Wall clock time and date at job start Tue Mar 31 2020 20:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34748 * 117.00005 * 2 1 4 4 O 1.21504 * 120.00183 * 359.97438 * 3 2 1 5 5 C 1.47407 * 120.00242 * 180.27568 * 3 2 1 6 6 C 1.39981 * 120.19627 * 269.72604 * 5 3 2 7 7 F 1.35104 * 120.09753 * 0.02668 * 6 5 3 8 8 C 1.38187 * 119.80294 * 179.97438 * 6 5 3 9 9 C 1.38333 * 120.19665 * 0.02562 * 8 6 5 10 10 C 1.38293 * 120.39392 * 359.96052 * 9 8 6 11 11 C 1.50698 * 119.89892 * 180.02562 * 10 9 8 12 12 N 1.46904 * 109.47073 * 254.83748 * 11 10 9 13 13 C 1.46904 * 110.99740 * 75.55695 * 12 11 10 14 14 C 1.50706 * 109.46869 * 190.00171 * 13 12 11 15 15 H 1.08000 * 120.00376 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99925 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99854 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00033 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46900 * 90.00643 * 18 16 14 20 20 H 1.48500 * 109.47253 * 210.00168 * 18 16 14 21 21 H 1.48495 * 109.47143 * 330.00083 * 18 16 14 22 22 C 1.46899 * 111.00152 * 199.50672 * 12 11 10 23 23 C 1.52998 * 109.46917 * 75.83048 * 22 12 11 24 24 C 1.47200 * 109.47367 * 174.87165 * 23 22 12 25 25 N 9.26678 * 117.99402 * 285.57167 * 2 1 3 26 26 C 1.38233 * 120.19888 * 359.75938 * 10 9 8 27 27 F 1.35094 * 120.10291 * 180.25801 * 26 10 9 28 28 H 1.09004 * 109.46975 * 60.00069 * 1 2 3 29 29 H 1.08999 * 109.47083 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47080 * 300.00040 * 1 2 3 31 31 H 1.07997 * 119.90391 * 180.02562 * 8 6 5 32 32 H 1.07997 * 119.80587 * 179.97438 * 9 8 6 33 33 H 1.08996 * 109.47572 * 14.83661 * 11 10 9 34 34 H 1.08998 * 109.47243 * 134.84193 * 11 10 9 35 35 H 1.09006 * 109.47351 * 309.99854 * 13 12 11 36 36 H 1.08997 * 109.47566 * 69.99964 * 13 12 11 37 37 H 0.96999 * 119.99979 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.46915 * 195.82270 * 22 12 11 39 39 H 1.08991 * 109.47389 * 315.82567 * 22 12 11 40 40 H 1.09002 * 109.46813 * 294.86357 * 23 22 12 41 41 H 1.09001 * 109.47532 * 54.86362 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 -0.0005 5 6 3.5358 1.2778 -0.0061 6 6 4.2437 1.3178 1.2008 7 9 3.5799 1.2853 2.3770 8 6 5.6237 1.3897 1.1855 9 6 6.3054 1.4226 -0.0177 10 6 5.6142 1.3832 -1.2148 11 6 6.3682 1.4190 -2.5191 12 7 6.2303 2.7488 -3.1280 13 6 7.0778 3.7327 -2.4411 14 6 6.7318 5.1178 -2.9240 15 1 5.9599 5.2535 -3.6671 16 6 7.4006 6.2117 -2.4171 17 7 8.3410 6.0464 -1.5125 18 14 6.9723 7.9284 -3.0161 19 1 5.9014 8.4985 -2.1598 20 1 8.1773 8.7932 -2.9431 21 1 6.4978 7.8582 -4.4214 22 6 6.5341 2.7041 -4.5646 23 6 5.3580 2.0762 -5.3152 24 6 5.6087 2.1430 -6.7641 25 7 5.8016 2.1965 -7.8822 26 6 4.2341 1.3054 -1.2186 27 9 3.5611 1.2618 -2.3892 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 6.1715 1.4202 2.1157 32 1 7.3839 1.4791 -0.0222 33 1 7.4222 1.2112 -2.3354 34 1 5.9618 0.6663 -3.1946 35 1 6.9091 3.6701 -1.3660 36 1 8.1255 3.5238 -2.6572 37 1 8.8118 6.8159 -1.1561 38 1 6.7008 3.7166 -4.9323 39 1 7.4304 2.1060 -4.7280 40 1 5.2487 1.0346 -5.0131 41 1 4.4438 2.6208 -5.0791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250430622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:37 Heat of formation + Delta-G solvation = -131.234896 kcal Electronic energy + Delta-G solvation = -29273.064718 eV Core-core repulsion = 24788.969461 eV Total energy + Delta-G solvation = -4484.095257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.22270 -50.06170 -41.62892 -40.11900 -38.59408 -37.66108 -37.32679 -34.71686 -33.39247 -32.34594 -31.58406 -28.94747 -28.72555 -26.44318 -25.52206 -24.77195 -23.44251 -22.29990 -21.46352 -19.44483 -19.02053 -18.75147 -18.46955 -18.33522 -18.14314 -17.13440 -17.05724 -16.80059 -16.56399 -16.49322 -16.33069 -15.99495 -15.47993 -15.44021 -15.07811 -14.83093 -14.62660 -14.34873 -14.23755 -13.98345 -13.76644 -13.44436 -13.34478 -13.31726 -13.09171 -12.93762 -12.84539 -12.71485 -12.55534 -12.41025 -12.20810 -11.93927 -11.90194 -11.78493 -11.55354 -11.18264 -10.52580 -10.18749 -9.69272 -8.96539 -8.13637 -6.18230 -0.37437 -0.09478 0.70779 1.42376 1.45282 1.47224 1.52789 1.78459 1.85875 2.16801 2.44864 2.62277 3.00707 3.21715 3.27387 3.43612 3.55934 3.64505 3.76976 4.03757 4.20027 4.23207 4.28068 4.31367 4.39112 4.53988 4.61666 4.66739 4.76359 4.78937 4.92510 4.93902 5.04973 5.07395 5.13367 5.23421 5.39628 5.44479 5.60450 5.74792 6.15836 6.36451 6.36811 6.62206 6.69909 6.97422 7.49951 8.96312 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008882 B = 0.004144 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.772049 B = 6755.695007 C = 8240.151085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.349 6.349 3 C 0.524 3.476 4 O -0.516 6.516 5 C -0.208 4.208 6 C 0.150 3.850 7 F -0.130 7.130 8 C -0.148 4.148 9 C -0.025 4.025 10 C -0.111 4.111 11 C 0.085 3.915 12 N -0.538 5.538 13 C 0.209 3.791 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.013 3.987 17 N -0.925 5.925 18 Si 0.945 3.055 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.270 1.270 22 C 0.068 3.932 23 C -0.014 4.014 24 C 0.243 3.757 25 N -0.500 5.500 26 C 0.183 3.817 27 F -0.118 7.118 28 H 0.065 0.935 29 H 0.142 0.858 30 H 0.066 0.934 31 H 0.181 0.819 32 H 0.171 0.829 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.023 0.977 36 H -0.023 1.023 37 H 0.261 0.739 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.137 0.863 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.952 -17.165 6.080 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.265 6.265 3 C 0.366 3.634 4 O -0.404 6.404 5 C -0.211 4.211 6 C 0.130 3.870 7 F -0.109 7.109 8 C -0.166 4.166 9 C -0.043 4.043 10 C -0.112 4.112 11 C -0.042 4.042 12 N -0.262 5.262 13 C 0.084 3.916 14 C -0.556 4.556 15 H 0.078 0.922 16 C -0.186 4.186 17 N -0.566 5.566 18 Si 0.771 3.229 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.195 1.195 22 C -0.061 4.061 23 C -0.055 4.055 24 C -0.074 4.074 25 N -0.178 5.178 26 C 0.162 3.838 27 F -0.096 7.096 28 H 0.084 0.916 29 H 0.160 0.840 30 H 0.084 0.916 31 H 0.198 0.802 32 H 0.188 0.812 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.041 0.959 36 H -0.006 1.006 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.154 0.846 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.332 -16.558 4.539 19.084 hybrid contribution 0.046 1.313 0.247 1.337 sum -8.286 -15.245 4.787 17.999 Atomic orbital electron populations 1.23732 0.73723 1.06471 1.02952 1.86649 1.25799 1.30898 1.83109 1.20885 0.88628 0.82143 0.71702 1.90879 1.67008 1.37185 1.45326 1.19059 0.90359 1.17411 0.94276 1.17355 0.90643 1.00324 0.78645 1.91530 1.81214 1.93491 1.44651 1.21398 0.90375 1.03096 1.01754 1.21387 1.02247 0.91247 0.89442 1.20027 0.90690 1.02341 0.98173 1.21169 0.98779 0.92219 0.92001 1.61880 1.56673 1.05592 1.02056 1.19418 0.88978 0.89281 0.93973 1.21515 1.18936 0.92218 1.22979 0.92245 1.25583 0.95231 1.02303 0.95489 1.70011 1.25036 1.31359 1.30200 0.85753 0.77457 0.80772 0.78871 1.20679 1.21120 1.19465 1.21807 0.95152 1.01256 0.87925 1.19415 1.01375 1.05871 0.78793 1.29572 0.91398 0.91063 0.95350 1.81190 1.10686 1.11238 1.14735 1.16996 0.89474 0.98248 0.79059 1.91519 1.80214 1.92940 1.44946 0.91597 0.83966 0.91565 0.80203 0.81195 0.91578 0.87114 0.95912 1.00575 0.92977 0.91567 0.93326 0.84573 0.86168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.57 113.37 1.20 1.59 16 2 O -0.35 -8.62 10.58 -56.58 -0.60 -9.22 16 3 C 0.52 16.05 6.68 70.24 0.47 16.51 16 4 O -0.52 -18.81 16.90 19.82 0.33 -18.48 16 5 C -0.21 -6.04 5.76 -20.03 -0.12 -6.16 16 6 C 0.15 3.89 7.29 22.68 0.17 4.06 16 7 F -0.13 -3.45 16.83 44.97 0.76 -2.69 16 8 C -0.15 -3.09 10.01 22.28 0.22 -2.87 16 9 C -0.02 -0.54 8.98 22.31 0.20 -0.34 16 10 C -0.11 -2.80 4.81 -19.85 -0.10 -2.90 16 11 C 0.09 2.07 4.62 85.56 0.40 2.47 16 12 N -0.54 -17.72 4.35 -905.36 -3.93 -21.66 16 13 C 0.21 9.20 4.55 85.56 0.39 9.59 16 14 C -0.52 -26.50 8.23 25.60 0.21 -26.29 16 15 H 0.06 3.04 7.31 -2.91 -0.02 3.02 16 16 C 0.01 0.67 5.46 84.65 0.46 1.13 16 17 N -0.93 -51.47 13.29 21.45 0.28 -51.18 16 18 Si 0.94 43.08 29.54 68.60 2.03 45.10 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.07 1.98 4.75 86.30 0.41 2.39 16 23 C -0.01 -0.31 5.75 28.79 0.17 -0.15 16 24 C 0.24 6.53 15.43 89.44 1.38 7.91 16 25 N -0.50 -16.34 18.54 20.00 0.37 -15.97 16 26 C 0.18 5.12 7.23 22.68 0.16 5.28 16 27 F -0.12 -3.33 16.31 44.97 0.73 -2.59 16 28 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.17 3.04 7.99 -2.91 -0.02 3.02 16 33 H 0.07 1.46 7.80 -2.39 -0.02 1.44 16 34 H 0.11 2.00 6.50 -2.39 -0.02 1.98 16 35 H 0.02 1.07 6.87 -2.38 -0.02 1.05 16 36 H -0.02 -1.11 8.12 -2.39 -0.02 -1.13 16 37 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 38 H 0.07 2.38 6.57 -2.39 -0.02 2.37 16 39 H 0.05 1.28 8.00 -2.39 -0.02 1.26 16 40 H 0.14 2.07 6.90 -2.39 -0.02 2.05 16 41 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -69.75 372.74 6.68 -63.07 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: 1.08 Total: 1.39 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 5.62 Total: 12.23 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -3.28 Total: -88.81 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.26 Total: -27.69 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 1.49 Total: -5.28 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.75 6.68 -63.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250430622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.167 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds