Wall clock time and date at job start Tue Mar 31 2020 20:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86796 * 120.00310 * 2 1 4 4 H 1.48496 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47074 * 300.00276 * 3 2 1 6 6 H 1.48495 * 109.47129 * 59.99897 * 3 2 1 7 7 C 1.38805 * 119.99444 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99515 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00514 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00082 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47067 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00095 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99943 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99800 * 179.97438 * 13 11 10 15 15 C 1.53513 * 114.16671 * 155.00117 * 14 13 11 16 16 N 1.47482 * 87.93391 * 87.62413 * 15 14 13 17 17 C 1.46895 * 111.00030 * 138.70112 * 16 15 14 18 18 C 1.50699 * 109.47108 * 170.00223 * 17 16 15 19 19 C 1.38237 * 120.00149 * 89.99560 * 18 17 16 20 20 C 1.38232 * 120.00007 * 180.02562 * 19 18 17 21 21 C 1.38237 * 120.00106 * 359.96073 * 20 19 18 22 22 C 1.50703 * 119.99984 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.47086 * 270.00325 * 22 21 20 24 24 C 1.38235 * 119.99857 * 0.27383 * 21 20 19 25 25 C 1.38230 * 120.00005 * 270.02165 * 18 17 16 26 26 C 1.47483 * 87.83286 * 27.00631 * 16 15 14 27 27 H 0.96995 * 119.99437 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47421 * 59.99554 * 10 9 7 29 29 H 1.08999 * 109.46986 * 299.99991 * 10 9 7 30 30 H 0.96999 * 120.00114 * 0.02562 * 13 11 10 31 31 H 1.08996 * 113.38123 * 21.92709 * 14 13 11 32 32 H 1.08999 * 113.48113 * 332.85976 * 15 14 13 33 33 H 1.09000 * 113.47513 * 202.38852 * 15 14 13 34 34 H 1.08994 * 109.47041 * 50.00281 * 17 16 15 35 35 H 1.09004 * 109.47042 * 290.00163 * 17 16 15 36 36 H 1.08000 * 119.99958 * 0.02562 * 19 18 17 37 37 H 1.08001 * 120.00086 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.47152 * 149.99993 * 22 21 20 39 39 H 1.09001 * 109.46980 * 30.00093 * 22 21 20 40 40 H 1.07998 * 119.99835 * 179.72747 * 24 21 20 41 41 H 1.08004 * 119.99854 * 0.02562 * 25 18 17 42 42 H 1.09000 * 113.47663 * 87.75874 * 26 16 15 43 43 H 1.09000 * 113.47534 * 218.22216 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8917 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 16 1.1292 -2.7281 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7910 -5.5024 -0.0011 13 7 2.8440 -6.3432 -0.0018 14 6 2.3301 -7.7152 -0.0019 15 6 3.2982 -8.7488 -0.5944 16 7 3.8888 -8.8873 0.7498 17 6 4.1760 -10.2950 1.0562 18 6 4.9951 -10.3774 2.3185 19 6 4.3660 -10.4791 3.5452 20 6 5.1173 -10.5541 4.7031 21 6 6.4978 -10.5283 4.6342 22 6 7.3169 -10.6107 5.8965 23 9 7.5505 -9.3210 6.3858 24 6 7.1267 -10.4217 3.4079 25 6 6.3754 -10.3507 2.2497 26 6 2.5837 -8.4814 1.3039 27 1 -0.4849 0.8400 0.0004 28 1 3.1244 -3.7315 0.8894 29 1 3.1243 -3.7315 -0.8905 30 1 3.8007 -6.1837 -0.0015 31 1 1.3091 -7.7947 -0.3750 32 1 3.9851 -8.3292 -1.3294 33 1 2.8042 -9.6542 -0.9470 34 1 4.7332 -10.7398 0.2318 35 1 3.2394 -10.8350 1.1949 36 1 3.2876 -10.4999 3.5990 37 1 4.6259 -10.6332 5.6615 38 1 8.2690 -11.0956 5.6809 39 1 6.7751 -11.1902 6.6440 40 1 8.2051 -10.3971 3.3544 41 1 6.8669 -10.2704 1.2913 42 1 1.8990 -9.3154 1.4580 43 1 2.6651 -7.8351 2.1779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267636640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:37 Heat of formation + Delta-G solvation = -50.049891 kcal Electronic energy + Delta-G solvation = -25094.400658 eV Core-core repulsion = 21180.039024 eV Total energy + Delta-G solvation = -3914.361635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.61408 -41.72938 -40.33187 -39.63550 -35.30979 -34.58456 -33.88066 -31.89474 -31.27529 -29.80578 -27.69556 -27.13518 -26.86720 -24.37186 -23.70680 -22.16127 -21.74099 -20.77665 -19.82949 -18.10489 -17.60343 -17.32142 -17.16235 -16.88969 -16.87292 -16.73814 -16.54830 -16.29886 -16.06618 -15.81130 -15.17800 -15.11314 -14.71148 -14.62591 -14.34191 -14.19932 -13.95610 -13.55584 -13.48886 -13.15999 -12.97943 -12.91646 -12.72487 -12.61940 -12.28376 -12.15341 -11.86175 -11.77142 -11.68605 -11.66352 -11.15799 -10.98115 -10.27985 -10.12257 -9.93521 -9.85106 -9.65144 -8.66409 -8.35043 -6.12663 0.24702 0.46598 1.26567 1.41335 1.46527 1.57518 1.58353 2.22282 2.27929 2.65313 2.99110 3.12998 3.31788 3.45562 3.57234 3.75438 3.83364 3.89165 3.95452 4.01301 4.02690 4.16190 4.25341 4.30101 4.40229 4.45345 4.51110 4.52496 4.60554 4.67446 4.71348 4.74287 4.81503 4.84437 5.02195 5.08882 5.21805 5.41736 5.42327 5.52528 5.54120 5.67067 5.96562 6.04971 6.20145 6.50989 7.06525 7.23524 8.74438 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.002029 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.633641 B =13796.680696 C =15322.237804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.130 4.130 11 C 0.539 3.461 12 O -0.563 6.563 13 N -0.689 5.689 14 C 0.106 3.894 15 C 0.007 3.993 16 N -0.474 5.474 17 C 0.056 3.944 18 C -0.071 4.071 19 C -0.125 4.125 20 C -0.110 4.110 21 C -0.152 4.152 22 C 0.101 3.899 23 F -0.233 7.233 24 C -0.108 4.108 25 C -0.113 4.113 26 C -0.011 4.011 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.417 0.583 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.098 0.902 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.454 -28.957 5.196 33.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.281 4.281 11 C 0.325 3.675 12 O -0.441 6.441 13 N -0.341 5.341 14 C -0.001 4.001 15 C -0.122 4.122 16 N -0.196 5.196 17 C -0.071 4.071 18 C -0.071 4.071 19 C -0.144 4.144 20 C -0.128 4.128 21 C -0.153 4.153 22 C 0.047 3.953 23 F -0.214 7.214 24 C -0.126 4.126 25 C -0.132 4.132 26 C -0.141 4.141 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.254 0.746 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.116 0.884 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.973 -28.858 5.383 32.954 hybrid contribution 1.115 0.996 0.033 1.495 sum 16.088 -27.862 5.417 32.626 Atomic orbital electron populations 1.70188 1.07920 1.28545 1.48071 1.26133 0.96001 1.03315 0.93771 0.84899 0.78563 0.76338 0.78113 1.18147 1.19812 1.19933 1.23235 0.95321 0.92053 1.58746 0.90037 1.85521 1.10397 0.99126 1.97034 1.23364 1.03603 0.94464 1.06682 1.20026 0.86203 0.86556 0.74731 1.90681 1.17248 1.85995 1.50208 1.45304 1.10128 1.04010 1.74708 1.22035 0.99195 0.81160 0.97728 1.24245 0.96198 0.98366 0.93411 1.68983 1.25746 1.19391 1.05474 1.21718 0.99592 0.90237 0.95576 1.19922 0.94254 0.98147 0.94812 1.21233 1.00401 1.00513 0.92227 1.21266 0.93398 0.98938 0.99203 1.20472 0.94811 1.04086 0.95929 1.21067 1.01417 0.79732 0.93126 1.92781 1.96135 1.43169 1.89360 1.21314 1.00884 0.98541 0.91843 1.21235 0.93403 0.99438 0.99077 1.24444 0.91419 0.99822 0.98403 0.91979 0.87608 0.87167 0.74631 0.88462 0.88165 0.87481 0.88284 0.91284 0.85357 0.84768 0.87719 0.88031 0.84307 0.84569 0.88449 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.28 13.22 21.65 0.29 -56.00 16 2 C 0.01 0.72 5.49 84.86 0.47 1.18 16 3 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.51 9.50 67.96 0.65 -30.87 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.28 20.57 -56.49 -1.16 -9.45 16 10 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 11 C 0.54 19.95 7.85 87.66 0.69 20.63 16 12 O -0.56 -25.83 15.46 -3.01 -0.05 -25.88 16 13 N -0.69 -17.78 5.39 -441.70 -2.38 -20.16 16 14 C 0.11 2.22 4.59 45.44 0.21 2.43 16 15 C 0.01 0.09 7.45 83.57 0.62 0.71 16 16 N -0.47 -7.32 6.32 -932.57 -5.89 -13.21 16 17 C 0.06 0.67 4.94 85.56 0.42 1.09 16 18 C -0.07 -1.07 5.46 -19.87 -0.11 -1.18 16 19 C -0.13 -1.96 9.70 22.27 0.22 -1.75 16 20 C -0.11 -1.70 9.70 22.27 0.22 -1.49 16 21 C -0.15 -2.29 5.60 -19.86 -0.11 -2.40 16 22 C 0.10 1.16 7.67 71.24 0.55 1.71 16 23 F -0.23 -4.54 17.34 44.97 0.78 -3.76 16 24 C -0.11 -1.56 9.70 22.27 0.22 -1.34 16 25 C -0.11 -1.66 9.70 22.27 0.22 -1.44 16 26 C -0.01 -0.20 7.52 83.57 0.63 0.43 16 27 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 28 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 29 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 30 H 0.42 8.81 8.76 -92.71 -0.81 7.99 16 31 H 0.10 2.38 7.45 -2.39 -0.02 2.37 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 0.93 7.91 -2.39 -0.02 0.91 16 34 H 0.10 0.89 8.02 -2.39 -0.02 0.87 16 35 H 0.07 0.67 7.25 -2.38 -0.02 0.65 16 36 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.10 0.70 8.09 -2.39 -0.02 0.68 16 39 H 0.10 0.73 8.09 -2.39 -0.02 0.71 16 40 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 42 H 0.10 1.38 7.42 -2.39 -0.02 1.37 16 43 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -78.85 384.11 -0.86 -79.71 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.21 Total: 19.68 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 5.31 Total: -17.07 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -7.98 Total: -89.37 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.78 Total: -3.76 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.45 kcal Total: -78.85 -0.86 -79.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267636640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.657 kcal (2) G-P(sol) polarization free energy of solvation -78.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds