Wall clock time and date at job start Tue Mar 31 2020 20:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47141 * 269.99831 * 3 2 1 5 5 H 1.48505 * 109.47177 * 29.99625 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99598 * 3 2 1 7 7 C 1.38799 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99356 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 H 1.09008 * 112.74739 * 285.33106 * 15 14 13 17 17 C 1.53520 * 113.47757 * 154.56250 * 15 14 13 18 18 C 1.53631 * 83.53276 * 219.22790 * 17 15 14 19 19 N 1.47474 * 87.95525 * 25.97402 * 18 17 15 20 20 C 1.46902 * 111.00191 * 221.34543 * 19 18 17 21 21 C 1.50697 * 109.47504 * 265.97084 * 20 19 18 22 22 C 1.38248 * 119.97678 * 269.73247 * 21 20 19 23 23 C 1.38197 * 120.02806 * 179.72689 * 22 21 20 24 24 C 1.38459 * 119.96823 * 0.56092 * 23 22 21 25 25 F 1.35102 * 120.02404 * 179.68626 * 24 23 22 26 26 C 1.38454 * 119.95311 * 359.70978 * 24 23 22 27 27 C 1.38197 * 119.97332 * 359.97438 * 26 24 23 28 28 H 0.97003 * 119.99714 * 0.02562 * 1 2 3 29 29 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 30 30 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 31 31 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 32 32 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 33 33 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 34 34 H 1.08994 * 114.16906 * 332.85471 * 17 15 14 35 35 H 1.09005 * 114.16890 * 105.56368 * 17 15 14 36 36 H 1.09006 * 113.42011 * 271.20676 * 18 17 15 37 37 H 1.08996 * 113.56806 * 140.76755 * 18 17 15 38 38 H 1.09001 * 109.47176 * 25.97543 * 20 19 18 39 39 H 1.09003 * 109.46860 * 145.97191 * 20 19 18 40 40 H 1.08007 * 119.98398 * 359.96750 * 22 21 20 41 41 H 1.07994 * 120.01722 * 180.29349 * 23 22 21 42 42 H 1.07997 * 120.01581 * 179.97438 * 26 24 23 43 43 H 1.08005 * 119.98808 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6528 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3440 -2.2963 0.0014 13 7 6.0456 -4.4947 -0.0021 14 6 7.4906 -4.7357 -0.0081 15 6 7.7563 -6.2425 -0.0120 16 1 7.5715 -6.7056 0.9574 17 6 9.1125 -6.6228 -0.6227 18 6 8.3181 -7.7927 -1.2232 19 7 7.1112 -6.9500 -1.1336 20 6 5.9569 -7.7311 -0.6693 21 6 5.1816 -8.2370 -1.8584 22 6 4.1548 -7.4774 -2.3875 23 6 3.4468 -7.9378 -3.4814 24 6 3.7585 -9.1657 -4.0402 25 9 3.0629 -9.6197 -5.1056 26 6 4.7833 -9.9282 -3.5059 27 6 5.4942 -9.4627 -2.4161 28 1 -0.4850 0.8401 -0.0004 29 1 3.6439 -3.4322 -0.8874 30 1 3.6433 -3.4309 0.8926 31 1 5.4290 -5.2435 -0.0014 32 1 7.9302 -4.2867 -0.8986 33 1 7.9370 -4.2908 0.8813 34 1 9.4852 -5.9116 -1.3597 35 1 9.8634 -6.9214 0.1089 36 1 8.2840 -8.6701 -0.5772 37 1 8.6043 -8.0339 -2.2469 38 1 6.3053 -8.5766 -0.0762 39 1 5.3129 -7.0991 -0.0578 40 1 3.9085 -6.5220 -1.9482 41 1 2.6479 -7.3421 -3.8976 42 1 5.0270 -10.8862 -3.9407 43 1 6.2934 -10.0575 -1.9989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276793247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:41 Heat of formation + Delta-G solvation = -20.512210 kcal Electronic energy + Delta-G solvation = -25927.838828 eV Core-core repulsion = 22014.758044 eV Total energy + Delta-G solvation = -3913.080785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.11708 -41.00032 -39.23293 -38.85781 -34.41667 -33.05860 -32.43285 -31.42955 -30.22876 -29.07724 -27.63931 -25.60188 -24.82556 -23.57854 -23.12916 -21.60544 -20.55061 -20.05115 -17.97089 -17.89466 -16.87287 -16.70429 -16.43599 -16.27834 -15.85110 -15.78605 -15.22487 -15.07073 -14.94860 -14.53890 -14.19852 -13.93593 -13.81701 -13.71748 -13.37036 -13.16446 -12.84114 -12.79006 -12.61684 -12.44884 -11.89359 -11.84192 -11.74397 -11.30566 -11.26293 -11.21042 -11.00173 -10.95827 -10.57797 -9.85173 -9.53858 -9.40029 -9.34315 -9.00545 -8.91252 -8.85478 -8.49074 -6.90841 -6.28413 -3.99948 0.81343 0.94915 2.76337 3.01049 3.13771 3.31149 3.34806 3.51241 3.58766 3.75045 3.98157 4.00301 4.28287 4.32020 4.34164 4.44357 4.60032 4.64161 4.72658 4.78237 4.81188 4.88950 4.96933 5.04356 5.10782 5.16753 5.26203 5.31964 5.39089 5.51051 5.59719 5.66580 5.69307 5.75732 5.81493 5.83724 5.85194 5.96525 6.00938 6.20692 6.55703 6.56405 6.62213 7.62715 7.94620 8.41865 8.52093 9.17927 10.80816 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010233 B = 0.002893 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.638400 B = 9674.819619 C =12067.290103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.731 5.731 14 C 0.140 3.860 15 C 0.013 3.987 16 H 0.086 0.914 17 C -0.134 4.134 18 C -0.002 4.002 19 N -0.456 5.456 20 C 0.056 3.944 21 C -0.084 4.084 22 C -0.068 4.068 23 C -0.150 4.150 24 C 0.096 3.904 25 F -0.141 7.141 26 C -0.156 4.156 27 C -0.084 4.084 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.394 0.606 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.133 0.867 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.890 -23.598 -2.219 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.385 5.385 14 C 0.016 3.984 15 C -0.097 4.097 16 H 0.103 0.897 17 C -0.173 4.173 18 C -0.131 4.131 19 N -0.179 5.179 20 C -0.072 4.072 21 C -0.084 4.084 22 C -0.087 4.087 23 C -0.168 4.168 24 C 0.077 3.923 25 F -0.120 7.120 26 C -0.175 4.175 27 C -0.102 4.102 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.229 0.771 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.151 0.849 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 16.702 -21.584 -2.827 27.437 hybrid contribution -1.211 -1.360 0.415 1.868 sum 15.491 -22.944 -2.412 27.789 Atomic orbital electron populations 1.69940 1.05920 1.27755 1.48115 1.24709 0.94442 0.98958 0.93178 0.86739 0.81902 0.83284 0.79956 1.19196 1.19970 1.15900 1.22319 0.88321 0.97511 1.58744 0.89423 1.84794 1.09191 1.00037 1.97408 1.23276 0.94167 1.04420 1.05618 1.20256 0.90530 0.82323 0.75323 1.90699 1.58761 1.42174 1.47850 1.45875 1.07405 1.07792 1.77471 1.21241 0.81841 0.92763 1.02570 1.23741 0.95315 0.95695 0.94953 0.89661 1.23190 0.95239 0.98327 1.00496 1.23863 0.91226 0.95611 1.02408 1.69040 1.01356 1.16875 1.30619 1.21700 0.94030 0.97485 0.93998 1.19642 0.96499 0.94476 0.97833 1.20962 0.93912 0.99276 0.94542 1.21236 1.02297 0.95345 0.97968 1.17760 0.93490 0.94382 0.86672 1.91504 1.77850 1.89003 1.53649 1.21075 0.96833 1.00992 0.98570 1.20815 0.98742 0.95537 0.95136 0.91951 0.88621 0.88643 0.77110 0.90875 0.91193 0.88271 0.90113 0.91169 0.89414 0.92233 0.89908 0.84763 0.84405 0.84920 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.83 27.74 -169.99 -4.72 17.11 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 8 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 11 C 0.53 9.36 7.85 -10.98 -0.09 9.27 16 12 O -0.52 -11.21 15.86 5.55 0.09 -11.12 16 13 N -0.73 -9.18 5.47 -60.30 -0.33 -9.51 16 14 C 0.14 1.49 5.80 -4.04 -0.02 1.47 16 15 C 0.01 0.09 3.22 -71.43 -0.23 -0.14 16 16 H 0.09 0.51 7.91 -51.92 -0.41 0.10 16 17 C -0.13 -0.76 8.01 -26.13 -0.21 -0.97 16 18 C 0.00 -0.01 7.71 -7.49 -0.06 -0.07 16 19 N -0.46 -3.48 5.91 -237.75 -1.41 -4.89 16 20 C 0.06 0.38 4.72 -4.98 -0.02 0.36 16 21 C -0.08 -0.69 5.47 -104.62 -0.57 -1.26 16 22 C -0.07 -0.65 9.70 -39.59 -0.38 -1.03 16 23 C -0.15 -1.50 10.03 -39.52 -0.40 -1.90 16 24 C 0.10 0.98 7.30 -39.42 -0.29 0.69 16 25 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 26 C -0.16 -1.30 10.03 -39.52 -0.40 -1.70 16 27 C -0.08 -0.62 9.70 -39.60 -0.38 -1.01 16 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 30 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.39 4.04 6.25 -40.82 -0.26 3.79 16 32 H 0.07 0.88 7.90 -51.93 -0.41 0.47 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.63 7.95 -51.93 -0.41 0.22 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.30 7.42 -51.93 -0.39 -0.09 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.32 7.24 -51.93 -0.38 -0.06 16 39 H 0.08 0.56 6.19 -51.93 -0.32 0.23 16 40 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -34.55 377.08 -10.43 -44.98 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.95 Total: 1.09 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.61 Total: -10.43 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -0.96 Total: -40.21 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.55 -10.43 -44.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276793247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.467 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds