Wall clock time and date at job start Tue Mar 31 2020 20:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86801 * 119.99593 * 2 1 4 4 H 1.48495 * 109.47211 * 269.99876 * 3 2 1 5 5 H 1.48498 * 109.47240 * 30.00159 * 3 2 1 6 6 H 1.48500 * 109.46939 * 150.00013 * 3 2 1 7 7 C 1.38796 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99824 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00247 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00124 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47382 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99987 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00155 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99858 * 179.97438 * 13 11 10 15 15 H 1.09001 * 112.85141 * 336.19758 * 14 13 11 16 16 C 1.53784 * 113.61287 * 107.50217 * 14 13 11 17 17 C 1.53780 * 87.07945 * 89.11630 * 16 14 13 18 18 H 1.09003 * 113.69396 * 270.87427 * 17 16 14 19 19 N 1.46906 * 113.61363 * 139.98002 * 17 16 14 20 20 C 1.46902 * 110.99573 * 107.50333 * 19 17 16 21 21 C 1.50707 * 109.46656 * 179.97438 * 20 19 17 22 22 C 1.38239 * 119.97632 * 269.72223 * 21 20 19 23 23 C 1.38197 * 120.02311 * 179.76778 * 22 21 20 24 24 C 1.38458 * 119.97462 * 0.51271 * 23 22 21 25 25 F 1.35101 * 120.02660 * 179.76508 * 24 23 22 26 26 C 1.38455 * 119.94990 * 359.74442 * 24 23 22 27 27 C 1.38200 * 119.97313 * 359.97438 * 26 24 23 28 28 C 1.53778 * 87.08202 * 25.43327 * 17 16 14 29 29 H 0.96994 * 120.00348 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47297 * 59.99371 * 10 9 7 31 31 H 1.09004 * 109.47196 * 299.99747 * 10 9 7 32 32 H 0.96996 * 120.00098 * 0.02562 * 13 11 10 33 33 H 1.08995 * 113.61536 * 334.57018 * 16 14 13 34 34 H 1.09002 * 113.61652 * 203.66523 * 16 14 13 35 35 H 1.00896 * 111.00309 * 343.54745 * 19 17 16 36 36 H 1.08990 * 109.47358 * 299.99539 * 20 19 17 37 37 H 1.09004 * 109.47457 * 60.00221 * 20 19 17 38 38 H 1.07998 * 119.98684 * 0.02562 * 22 21 20 39 39 H 1.08003 * 120.01117 * 180.25861 * 23 22 21 40 40 H 1.08001 * 120.01728 * 179.97438 * 26 24 23 41 41 H 1.08002 * 119.98791 * 180.02562 * 27 26 24 42 42 H 1.09001 * 113.61879 * 89.11617 * 28 17 16 43 43 H 1.09007 * 113.61564 * 219.93644 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7913 -5.5024 -0.0010 13 7 2.8444 -6.3430 -0.0007 14 6 2.3307 -7.7150 -0.0008 15 1 1.3218 -7.7893 0.4051 16 6 2.5109 -8.4402 -1.3449 17 6 3.8838 -8.8976 -0.8244 18 1 4.6916 -8.2011 -1.0489 19 7 4.2134 -10.2856 -1.1749 20 6 5.2507 -10.3340 -2.2139 21 6 5.5623 -11.7706 -2.5461 22 6 6.5560 -12.4393 -1.8560 23 6 6.8392 -13.7581 -2.1565 24 6 6.1344 -14.4064 -3.1565 25 9 6.4137 -15.6942 -3.4544 26 6 5.1429 -13.7341 -3.8507 27 6 4.8575 -12.4170 -3.5444 28 6 3.3109 -8.7399 0.5940 29 1 -0.4850 0.8400 0.0004 30 1 3.1247 -3.7312 0.8905 31 1 3.1246 -3.7313 -0.8895 32 1 3.8011 -6.1834 -0.0004 33 1 2.5704 -7.7668 -2.1998 34 1 1.8071 -9.2584 -1.4974 35 1 3.3892 -10.7913 -1.4629 36 1 4.8935 -9.8232 -3.1080 37 1 6.1527 -9.8418 -1.8501 38 1 7.1085 -11.9321 -1.0788 39 1 7.6129 -14.2816 -1.6144 40 1 4.5928 -14.2386 -4.6312 41 1 4.0838 -11.8924 -4.0855 42 1 2.8257 -9.6399 0.9716 43 1 4.0166 -8.3096 1.3046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265466519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:42 Heat of formation + Delta-G solvation = -38.427027 kcal Electronic energy + Delta-G solvation = -24595.361870 eV Core-core repulsion = 20681.504241 eV Total energy + Delta-G solvation = -3913.857630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.30960 -40.31062 -39.58622 -38.22727 -35.18464 -32.87902 -32.44489 -31.61354 -30.71988 -28.96462 -25.91461 -25.78472 -25.46988 -23.55528 -23.28613 -21.81426 -20.84572 -19.56889 -18.11875 -17.86904 -16.90973 -16.66243 -16.41274 -16.04596 -15.99328 -15.53336 -15.29787 -14.97572 -14.82096 -14.54021 -14.26169 -14.05984 -13.94911 -13.58541 -13.33490 -13.08562 -12.84382 -12.70667 -12.59424 -12.46923 -12.19477 -11.93255 -11.67001 -11.46118 -11.08104 -11.04387 -10.92439 -10.78178 -10.55259 -9.83320 -9.58602 -9.44569 -9.12869 -9.08662 -8.94006 -8.69616 -8.25970 -6.52178 -6.23456 -3.94276 0.63255 0.76121 2.98725 3.02896 3.05102 3.20953 3.26423 3.30260 3.66709 3.80718 3.86308 4.18619 4.21230 4.22679 4.34979 4.42863 4.48014 4.67984 4.71294 4.78083 4.79428 5.10845 5.11804 5.12341 5.14177 5.41628 5.42847 5.47432 5.53881 5.57252 5.63578 5.65123 5.74180 5.77614 5.78640 5.85922 5.98003 6.04458 6.10896 6.40168 6.55478 6.72387 6.94311 7.57686 7.67320 8.33304 8.57872 9.21888 10.83972 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.001486 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.298136 B =18837.113507 C =19144.724552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.515 6.515 13 N -0.722 5.722 14 C 0.125 3.875 15 H 0.104 0.896 16 C -0.181 4.181 17 C 0.066 3.934 18 H 0.097 0.903 19 N -0.673 5.673 20 C 0.096 3.904 21 C -0.093 4.093 22 C -0.068 4.068 23 C -0.155 4.155 24 C 0.096 3.904 25 F -0.142 7.142 26 C -0.154 4.154 27 C -0.085 4.085 28 C -0.133 4.133 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.345 0.655 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.097 0.903 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.391 -27.346 -5.058 31.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.389 6.389 13 N -0.375 5.375 14 C 0.018 3.982 15 H 0.122 0.878 16 C -0.221 4.221 17 C -0.045 4.045 18 H 0.115 0.885 19 N -0.303 5.303 20 C -0.032 4.032 21 C -0.093 4.093 22 C -0.087 4.087 23 C -0.174 4.174 24 C 0.076 3.924 25 F -0.120 7.120 26 C -0.173 4.173 27 C -0.103 4.103 28 C -0.172 4.172 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.164 0.836 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.115 0.885 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.677 -27.683 -4.546 30.785 hybrid contribution 1.996 1.299 -0.921 2.553 sum 14.673 -26.384 -5.467 30.681 Atomic orbital electron populations 1.70015 1.05956 1.27482 1.46814 1.24990 0.95022 0.99025 0.94504 0.86166 0.79415 0.81565 0.78345 1.20279 1.20726 1.19697 1.22870 0.94913 0.91660 1.59025 0.90921 1.85407 1.04867 0.96320 1.96721 1.23535 1.06625 0.95336 1.04942 1.20341 0.86556 0.86260 0.74797 1.90703 1.15382 1.85528 1.47308 1.45715 1.09698 1.04680 1.77417 1.21602 0.99358 0.81151 0.96097 0.87791 1.24157 0.97872 1.01060 0.99041 1.23150 0.95784 0.88871 0.96654 0.88492 1.60512 1.13900 1.13467 1.42444 1.20925 0.96566 0.91826 0.93886 1.19885 0.96697 0.96429 0.96318 1.20927 0.96468 0.93113 0.98158 1.21188 1.01676 0.95984 0.98525 1.17770 0.97761 0.79208 0.97623 1.91506 1.92910 1.35077 1.92525 1.21134 0.98723 0.95706 1.01716 1.20958 0.98909 0.93650 0.96828 1.23442 0.98311 0.98949 0.96467 0.92163 0.89150 0.89248 0.76835 0.90932 0.89183 0.83593 0.93846 0.89841 0.84766 0.84709 0.84747 0.85134 0.88483 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 11 C 0.53 9.65 7.85 -10.99 -0.09 9.56 16 12 O -0.52 -11.48 15.46 5.55 0.09 -11.39 16 13 N -0.72 -9.04 5.26 -53.02 -0.28 -9.32 16 14 C 0.12 1.36 4.32 -67.12 -0.29 1.06 16 15 H 0.10 1.36 7.47 -51.93 -0.39 0.97 16 16 C -0.18 -1.59 7.49 -25.92 -0.19 -1.79 16 17 C 0.07 0.47 4.06 -66.90 -0.27 0.20 16 18 H 0.10 0.67 7.87 -51.93 -0.41 0.26 16 19 N -0.67 -4.35 6.61 -107.13 -0.71 -5.06 16 20 C 0.10 0.56 5.66 -4.97 -0.03 0.53 16 21 C -0.09 -0.57 5.39 -104.62 -0.56 -1.14 16 22 C -0.07 -0.42 9.70 -39.60 -0.38 -0.80 16 23 C -0.15 -1.02 10.03 -39.52 -0.40 -1.42 16 24 C 0.10 0.73 7.30 -39.42 -0.29 0.44 16 25 F -0.14 -1.23 17.27 2.25 0.04 -1.19 16 26 C -0.15 -1.01 10.03 -39.52 -0.40 -1.41 16 27 C -0.08 -0.50 9.70 -39.59 -0.38 -0.89 16 28 C -0.13 -1.06 7.63 -25.92 -0.20 -1.26 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 31 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 32 H 0.40 3.83 8.70 -40.82 -0.36 3.47 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.71 7.82 -51.93 -0.41 0.30 16 35 H 0.34 2.12 8.19 -39.29 -0.32 1.80 16 36 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 37 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -34.05 384.82 -10.69 -44.74 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.07 Total: 1.87 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -3.06 Total: -12.56 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: -0.25 Total: -39.64 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.05 -10.69 -44.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265466519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.314 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds