Wall clock time and date at job start Tue Mar 31 2020 20:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99946 * 2 1 4 4 H 1.48502 * 109.46948 * 270.00332 * 3 2 1 5 5 H 1.48504 * 109.47038 * 29.99988 * 3 2 1 6 6 H 1.48494 * 109.47024 * 150.00111 * 3 2 1 7 7 C 1.37873 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00088 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46918 * 180.02562 * 9 7 2 11 11 C 1.48229 * 110.99702 * 169.99970 * 10 9 7 12 12 C 1.52550 * 85.73028 * 223.31368 * 11 10 9 13 13 C 1.48230 * 111.00277 * 70.34091 * 10 9 7 14 14 C 1.53865 * 115.93509 * 140.83514 * 12 11 10 15 15 C 1.55151 * 101.41317 * 163.64597 * 14 12 11 16 16 N 1.47538 * 105.09689 * 324.29068 * 15 14 12 17 17 C 1.34778 * 125.66106 * 203.99194 * 16 15 14 18 18 O 1.21287 * 120.00135 * 180.02562 * 17 16 15 19 19 C 1.50698 * 119.99958 * 0.02562 * 17 16 15 20 20 N 1.46502 * 109.47217 * 180.02562 * 19 17 16 21 21 C 1.35045 * 126.03909 * 124.71262 * 20 19 17 22 22 C 1.35371 * 107.73132 * 179.84058 * 21 20 19 23 23 Cl 1.73600 * 126.04860 * 180.16414 * 22 21 20 24 24 C 1.39927 * 107.90471 * 0.42454 * 22 21 20 25 25 N 1.30856 * 108.21757 * 359.74083 * 24 22 21 26 26 C 1.47615 * 108.54455 * 23.94918 * 16 15 14 27 27 H 0.96998 * 120.00278 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47293 * 60.00049 * 9 7 2 29 29 H 1.08997 * 109.46787 * 299.99796 * 9 7 2 30 30 H 1.08994 * 113.83362 * 109.11449 * 11 10 9 31 31 H 1.08997 * 113.94286 * 337.52697 * 11 10 9 32 32 H 1.09001 * 113.82880 * 22.47812 * 13 10 9 33 33 H 1.09000 * 113.83049 * 250.88293 * 13 10 9 34 34 H 1.08998 * 111.03279 * 45.60974 * 14 12 11 35 35 H 1.09004 * 111.03378 * 281.67703 * 14 12 11 36 36 H 1.09002 * 110.33608 * 83.22593 * 15 14 12 37 37 H 1.08996 * 110.33280 * 205.35880 * 15 14 12 38 38 H 1.08996 * 109.47171 * 300.00208 * 19 17 16 39 39 H 1.08991 * 109.47075 * 60.00476 * 19 17 16 40 40 H 1.08009 * 126.13469 * 359.97438 * 21 20 19 41 41 H 1.08007 * 125.89467 * 179.75686 * 24 22 21 42 42 H 1.08997 * 109.96185 * 238.59153 * 26 16 15 43 43 H 1.09002 * 110.00910 * 117.33532 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2057 -3.6157 -0.0015 11 6 1.5148 -4.9051 0.2377 12 6 2.6732 -5.2206 1.1789 13 6 2.9037 -3.7175 1.3022 14 6 2.3025 -5.9528 2.4804 15 6 3.6882 -6.4733 2.9452 16 7 4.4044 -6.8211 1.7031 17 6 5.4175 -7.7042 1.6011 18 8 5.9347 -7.9121 0.5240 19 6 5.9076 -8.4333 2.8256 20 7 7.0063 -9.3283 2.4539 21 6 8.2412 -9.3397 3.0004 22 6 8.9551 -10.3118 2.3855 23 17 10.6034 -10.7383 2.7244 24 6 8.1312 -10.9080 1.4244 25 7 6.9633 -10.3192 1.4647 26 6 3.8244 -6.0406 0.5925 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5564 -0.8919 29 1 0.6241 -2.5575 0.8880 30 1 1.4716 -5.5509 -0.6392 31 1 0.5532 -4.8051 0.7410 32 1 2.3634 -3.2553 2.1284 33 1 3.9540 -3.4283 1.2632 34 1 1.6199 -6.7794 2.2835 35 1 1.8787 -5.2630 3.2104 36 1 4.2242 -5.6931 3.4857 37 1 3.5699 -7.3558 3.5739 38 1 6.2609 -7.7110 3.5614 39 1 5.0916 -9.0167 3.2519 40 1 8.5951 -8.6912 3.7883 41 1 8.4108 -11.7152 0.7635 42 1 3.4478 -6.7132 -0.1781 43 1 4.5780 -5.3758 0.1704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277933998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:38 Heat of formation + Delta-G solvation = 90.350347 kcal Electronic energy + Delta-G solvation = -26181.866943 eV Core-core repulsion = 22291.469775 eV Total energy + Delta-G solvation = -3890.397168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67359 -40.71423 -39.12546 -36.72670 -36.37261 -33.73138 -33.00111 -31.27903 -30.40393 -29.47870 -28.28845 -26.59933 -25.78012 -24.32610 -23.14281 -21.82674 -21.56192 -20.60278 -19.63359 -18.60425 -17.82510 -17.22860 -16.67017 -16.31838 -15.89144 -15.19171 -15.07197 -14.89261 -14.65188 -14.49663 -14.31010 -14.06146 -13.63707 -13.41482 -13.31334 -12.89162 -12.66536 -12.62283 -12.19067 -12.03827 -11.87732 -11.83083 -11.69762 -11.41162 -10.99277 -10.88465 -10.79879 -10.58633 -10.42769 -10.32945 -10.17971 -9.76866 -9.60416 -9.22419 -8.83224 -8.76621 -8.53914 -7.81064 -6.10587 -4.12588 1.31233 1.56146 2.29695 2.31095 2.39076 2.71925 3.27213 3.33471 3.36623 3.93463 4.14767 4.27665 4.30842 4.37575 4.47961 4.55542 4.58991 4.62948 4.86703 5.01706 5.09472 5.16637 5.24977 5.25741 5.32013 5.69866 5.71262 5.79197 5.89789 5.92735 6.01298 6.01946 6.06931 6.20954 6.30364 6.36364 6.48214 6.63234 7.13826 7.20642 7.24852 7.58135 7.82636 7.86922 8.05470 8.36073 8.94938 9.52323 11.00493 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.022502 B = 0.001930 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.048348 B =14503.632512 C =15145.837870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.161 3.839 10 N -0.477 5.477 11 C 0.016 3.984 12 C -0.106 4.106 13 C 0.038 3.962 14 C -0.122 4.122 15 C 0.096 3.904 16 N -0.617 5.617 17 C 0.513 3.487 18 O -0.510 6.510 19 C 0.122 3.878 20 N -0.355 5.355 21 C 0.073 3.927 22 C -0.185 4.185 23 Cl -0.044 7.044 24 C 0.059 3.941 25 N -0.250 5.250 26 C 0.144 3.856 27 H 0.262 0.738 28 H 0.032 0.968 29 H -0.002 1.002 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.184 0.816 41 H 0.192 0.808 42 H 0.073 0.927 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.316 -20.827 12.334 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.035 3.965 10 N -0.200 5.200 11 C -0.114 4.114 12 C -0.107 4.107 13 C -0.091 4.091 14 C -0.160 4.160 15 C -0.027 4.027 16 N -0.353 5.353 17 C 0.298 3.702 18 O -0.384 6.384 19 C -0.003 4.003 20 N -0.137 5.137 21 C -0.074 4.074 22 C -0.223 4.223 23 Cl -0.016 7.016 24 C -0.129 4.129 25 N -0.070 5.070 26 C 0.022 3.978 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.016 0.984 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.201 0.799 41 H 0.208 0.792 42 H 0.091 0.909 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.714 -20.638 10.694 26.029 hybrid contribution 0.700 1.069 1.135 1.709 sum 12.414 -19.569 11.829 26.019 Atomic orbital electron populations 1.69951 1.06057 1.26868 1.50786 1.24992 0.94881 0.99389 0.95278 0.86495 0.79667 0.83002 0.78240 1.20551 1.21264 1.19876 1.21083 0.93411 0.89972 1.50451 0.92046 1.20201 0.90995 0.88780 0.96538 1.68644 1.21116 1.01882 1.28368 1.23674 0.95002 0.95169 0.97522 1.22533 0.96426 0.96230 0.95552 1.23536 1.00927 0.90638 0.94015 1.22684 0.95426 1.00523 0.97403 1.22485 0.93422 1.00160 0.86648 1.48691 1.34021 1.41459 1.11088 1.19985 0.79952 0.79761 0.90460 1.90823 1.56001 1.63186 1.28431 1.21542 0.89671 0.92607 0.96494 1.47854 1.09490 1.27756 1.28592 1.22214 0.85277 0.99689 1.00207 1.20737 0.89633 1.05466 1.06483 1.98328 1.15722 1.92752 1.94837 1.23945 0.90191 1.00375 0.98349 1.77665 1.21191 1.01619 1.06490 1.21550 0.94734 0.93220 0.88272 0.92859 0.94981 0.98376 0.90240 0.91369 0.91031 0.90486 0.90271 0.89296 0.90655 0.90767 0.85420 0.86404 0.79889 0.79164 0.90908 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -14.06 8.83 -34.44 -0.30 -14.37 16 8 H 0.06 1.69 7.80 -52.49 -0.41 1.28 16 9 C 0.16 4.04 4.58 -4.97 -0.02 4.02 16 10 N -0.48 -9.76 6.25 -247.04 -1.54 -11.31 16 11 C 0.02 0.25 7.32 -3.32 -0.02 0.23 16 12 C -0.11 -1.42 0.97 -154.66 -0.15 -1.57 16 13 C 0.04 0.64 6.71 -3.31 -0.02 0.62 16 14 C -0.12 -1.16 6.45 -25.14 -0.16 -1.32 16 15 C 0.10 0.73 6.70 -2.34 -0.02 0.71 16 16 N -0.62 -6.79 3.35 -170.60 -0.57 -7.36 16 17 C 0.51 6.15 7.88 -10.99 -0.09 6.06 16 18 O -0.51 -8.68 16.04 5.55 0.09 -8.59 16 19 C 0.12 0.91 6.00 -5.19 -0.03 0.88 16 20 N -0.35 -3.58 3.40 -62.51 -0.21 -3.79 16 21 C 0.07 0.61 11.43 -17.16 -0.20 0.41 16 22 C -0.18 -1.73 6.65 -39.97 -0.27 -2.00 16 23 Cl -0.04 -0.37 29.30 -51.86 -1.52 -1.89 16 24 C 0.06 0.61 12.02 -17.34 -0.21 0.40 16 25 N -0.25 -3.15 11.64 30.64 0.36 -2.79 16 26 C 0.14 1.95 6.39 -3.42 -0.02 1.92 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.00 -0.04 7.71 -51.93 -0.40 -0.44 16 30 H 0.08 1.21 8.02 -51.93 -0.42 0.79 16 31 H 0.07 1.08 7.80 -51.93 -0.41 0.68 16 32 H 0.07 1.25 7.67 -51.93 -0.40 0.86 16 33 H 0.08 1.32 8.02 -51.93 -0.42 0.90 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.80 7.97 -51.93 -0.41 0.39 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.35 7.48 -51.93 -0.39 -0.04 16 38 H 0.13 0.47 8.07 -51.93 -0.42 0.05 16 39 H 0.12 0.62 7.85 -51.93 -0.41 0.21 16 40 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 41 H 0.19 1.44 8.06 -52.48 -0.42 1.02 16 42 H 0.07 1.04 8.00 -51.93 -0.42 0.63 16 43 H 0.08 1.22 7.87 -51.93 -0.41 0.82 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -35.14 374.64 -9.80 -44.93 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.15 Total: -3.26 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.61 Total: -2.51 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -1.24 Total: -50.65 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.14 -9.80 -44.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277933998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.283 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds