Wall clock time and date at job start Tue Mar 31 2020 20:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86801 * 119.99593 * 2 1 4 4 H 1.48495 * 109.47211 * 269.99876 * 3 2 1 5 5 H 1.48498 * 109.47240 * 30.00159 * 3 2 1 6 6 H 1.48500 * 109.46939 * 150.00013 * 3 2 1 7 7 C 1.38796 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99824 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00247 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00124 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47382 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99987 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00155 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99858 * 179.97438 * 13 11 10 15 15 H 1.09001 * 112.85141 * 336.19758 * 14 13 11 16 16 C 1.53784 * 113.61287 * 107.50217 * 14 13 11 17 17 C 1.53780 * 87.07945 * 89.11630 * 16 14 13 18 18 H 1.09003 * 113.69396 * 270.87427 * 17 16 14 19 19 N 1.46906 * 113.61363 * 139.98002 * 17 16 14 20 20 C 1.46902 * 110.99573 * 107.50333 * 19 17 16 21 21 C 1.50707 * 109.46656 * 179.97438 * 20 19 17 22 22 C 1.38239 * 119.97632 * 269.72223 * 21 20 19 23 23 C 1.38197 * 120.02311 * 179.76778 * 22 21 20 24 24 C 1.38458 * 119.97462 * 0.51271 * 23 22 21 25 25 F 1.35101 * 120.02660 * 179.76508 * 24 23 22 26 26 C 1.38455 * 119.94990 * 359.74442 * 24 23 22 27 27 C 1.38200 * 119.97313 * 359.97438 * 26 24 23 28 28 C 1.53778 * 87.08202 * 25.43327 * 17 16 14 29 29 H 0.96994 * 120.00348 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47297 * 59.99371 * 10 9 7 31 31 H 1.09004 * 109.47196 * 299.99747 * 10 9 7 32 32 H 0.96996 * 120.00098 * 0.02562 * 13 11 10 33 33 H 1.08995 * 113.61536 * 334.57018 * 16 14 13 34 34 H 1.09002 * 113.61652 * 203.66523 * 16 14 13 35 35 H 1.00896 * 111.00309 * 343.54745 * 19 17 16 36 36 H 1.08990 * 109.47358 * 299.99539 * 20 19 17 37 37 H 1.09004 * 109.47457 * 60.00221 * 20 19 17 38 38 H 1.07998 * 119.98684 * 0.02562 * 22 21 20 39 39 H 1.08003 * 120.01117 * 180.25861 * 23 22 21 40 40 H 1.08001 * 120.01728 * 179.97438 * 26 24 23 41 41 H 1.08002 * 119.98791 * 180.02562 * 27 26 24 42 42 H 1.09001 * 113.61879 * 89.11617 * 28 17 16 43 43 H 1.09007 * 113.61564 * 219.93644 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7913 -5.5024 -0.0010 13 7 2.8444 -6.3430 -0.0007 14 6 2.3307 -7.7150 -0.0008 15 1 1.3218 -7.7893 0.4051 16 6 2.5109 -8.4402 -1.3449 17 6 3.8838 -8.8976 -0.8244 18 1 4.6916 -8.2011 -1.0489 19 7 4.2134 -10.2856 -1.1749 20 6 5.2507 -10.3340 -2.2139 21 6 5.5623 -11.7706 -2.5461 22 6 6.5560 -12.4393 -1.8560 23 6 6.8392 -13.7581 -2.1565 24 6 6.1344 -14.4064 -3.1565 25 9 6.4137 -15.6942 -3.4544 26 6 5.1429 -13.7341 -3.8507 27 6 4.8575 -12.4170 -3.5444 28 6 3.3109 -8.7399 0.5940 29 1 -0.4850 0.8400 0.0004 30 1 3.1247 -3.7312 0.8905 31 1 3.1246 -3.7313 -0.8895 32 1 3.8011 -6.1834 -0.0004 33 1 2.5704 -7.7668 -2.1998 34 1 1.8071 -9.2584 -1.4974 35 1 3.3892 -10.7913 -1.4629 36 1 4.8935 -9.8232 -3.1080 37 1 6.1527 -9.8418 -1.8501 38 1 7.1085 -11.9321 -1.0788 39 1 7.6129 -14.2816 -1.6144 40 1 4.5928 -14.2386 -4.6312 41 1 4.0838 -11.8924 -4.0855 42 1 2.8257 -9.6399 0.9716 43 1 4.0166 -8.3096 1.3046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265466519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:41 Heat of formation + Delta-G solvation = -61.054551 kcal Electronic energy + Delta-G solvation = -24596.343073 eV Core-core repulsion = 20681.504241 eV Total energy + Delta-G solvation = -3914.838833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.89742 -41.25033 -40.17207 -39.32920 -35.89423 -34.58199 -33.96002 -32.06342 -31.43332 -30.31249 -27.67303 -26.60987 -26.30676 -24.09376 -23.93793 -22.35121 -22.04708 -20.44602 -19.82247 -18.63455 -17.98436 -17.40482 -17.10038 -16.97857 -16.87215 -16.63433 -16.49417 -16.27386 -15.85646 -15.75910 -15.05105 -14.91685 -14.64766 -14.51018 -14.42923 -14.21188 -13.89260 -13.64946 -13.35556 -13.23485 -13.16080 -12.97207 -12.88219 -12.80781 -12.58227 -12.27298 -11.91309 -11.72769 -11.66557 -11.28066 -11.13842 -10.95411 -10.26999 -10.06197 -10.03957 -9.61463 -9.24470 -8.66323 -8.34249 -6.12411 0.13762 0.30807 1.27440 1.43009 1.47719 1.57990 1.60325 2.25508 2.29626 2.57372 3.00057 3.30858 3.32173 3.33620 3.57809 3.69944 3.79078 3.86435 3.95328 4.00301 4.03914 4.10594 4.30330 4.31818 4.36215 4.51459 4.63846 4.67959 4.74652 4.82223 4.91335 4.97760 5.02529 5.07866 5.09458 5.17274 5.19089 5.29007 5.42345 5.58225 5.60419 5.93831 6.10835 6.20223 6.44687 6.53009 7.07175 7.26764 8.74957 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031800 B = 0.001486 C = 0.001462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.298136 B =18837.113507 C =19144.724552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.566 6.566 13 N -0.694 5.694 14 C 0.107 3.893 15 H 0.077 0.923 16 C -0.175 4.175 17 C 0.081 3.919 18 H 0.107 0.893 19 N -0.673 5.673 20 C 0.099 3.901 21 C -0.095 4.095 22 C -0.072 4.072 23 C -0.160 4.160 24 C 0.072 3.928 25 F -0.153 7.153 26 C -0.160 4.160 27 C -0.087 4.087 28 C -0.118 4.118 29 H 0.271 0.729 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.416 0.584 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.348 0.652 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.104 0.896 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.076 -27.527 -5.099 32.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.444 6.444 13 N -0.348 5.348 14 C 0.001 3.999 15 H 0.095 0.905 16 C -0.215 4.215 17 C -0.029 4.029 18 H 0.125 0.875 19 N -0.303 5.303 20 C -0.029 4.029 21 C -0.095 4.095 22 C -0.091 4.091 23 C -0.179 4.179 24 C 0.053 3.947 25 F -0.132 7.132 26 C -0.179 4.179 27 C -0.106 4.106 28 C -0.157 4.157 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.254 0.746 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.167 0.833 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.122 0.878 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.423 -27.914 -4.591 32.220 hybrid contribution 1.191 1.205 -0.911 1.924 sum 16.614 -26.709 -5.503 31.932 Atomic orbital electron populations 1.70183 1.07993 1.28604 1.48020 1.26122 0.95942 1.03309 0.93722 0.84953 0.78217 0.76030 0.78780 1.19325 1.20362 1.18152 1.23216 0.95384 0.92004 1.58868 0.89835 1.85596 1.10636 0.99278 1.97057 1.23374 1.03527 0.94297 1.06871 1.20082 0.86258 0.86688 0.74784 1.90693 1.17532 1.86052 1.50156 1.45417 1.09994 1.04304 1.75040 1.21817 0.99027 0.80575 0.98464 0.90502 1.24146 0.99511 1.00732 0.97130 1.23016 0.94933 0.89509 0.95454 0.87473 1.60489 1.14191 1.12758 1.42896 1.20932 0.96570 0.91553 0.93852 1.20009 0.96613 0.96669 0.96243 1.21133 0.96569 0.92924 0.98434 1.21378 1.01824 0.96373 0.98335 1.18067 0.98862 0.79064 0.98718 1.91471 1.93113 1.35888 1.92733 1.21327 0.98564 0.96122 1.01886 1.21166 0.99152 0.93413 0.96849 1.23369 0.97339 0.97831 0.97178 0.92009 0.87119 0.87130 0.74647 0.92152 0.88239 0.83263 0.93427 0.89140 0.83361 0.83660 0.83792 0.83600 0.87801 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.74 13.22 21.65 0.29 -55.45 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.55 -30.92 9.50 67.95 0.65 -30.27 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 10 C -0.13 -4.97 6.16 71.23 0.44 -4.53 16 11 C 0.54 19.12 7.85 87.66 0.69 19.81 16 12 O -0.57 -25.91 15.46 -3.06 -0.05 -25.96 16 13 N -0.69 -16.17 5.26 -440.03 -2.32 -18.49 16 14 C 0.11 2.19 4.32 45.52 0.20 2.39 16 15 H 0.08 2.03 7.47 -2.39 -0.02 2.02 16 16 C -0.17 -2.75 7.49 31.12 0.23 -2.52 16 17 C 0.08 0.91 4.06 45.44 0.18 1.09 16 18 H 0.11 1.05 7.87 -2.39 -0.02 1.03 16 19 N -0.67 -6.62 6.61 -492.83 -3.26 -9.88 16 20 C 0.10 0.85 5.66 85.56 0.48 1.33 16 21 C -0.09 -0.96 5.39 -19.86 -0.11 -1.06 16 22 C -0.07 -0.74 9.70 22.26 0.22 -0.53 16 23 C -0.16 -1.94 10.03 22.31 0.22 -1.71 16 24 C 0.07 1.06 7.30 22.37 0.16 1.22 16 25 F -0.15 -2.67 17.27 44.97 0.78 -1.89 16 26 C -0.16 -1.94 10.03 22.31 0.22 -1.72 16 27 C -0.09 -0.88 9.70 22.26 0.22 -0.66 16 28 C -0.12 -1.57 7.63 31.12 0.24 -1.33 16 29 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 32 H 0.42 6.71 8.70 -92.71 -0.81 5.90 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.39 7.82 -2.39 -0.02 1.37 16 35 H 0.35 3.29 8.19 -89.70 -0.73 2.55 16 36 H 0.05 0.39 8.08 -2.39 -0.02 0.37 16 37 H 0.09 0.68 8.07 -2.38 -0.02 0.66 16 38 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 39 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -76.47 384.82 0.32 -76.15 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -0.50 Total: 17.19 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 4.51 Total: -17.25 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -5.29 Total: -83.82 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -76.47 0.32 -76.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265466519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.093 kcal (2) G-P(sol) polarization free energy of solvation -76.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds