.00 -31.75 372.74 -6.35 -38.09 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -4.69 Total: -4.05 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.06 Total: 2.70 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.49 Total: -41.13 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.76 Total: -13.82 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.33 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.75 -6.35 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250430622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.094 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds