Wall clock time and date at job start Tue Mar 31 2020 20:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48498 * 109.46722 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47349 * 300.00141 * 3 2 1 6 6 H 1.48499 * 109.46875 * 60.00478 * 3 2 1 7 7 C 1.37878 * 119.99530 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99509 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00511 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47198 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.47667 * 110.99749 * 266.28361 * 11 10 9 13 13 C 1.52554 * 87.65048 * 222.04277 * 12 11 10 14 14 C 1.52528 * 121.71143 * 149.57682 * 13 12 11 15 15 C 1.53682 * 82.99329 * 102.33904 * 14 13 12 16 16 N 1.46005 * 121.84700 * 260.94364 * 13 12 11 17 17 C 1.34780 * 136.23002 * 78.79080 * 16 13 12 18 18 O 1.21279 * 119.99675 * 0.02562 * 17 16 13 19 19 C 1.50694 * 120.00398 * 180.02562 * 17 16 13 20 20 N 1.46495 * 109.47365 * 179.97438 * 19 17 16 21 21 C 1.35046 * 126.03537 * 124.99942 * 20 19 17 22 22 C 1.35381 * 107.73052 * 179.97438 * 21 20 19 23 23 Cl 1.73594 * 126.04533 * 179.97438 * 22 21 20 24 24 C 1.39932 * 107.90388 * 0.02562 * 22 21 20 25 25 N 1.30856 * 108.21247 * 359.75195 * 24 22 21 26 26 C 1.47665 * 111.00115 * 170.00321 * 11 10 9 27 27 H 0.97001 * 119.99851 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46594 * 60.00822 * 9 7 2 29 29 H 1.08996 * 109.47202 * 300.00680 * 9 7 2 30 30 H 1.08993 * 109.47007 * 60.00472 * 10 9 7 31 31 H 1.08996 * 109.47340 * 300.00278 * 10 9 7 32 32 H 1.08998 * 113.52323 * 336.73464 * 12 11 10 33 33 H 1.09004 * 113.52460 * 107.34954 * 12 11 10 34 34 H 1.08997 * 114.28674 * 215.86845 * 14 13 12 35 35 H 1.08992 * 114.29428 * 348.80300 * 14 13 12 36 36 H 1.09010 * 113.41742 * 270.28416 * 15 14 13 37 37 H 1.09002 * 113.46525 * 140.01072 * 15 14 13 38 38 H 1.09001 * 109.47481 * 300.00164 * 19 17 16 39 39 H 1.08999 * 109.46896 * 60.00086 * 19 17 16 40 40 H 1.08004 * 126.13817 * 359.97438 * 21 20 19 41 41 H 1.07997 * 125.89165 * 180.02562 * 24 22 21 42 42 H 1.09003 * 113.51873 * 252.65186 * 26 11 10 43 43 H 1.09003 * 113.52053 * 23.18904 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 1.3230 -5.4377 1.3743 13 6 1.6621 -6.8276 0.8449 14 6 2.3441 -7.8745 1.7197 15 6 0.9227 -8.4518 1.8101 16 7 0.6249 -7.8031 0.5219 17 6 -0.2266 -8.0159 -0.5010 18 8 -0.2234 -7.2704 -1.4576 19 6 -1.1826 -9.1799 -0.4560 20 7 -1.9944 -9.1925 -1.6754 21 6 -2.1231 -10.2273 -2.5335 22 6 -2.9572 -9.8382 -3.5264 23 17 -3.4500 -10.8026 -4.8831 24 6 -3.3509 -8.5209 -3.2661 25 7 -2.7783 -8.1350 -2.1545 26 6 2.4218 -6.0714 -0.2405 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8717 -3.6044 0.8894 31 1 2.8719 -3.6044 -0.8904 32 1 2.0558 -5.0513 2.0827 33 1 0.2982 -5.3474 1.7346 34 1 3.0530 -8.5096 1.1887 35 1 2.7317 -7.4877 2.6621 36 1 0.3438 -8.0498 2.6417 37 1 0.8927 -9.5405 1.7641 38 1 -0.6192 -10.1103 -0.3847 39 1 -1.8337 -9.0819 0.4126 40 1 -1.6462 -11.1922 -2.4439 41 1 -4.0162 -7.9269 -3.8750 42 1 2.3169 -6.5116 -1.2321 43 1 3.4590 -5.8600 0.0199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277941542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:28 Heat of formation + Delta-G solvation = 130.847943 kcal Electronic energy + Delta-G solvation = -26447.992669 eV Core-core repulsion = 22559.351608 eV Total energy + Delta-G solvation = -3888.641061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63865 -41.27954 -38.60742 -36.98044 -36.60137 -33.58215 -33.23802 -30.89423 -30.34240 -29.98074 -27.44454 -26.63211 -25.89731 -23.96445 -22.74308 -21.89693 -21.43970 -20.89112 -20.12239 -18.18294 -17.72207 -17.03699 -16.34218 -16.23831 -15.90037 -15.51025 -15.07174 -14.69041 -14.46915 -14.42091 -14.31526 -13.90685 -13.81496 -13.49411 -13.00133 -12.81437 -12.55008 -12.40550 -12.23937 -11.98175 -11.92863 -11.84863 -11.56537 -11.14073 -11.00892 -10.90944 -10.65638 -10.53997 -10.34703 -10.09844 -9.77398 -9.55453 -9.35408 -9.04368 -8.77776 -8.64626 -8.31003 -8.21313 -5.94481 -3.97721 1.41775 1.67098 2.36393 2.44827 2.49431 2.72209 3.33398 3.40405 3.44155 3.89148 4.05270 4.18273 4.36557 4.38909 4.44599 4.52754 4.64146 4.72902 4.76656 4.91983 5.03149 5.18482 5.28632 5.37884 5.40794 5.42291 5.48521 5.56636 5.72964 5.82740 5.83033 6.11342 6.13478 6.16561 6.35769 6.48538 6.85172 7.09147 7.35768 7.48276 7.59508 7.79187 7.94610 8.05377 8.14436 8.46955 9.10238 9.65658 11.16855 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.002472 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.164688 B =11325.890511 C =13153.670403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.034 3.966 10 C 0.028 3.972 11 N -0.453 5.453 12 C 0.008 3.992 13 C 0.134 3.866 14 C -0.139 4.139 15 C 0.100 3.900 16 N -0.622 5.622 17 C 0.522 3.478 18 O -0.476 6.476 19 C 0.126 3.874 20 N -0.356 5.356 21 C 0.069 3.931 22 C -0.183 4.183 23 Cl -0.046 7.046 24 C 0.060 3.940 25 N -0.242 5.242 26 C -0.001 4.001 27 H 0.260 0.740 28 H 0.024 0.976 29 H 0.014 0.986 30 H 0.032 0.968 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.182 0.818 41 H 0.192 0.808 42 H 0.085 0.915 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 -28.928 2.883 29.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.003 4.003 10 C -0.099 4.099 11 N -0.175 5.175 12 C -0.122 4.122 13 C 0.047 3.953 14 C -0.177 4.177 15 C -0.023 4.023 16 N -0.360 5.360 17 C 0.308 3.692 18 O -0.347 6.347 19 C 0.001 3.999 20 N -0.138 5.138 21 C -0.077 4.077 22 C -0.222 4.222 23 Cl -0.018 7.018 24 C -0.128 4.128 25 N -0.062 5.062 26 C -0.131 4.131 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.032 0.968 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.199 0.801 41 H 0.209 0.791 42 H 0.103 0.897 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.641 -27.402 2.527 27.567 hybrid contribution 0.953 0.263 -0.176 1.004 sum -0.688 -27.139 2.351 27.249 Atomic orbital electron populations 1.70001 1.06036 1.26407 1.50609 1.25017 0.94823 0.99188 0.95378 0.86542 0.80017 0.83885 0.77579 1.19808 1.20965 1.21042 1.21238 0.92910 0.91118 1.50850 0.92809 1.18943 0.93771 0.89803 0.97822 1.22900 0.97163 0.90561 0.99312 1.69178 1.32431 1.01404 1.14470 1.24035 1.03031 0.91156 0.93978 1.22337 0.86948 0.90299 0.95667 1.23204 0.95898 0.97910 1.00712 1.23012 0.94992 0.98536 0.85728 1.49246 1.37627 1.30738 1.18379 1.19927 0.80028 0.86552 0.82733 1.90909 1.65928 1.45826 1.31987 1.21423 0.93035 0.99926 0.85536 1.47853 1.36366 1.09925 1.19685 1.22153 0.99962 0.94591 0.91011 1.20744 1.10171 0.95080 0.96200 1.98321 1.90761 1.70346 1.42361 1.23985 1.00090 0.93414 0.95327 1.77782 1.07559 1.08379 1.12477 1.23873 0.96032 0.93357 0.99831 0.93058 0.95791 0.96798 0.95012 0.92227 0.89980 0.89785 0.88322 0.88671 0.89348 0.90267 0.85781 0.86583 0.80056 0.79106 0.89650 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.04 13.29 55.43 0.74 -27.30 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.40 9.11 -34.44 -0.31 -15.71 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.95 5.30 -27.88 -0.15 0.80 16 10 C 0.03 0.63 4.75 -3.82 -0.02 0.61 16 11 N -0.45 -9.00 6.33 -244.53 -1.55 -10.55 16 12 C 0.01 0.13 7.62 -6.89 -0.05 0.08 16 13 C 0.13 1.64 1.69 -140.74 -0.24 1.41 16 14 C -0.14 -0.96 8.28 -26.62 -0.22 -1.18 16 15 C 0.10 0.61 8.43 -10.29 -0.09 0.52 16 16 N -0.62 -7.00 3.70 -176.43 -0.65 -7.65 16 17 C 0.52 7.03 8.10 -10.99 -0.09 6.94 16 18 O -0.48 -9.28 15.97 5.56 0.09 -9.19 16 19 C 0.13 1.08 6.83 -5.20 -0.04 1.05 16 20 N -0.36 -4.13 3.40 -62.51 -0.21 -4.34 16 21 C 0.07 0.65 11.43 -17.16 -0.20 0.46 16 22 C -0.18 -1.98 6.65 -39.97 -0.27 -2.25 16 23 Cl -0.05 -0.44 29.30 -51.86 -1.52 -1.95 16 24 C 0.06 0.75 12.02 -17.33 -0.21 0.54 16 25 N -0.24 -3.65 11.65 30.64 0.36 -3.29 16 26 C 0.00 -0.02 7.28 -6.89 -0.05 -0.07 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.66 7.31 -51.93 -0.38 0.28 16 31 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 32 H 0.08 1.15 7.42 -51.93 -0.39 0.77 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.12 0.50 8.07 -51.93 -0.42 0.08 16 39 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.18 0.96 8.06 -52.48 -0.42 0.53 16 41 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 42 H 0.09 1.47 7.91 -51.93 -0.41 1.06 16 43 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -39.73 381.44 -10.23 -49.96 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -6.19 Total: -3.49 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -2.02 Total: -5.18 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -1.32 Total: -53.14 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.52 Total: -1.95 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.73 -10.23 -49.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.810 kcal (2) G-P(sol) polarization free energy of solvation -39.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds