Wall clock time and date at job start Tue Mar 31 2020 20:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99946 * 2 1 4 4 H 1.48502 * 109.46948 * 270.00332 * 3 2 1 5 5 H 1.48504 * 109.47038 * 29.99988 * 3 2 1 6 6 H 1.48494 * 109.47024 * 150.00111 * 3 2 1 7 7 C 1.37873 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00106 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00088 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46918 * 180.02562 * 9 7 2 11 11 C 1.48229 * 110.99702 * 169.99970 * 10 9 7 12 12 C 1.52550 * 85.73028 * 223.31368 * 11 10 9 13 13 C 1.48230 * 111.00277 * 70.34091 * 10 9 7 14 14 C 1.53865 * 115.93509 * 140.83514 * 12 11 10 15 15 C 1.55151 * 101.41317 * 163.64597 * 14 12 11 16 16 N 1.47538 * 105.09689 * 324.29068 * 15 14 12 17 17 C 1.34778 * 125.66106 * 203.99194 * 16 15 14 18 18 O 1.21287 * 120.00135 * 180.02562 * 17 16 15 19 19 C 1.50698 * 119.99958 * 0.02562 * 17 16 15 20 20 N 1.46502 * 109.47217 * 180.02562 * 19 17 16 21 21 C 1.35045 * 126.03909 * 124.71262 * 20 19 17 22 22 C 1.35371 * 107.73132 * 179.84058 * 21 20 19 23 23 Cl 1.73600 * 126.04860 * 180.16414 * 22 21 20 24 24 C 1.39927 * 107.90471 * 0.42454 * 22 21 20 25 25 N 1.30856 * 108.21757 * 359.74083 * 24 22 21 26 26 C 1.47615 * 108.54455 * 23.94918 * 16 15 14 27 27 H 0.96998 * 120.00278 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47293 * 60.00049 * 9 7 2 29 29 H 1.08997 * 109.46787 * 299.99796 * 9 7 2 30 30 H 1.08994 * 113.83362 * 109.11449 * 11 10 9 31 31 H 1.08997 * 113.94286 * 337.52697 * 11 10 9 32 32 H 1.09001 * 113.82880 * 22.47812 * 13 10 9 33 33 H 1.09000 * 113.83049 * 250.88293 * 13 10 9 34 34 H 1.08998 * 111.03279 * 45.60974 * 14 12 11 35 35 H 1.09004 * 111.03378 * 281.67703 * 14 12 11 36 36 H 1.09002 * 110.33608 * 83.22593 * 15 14 12 37 37 H 1.08996 * 110.33280 * 205.35880 * 15 14 12 38 38 H 1.08996 * 109.47171 * 300.00208 * 19 17 16 39 39 H 1.08991 * 109.47075 * 60.00476 * 19 17 16 40 40 H 1.08009 * 126.13469 * 359.97438 * 21 20 19 41 41 H 1.08007 * 125.89467 * 179.75686 * 24 22 21 42 42 H 1.08997 * 109.96185 * 238.59153 * 26 16 15 43 43 H 1.09002 * 110.00910 * 117.33532 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2057 -3.6157 -0.0015 11 6 1.5148 -4.9051 0.2377 12 6 2.6732 -5.2206 1.1789 13 6 2.9037 -3.7175 1.3022 14 6 2.3025 -5.9528 2.4804 15 6 3.6882 -6.4733 2.9452 16 7 4.4044 -6.8211 1.7031 17 6 5.4175 -7.7042 1.6011 18 8 5.9347 -7.9121 0.5240 19 6 5.9076 -8.4333 2.8256 20 7 7.0063 -9.3283 2.4539 21 6 8.2412 -9.3397 3.0004 22 6 8.9551 -10.3118 2.3855 23 17 10.6034 -10.7383 2.7244 24 6 8.1312 -10.9080 1.4244 25 7 6.9633 -10.3192 1.4647 26 6 3.8244 -6.0406 0.5925 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5564 -0.8919 29 1 0.6241 -2.5575 0.8880 30 1 1.4716 -5.5509 -0.6392 31 1 0.5532 -4.8051 0.7410 32 1 2.3634 -3.2553 2.1284 33 1 3.9540 -3.4283 1.2632 34 1 1.6199 -6.7794 2.2835 35 1 1.8787 -5.2630 3.2104 36 1 4.2242 -5.6931 3.4857 37 1 3.5699 -7.3558 3.5739 38 1 6.2609 -7.7110 3.5614 39 1 5.0916 -9.0167 3.2519 40 1 8.5951 -8.6912 3.7883 41 1 8.4108 -11.7152 0.7635 42 1 3.4478 -6.7132 -0.1781 43 1 4.5780 -5.3758 0.1704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277933998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:38 Heat of formation + Delta-G solvation = 64.456867 kcal Electronic energy + Delta-G solvation = -26182.989769 eV Core-core repulsion = 22291.469775 eV Total energy + Delta-G solvation = -3891.519994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.36810 -41.82939 -40.21178 -37.52320 -37.32941 -35.05008 -34.39660 -32.51869 -31.08427 -30.59997 -29.42160 -27.85036 -27.17596 -25.75458 -24.30443 -22.55912 -22.22916 -22.15599 -20.44143 -19.73623 -18.62664 -18.47649 -18.09760 -17.32139 -16.78068 -16.73279 -16.28697 -15.94544 -15.73637 -15.53147 -15.28188 -15.07761 -14.72449 -14.43937 -14.22019 -14.05359 -13.83845 -13.77960 -13.41681 -13.23002 -13.00840 -12.87882 -12.66584 -12.60479 -12.48974 -12.35302 -12.27297 -11.94788 -11.49242 -11.39180 -11.34444 -11.25656 -11.08787 -10.66059 -10.49971 -9.74955 -9.45638 -9.42813 -8.24885 -6.35088 0.66043 0.96508 1.38293 1.40077 1.46696 1.50674 1.61342 1.71919 1.93590 2.37257 3.07792 3.11197 3.25490 3.33254 3.59557 3.67389 3.77390 3.84938 4.04554 4.08428 4.10287 4.35850 4.48446 4.51882 4.57274 4.61894 4.65461 4.67720 4.74894 4.82569 4.86957 4.93139 5.02173 5.08210 5.13855 5.23141 5.27639 5.34021 5.53362 5.77677 5.79512 6.13809 6.41593 6.44414 6.51904 6.80310 7.01206 7.34945 8.86402 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.022502 B = 0.001930 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.048348 B =14503.632512 C =15145.837870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.967 3.033 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.178 3.822 10 N -0.505 5.505 11 C 0.014 3.986 12 C -0.083 4.083 13 C 0.039 3.961 14 C -0.117 4.117 15 C 0.096 3.904 16 N -0.613 5.613 17 C 0.507 3.493 18 O -0.572 6.572 19 C 0.124 3.876 20 N -0.362 5.362 21 C 0.084 3.916 22 C -0.203 4.203 23 Cl -0.040 7.040 24 C 0.051 3.949 25 N -0.300 5.300 26 C 0.147 3.853 27 H 0.265 0.735 28 H -0.003 1.003 29 H -0.018 1.018 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.176 0.824 39 H 0.149 0.851 40 H 0.223 0.777 41 H 0.204 0.796 42 H 0.060 0.940 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.390 -21.254 15.412 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.074 0.926 9 C 0.051 3.949 10 N -0.228 5.228 11 C -0.115 4.115 12 C -0.084 4.084 13 C -0.090 4.090 14 C -0.155 4.155 15 C -0.025 4.025 16 N -0.348 5.348 17 C 0.295 3.705 18 O -0.451 6.451 19 C 0.001 3.999 20 N -0.144 5.144 21 C -0.063 4.063 22 C -0.241 4.241 23 Cl -0.012 7.012 24 C -0.136 4.136 25 N -0.120 5.120 26 C 0.024 3.976 27 H 0.074 0.926 28 H 0.015 0.985 29 H -0.001 1.001 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.193 0.807 39 H 0.166 0.834 40 H 0.240 0.760 41 H 0.220 0.780 42 H 0.078 0.922 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.777 -21.079 13.810 28.254 hybrid contribution 0.362 1.181 0.132 1.242 sum 13.140 -19.898 13.942 27.622 Atomic orbital electron populations 1.70066 1.07584 1.27952 1.51474 1.25885 0.95769 1.03113 0.94695 0.85419 0.78643 0.78441 0.78336 1.20280 1.20377 1.18852 1.21386 0.93338 0.91379 1.50490 0.92552 1.19837 0.91030 0.90131 0.93950 1.68547 1.21043 1.02083 1.31099 1.23737 0.96101 0.92899 0.98751 1.22161 0.94834 0.94251 0.97136 1.23507 0.99954 0.93501 0.92029 1.22725 0.97222 1.00621 0.94916 1.22779 0.91569 1.02724 0.85453 1.48740 1.33958 1.40661 1.11428 1.20880 0.79147 0.79188 0.91237 1.90801 1.57998 1.65121 1.31155 1.21903 0.90328 0.93133 0.94558 1.48086 1.10611 1.27519 1.28200 1.22850 0.84287 0.99128 1.00022 1.20905 0.90056 1.06273 1.06898 1.98325 1.15273 1.92812 1.94782 1.24277 0.90106 1.00555 0.98661 1.77590 1.22532 1.03399 1.08521 1.21261 0.94090 0.92890 0.89313 0.92596 0.98517 1.00060 0.89799 0.90988 0.91398 0.90985 0.88886 0.88195 0.88915 0.86230 0.80709 0.83390 0.76039 0.77982 0.92152 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.21 13.29 21.45 0.28 -54.92 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.53 -29.79 8.83 25.60 0.23 -29.56 16 8 H 0.06 3.16 7.80 -2.91 -0.02 3.14 16 9 C 0.18 9.30 4.58 85.56 0.39 9.69 16 10 N -0.51 -21.34 6.25 -935.51 -5.85 -27.19 16 11 C 0.01 0.46 7.32 85.90 0.63 1.09 16 12 C -0.08 -2.13 0.97 -52.12 -0.05 -2.18 16 13 C 0.04 1.33 6.71 85.90 0.58 1.90 16 14 C -0.12 -1.83 6.45 31.62 0.20 -1.62 16 15 C 0.10 1.01 6.70 86.92 0.58 1.60 16 16 N -0.61 -12.06 3.35 -812.03 -2.72 -14.78 16 17 C 0.51 11.17 7.88 87.66 0.69 11.86 16 18 O -0.57 -19.60 16.04 -3.05 -0.05 -19.65 16 19 C 0.12 1.35 6.00 85.63 0.51 1.86 16 20 N -0.36 -6.41 3.40 -351.68 -1.20 -7.61 16 21 C 0.08 1.16 11.43 83.54 0.95 2.11 16 22 C -0.20 -3.50 6.65 22.02 0.15 -3.35 16 23 Cl -0.04 -0.61 29.30 -2.72 -0.08 -0.69 16 24 C 0.05 1.04 12.02 85.25 1.02 2.07 16 25 N -0.30 -7.38 11.64 -56.97 -0.66 -8.04 16 26 C 0.15 3.96 6.39 86.17 0.55 4.51 16 27 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 29 H -0.02 -1.00 7.71 -2.39 -0.02 -1.01 16 30 H 0.08 2.61 8.02 -2.39 -0.02 2.59 16 31 H 0.07 2.29 7.80 -2.39 -0.02 2.27 16 32 H 0.07 2.37 7.67 -2.39 -0.02 2.35 16 33 H 0.07 2.49 8.02 -2.39 -0.02 2.47 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 1.43 7.97 -2.38 -0.02 1.41 16 36 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.12 0.31 7.48 -2.39 -0.02 0.29 16 38 H 0.18 0.21 8.07 -2.39 -0.02 0.19 16 39 H 0.15 0.75 7.85 -2.39 -0.02 0.74 16 40 H 0.22 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.06 1.77 8.00 -2.39 -0.02 1.75 16 43 H 0.05 1.65 7.87 -2.39 -0.02 1.63 16 Total: -1.00 -82.22 374.64 -0.33 -82.55 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: 1.02 Total: 3.71 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 6.90 Total: 0.67 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -10.14 Total: -112.54 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.05 Total: -19.65 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -82.22 -0.33 -82.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277933998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.004 kcal (2) G-P(sol) polarization free energy of solvation -82.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds