Wall clock time and date at job start Tue Mar 31 2020 21:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34763 * 116.99747 * 2 1 4 4 O 1.21537 * 120.00653 * 0.02562 * 3 2 1 5 5 C 1.47234 * 119.99834 * 180.02562 * 3 2 1 6 6 C 1.47065 * 127.19911 * 359.97438 * 5 3 2 7 7 C 1.34159 * 105.94464 * 179.97438 * 6 5 3 8 8 C 1.50706 * 125.42344 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46949 * 90.00098 * 8 7 6 10 10 C 1.34769 * 120.00237 * 180.02562 * 9 8 7 11 11 O 1.21353 * 120.00161 * 359.97438 * 10 9 8 12 12 C 1.49452 * 120.00161 * 180.02562 * 10 9 8 13 13 O 1.21346 * 120.00041 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00089 * 179.97438 * 12 10 9 15 15 C 1.46500 * 120.00165 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.46993 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.46861 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00370 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99790 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00257 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99910 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46950 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47438 * 119.99721 * 21 19 17 24 24 H 1.48500 * 109.46931 * 240.00169 * 21 19 17 25 25 O 1.34214 * 109.14934 * 0.24147 * 7 6 5 26 26 C 1.33628 * 110.92493 * 359.58433 * 25 7 6 27 27 C 1.50700 * 125.81051 * 180.13374 * 26 25 7 28 28 H 1.09004 * 109.47502 * 59.99723 * 1 2 3 29 29 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46743 * 299.99570 * 1 2 3 31 31 H 1.07991 * 127.02546 * 359.95918 * 6 5 3 32 32 H 1.09000 * 109.47318 * 209.99484 * 8 7 6 33 33 H 1.09000 * 109.47161 * 330.00115 * 8 7 6 34 34 H 0.97010 * 119.99909 * 359.97438 * 9 8 7 35 35 H 0.97004 * 119.99471 * 359.97438 * 14 12 10 36 36 H 1.09004 * 109.47042 * 299.99804 * 15 14 12 37 37 H 1.09000 * 109.47175 * 59.99845 * 15 14 12 38 38 H 1.08996 * 109.47452 * 300.00215 * 16 15 14 39 39 H 1.09000 * 109.47054 * 60.00055 * 16 15 14 40 40 H 0.97002 * 120.00075 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.46758 * 270.32719 * 27 26 25 42 42 H 1.08995 * 109.46882 * 30.32647 * 27 26 25 43 43 H 1.09003 * 109.46931 * 150.32914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 0.0005 5 6 3.5341 1.2778 -0.0006 6 6 4.4833 0.1546 -0.0007 7 6 5.7065 0.7057 -0.0018 8 6 7.0074 -0.0551 -0.0018 9 7 7.4282 -0.3029 -1.3830 10 6 8.5715 -0.9725 -1.6294 11 8 9.2528 -1.3698 -0.7071 12 6 9.0010 -1.2248 -3.0384 13 8 8.3201 -0.8271 -3.9607 14 7 10.1447 -1.8940 -3.2848 15 6 10.5655 -2.1418 -4.6660 16 6 11.8865 -2.9136 -4.6660 17 6 12.3196 -3.1679 -6.0868 18 1 11.7132 -2.8148 -6.9077 19 6 13.4897 -3.8525 -6.3388 20 7 14.2280 -4.2829 -5.3392 21 14 14.0270 -4.1671 -8.1000 22 1 13.0296 -3.5846 -9.0333 23 1 15.3513 -3.5371 -8.3336 24 1 14.1268 -5.6303 -8.3331 25 8 5.5870 2.0425 0.0029 26 6 4.3014 2.4068 -0.0018 27 6 3.7862 3.8230 -0.0015 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 4.2445 -0.8986 0.0003 32 1 7.7707 0.5302 0.5110 33 1 6.8720 -1.0063 0.5130 34 1 6.8834 0.0143 -2.1204 35 1 10.6892 -2.2115 -2.5474 36 1 9.8023 -2.7271 -5.1789 37 1 10.7009 -1.1906 -5.1808 38 1 12.6495 -2.3280 -4.1532 39 1 11.7515 -3.8648 -4.1511 40 1 15.0514 -4.7642 -5.5165 41 1 3.6633 4.1646 1.0262 42 1 4.4977 4.4685 -0.5164 43 1 2.8250 3.8600 -0.5142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257207282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:00 Heat of formation + Delta-G solvation = -171.966551 kcal Electronic energy + Delta-G solvation = -27398.096330 eV Core-core repulsion = 23023.322332 eV Total energy + Delta-G solvation = -4374.773998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.89866 -41.69917 -41.22512 -39.66972 -37.58547 -37.03227 -36.26843 -34.81775 -34.35379 -33.16152 -31.68979 -30.13731 -28.81258 -27.46540 -26.35724 -24.88165 -24.19716 -22.80379 -22.60043 -21.56025 -20.79082 -19.89804 -18.73052 -18.58219 -18.08472 -17.68031 -17.64399 -17.20084 -17.12203 -16.87400 -16.51711 -16.43452 -16.04331 -15.95708 -15.13187 -14.95387 -14.74299 -14.45234 -14.31368 -14.30294 -14.27202 -13.98104 -13.83531 -13.61268 -13.24252 -13.03684 -12.95698 -12.87856 -12.73757 -12.50797 -12.28400 -11.83764 -11.72580 -11.68037 -11.41371 -11.09500 -10.78149 -10.61367 -10.48230 -10.19449 -9.76310 -8.22768 -6.33597 -0.04640 0.29844 0.50734 1.29155 1.42948 1.43577 1.49150 1.57281 1.77112 1.87913 2.10271 2.40849 2.70827 3.10899 3.12408 3.41930 3.54349 3.73397 3.98485 4.13175 4.28277 4.32212 4.33050 4.40157 4.46680 4.48250 4.55216 4.56392 4.68486 4.76037 4.82884 4.93637 5.04863 5.08708 5.10696 5.29228 5.43780 5.56608 5.75798 5.82502 5.86226 6.14137 6.31048 6.61858 6.64877 6.80240 6.91226 7.35964 8.89312 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.001615 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.720188 B =17330.601388 C =17697.342539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.542 3.458 4 O -0.530 6.530 5 C -0.265 4.265 6 C -0.126 4.126 7 C -0.042 4.042 8 C 0.204 3.796 9 N -0.690 5.690 10 C 0.522 3.478 11 O -0.533 6.533 12 C 0.500 3.500 13 O -0.550 6.550 14 N -0.687 5.687 15 C 0.138 3.862 16 C 0.017 3.983 17 C -0.544 4.544 18 H 0.064 0.936 19 C 0.005 3.995 20 N -0.927 5.927 21 Si 0.967 3.033 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.278 1.278 25 O -0.167 6.167 26 C 0.112 3.888 27 C -0.089 4.089 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.066 0.934 31 H 0.183 0.817 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.420 0.580 35 H 0.416 0.584 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.265 0.735 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.151 12.650 15.471 32.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.389 3.611 4 O -0.422 6.422 5 C -0.267 4.267 6 C -0.145 4.145 7 C -0.090 4.090 8 C 0.082 3.918 9 N -0.345 5.345 10 C 0.303 3.697 11 O -0.409 6.409 12 C 0.281 3.719 13 O -0.428 6.428 14 N -0.338 5.338 15 C 0.015 3.985 16 C -0.020 4.020 17 C -0.582 4.582 18 H 0.082 0.918 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.791 3.209 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.204 1.204 25 O -0.064 6.064 26 C 0.058 3.942 27 C -0.145 4.145 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.085 0.915 31 H 0.200 0.800 32 H 0.119 0.881 33 H 0.145 0.855 34 H 0.257 0.743 35 H 0.252 0.748 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.958 13.000 15.524 32.922 hybrid contribution 0.221 -0.449 -0.788 0.934 sum -25.737 12.551 14.736 32.203 Atomic orbital electron populations 1.23595 0.74044 1.05846 1.02805 1.86559 1.25351 1.31664 1.83899 1.20009 0.87589 0.81623 0.71893 1.90813 1.66945 1.36391 1.48068 1.20305 0.90904 0.94563 1.20955 1.22974 0.89570 1.00603 1.01395 1.21978 0.96848 0.79870 1.10271 1.19879 0.89654 0.99733 0.82498 1.45789 1.22957 1.55551 1.10179 1.19830 0.81998 0.79233 0.88659 1.90785 1.53871 1.50661 1.45603 1.20292 0.82205 0.79680 0.89726 1.90733 1.54198 1.51532 1.46382 1.46059 1.22777 1.54116 1.10893 1.21479 0.97157 0.99770 0.80105 1.19192 0.91125 0.94726 0.96991 1.21484 1.07407 1.36373 0.92982 0.91752 1.25899 0.96513 0.95167 1.01771 1.70076 1.14896 1.38705 1.32997 0.85368 0.78232 0.77912 0.79342 1.18676 1.20426 1.20413 1.83786 1.27277 1.24394 1.70903 1.23396 0.79820 0.97734 0.93225 1.20851 1.02522 0.85144 1.05942 0.91747 0.85124 0.91497 0.79979 0.88135 0.85512 0.74291 0.74779 0.91977 0.92062 0.97303 0.97251 0.92596 0.87211 0.87868 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.49 16 2 O -0.36 -5.87 10.48 -56.73 -0.59 -6.47 16 3 C 0.54 10.25 7.95 70.19 0.56 10.80 16 4 O -0.53 -11.42 14.64 19.72 0.29 -11.13 16 5 C -0.26 -4.59 6.32 -19.00 -0.12 -4.71 16 6 C -0.13 -1.85 10.93 23.66 0.26 -1.59 16 7 C -0.04 -0.62 6.65 24.76 0.16 -0.46 16 8 C 0.20 2.94 6.19 85.63 0.53 3.47 16 9 N -0.69 -13.47 5.54 -468.14 -2.59 -16.06 16 10 C 0.52 13.80 7.89 87.27 0.69 14.49 16 11 O -0.53 -15.82 16.48 -3.26 -0.05 -15.87 16 12 C 0.50 16.13 7.89 87.27 0.69 16.82 16 13 O -0.55 -19.76 16.48 -3.24 -0.05 -19.81 16 14 N -0.69 -24.07 5.55 -464.41 -2.58 -26.65 16 15 C 0.14 5.64 5.61 86.38 0.48 6.13 16 16 C 0.02 0.85 5.09 29.85 0.15 1.01 16 17 C -0.54 -29.73 9.11 25.60 0.23 -29.50 16 18 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 19 C 0.01 0.29 5.46 84.66 0.46 0.75 16 20 N -0.93 -54.24 13.29 21.45 0.28 -53.96 16 21 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 O -0.17 -2.72 10.52 4.69 0.05 -2.67 16 26 C 0.11 1.74 7.38 25.28 0.19 1.93 16 27 C -0.09 -0.91 9.89 71.24 0.70 -0.20 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.18 2.03 8.06 -2.92 -0.02 2.01 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.42 7.89 7.94 -92.70 -0.74 7.16 16 35 H 0.42 13.88 7.94 -92.71 -0.74 13.14 16 36 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 37 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.10 1.26 6.49 -2.39 -0.02 1.24 16 Total: -1.00 -70.31 386.77 2.57 -67.74 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.40 Total: 19.36 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 6.19 Total: 20.43 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -4.89 Total: -96.67 kcal Atomic # 8 Polarization: -55.60 SS G_CDS: -0.36 Total: -55.96 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.31 2.57 -67.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257207282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.230 kcal (2) G-P(sol) polarization free energy of solvation -70.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds