Wall clock time and date at job start Tue Mar 31 2020 20:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48498 * 109.46722 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47349 * 300.00141 * 3 2 1 6 6 H 1.48499 * 109.46875 * 60.00478 * 3 2 1 7 7 C 1.37878 * 119.99530 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99509 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00511 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47198 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.47667 * 110.99749 * 266.28361 * 11 10 9 13 13 C 1.52554 * 87.65048 * 222.04277 * 12 11 10 14 14 C 1.52528 * 121.71143 * 149.57682 * 13 12 11 15 15 C 1.53682 * 82.99329 * 102.33904 * 14 13 12 16 16 N 1.46005 * 121.84700 * 260.94364 * 13 12 11 17 17 C 1.34780 * 136.23002 * 78.79080 * 16 13 12 18 18 O 1.21279 * 119.99675 * 0.02562 * 17 16 13 19 19 C 1.50694 * 120.00398 * 180.02562 * 17 16 13 20 20 N 1.46495 * 109.47365 * 179.97438 * 19 17 16 21 21 C 1.35046 * 126.03537 * 124.99942 * 20 19 17 22 22 C 1.35381 * 107.73052 * 179.97438 * 21 20 19 23 23 Cl 1.73594 * 126.04533 * 179.97438 * 22 21 20 24 24 C 1.39932 * 107.90388 * 0.02562 * 22 21 20 25 25 N 1.30856 * 108.21247 * 359.75195 * 24 22 21 26 26 C 1.47665 * 111.00115 * 170.00321 * 11 10 9 27 27 H 0.97001 * 119.99851 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46594 * 60.00822 * 9 7 2 29 29 H 1.08996 * 109.47202 * 300.00680 * 9 7 2 30 30 H 1.08993 * 109.47007 * 60.00472 * 10 9 7 31 31 H 1.08996 * 109.47340 * 300.00278 * 10 9 7 32 32 H 1.08998 * 113.52323 * 336.73464 * 12 11 10 33 33 H 1.09004 * 113.52460 * 107.34954 * 12 11 10 34 34 H 1.08997 * 114.28674 * 215.86845 * 14 13 12 35 35 H 1.08992 * 114.29428 * 348.80300 * 14 13 12 36 36 H 1.09010 * 113.41742 * 270.28416 * 15 14 13 37 37 H 1.09002 * 113.46525 * 140.01072 * 15 14 13 38 38 H 1.09001 * 109.47481 * 300.00164 * 19 17 16 39 39 H 1.08999 * 109.46896 * 60.00086 * 19 17 16 40 40 H 1.08004 * 126.13817 * 359.97438 * 21 20 19 41 41 H 1.07997 * 125.89165 * 180.02562 * 24 22 21 42 42 H 1.09003 * 113.51873 * 252.65186 * 26 11 10 43 43 H 1.09003 * 113.52053 * 23.18904 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 1.3230 -5.4377 1.3743 13 6 1.6621 -6.8276 0.8449 14 6 2.3441 -7.8745 1.7197 15 6 0.9227 -8.4518 1.8101 16 7 0.6249 -7.8031 0.5219 17 6 -0.2266 -8.0159 -0.5010 18 8 -0.2234 -7.2704 -1.4576 19 6 -1.1826 -9.1799 -0.4560 20 7 -1.9944 -9.1925 -1.6754 21 6 -2.1231 -10.2273 -2.5335 22 6 -2.9572 -9.8382 -3.5264 23 17 -3.4500 -10.8026 -4.8831 24 6 -3.3509 -8.5209 -3.2661 25 7 -2.7783 -8.1350 -2.1545 26 6 2.4218 -6.0714 -0.2405 27 1 -0.4850 0.8401 -0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8717 -3.6044 0.8894 31 1 2.8719 -3.6044 -0.8904 32 1 2.0558 -5.0513 2.0827 33 1 0.2982 -5.3474 1.7346 34 1 3.0530 -8.5096 1.1887 35 1 2.7317 -7.4877 2.6621 36 1 0.3438 -8.0498 2.6417 37 1 0.8927 -9.5405 1.7641 38 1 -0.6192 -10.1103 -0.3847 39 1 -1.8337 -9.0819 0.4126 40 1 -1.6462 -11.1922 -2.4439 41 1 -4.0162 -7.9269 -3.8750 42 1 2.3169 -6.5116 -1.2321 43 1 3.4590 -5.8600 0.0199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277941542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:27 Heat of formation + Delta-G solvation = 99.315769 kcal Electronic energy + Delta-G solvation = -26449.360006 eV Core-core repulsion = 22559.351608 eV Total energy + Delta-G solvation = -3890.008399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.54412 -42.19180 -39.74195 -38.07639 -37.36687 -35.46395 -34.38749 -32.68070 -31.35107 -30.84013 -28.40484 -28.11767 -27.14318 -25.55133 -23.60487 -23.14409 -22.23686 -21.97943 -21.65166 -19.10469 -18.62654 -18.50038 -17.90048 -17.14641 -17.02322 -16.57721 -16.44424 -16.06266 -15.73810 -15.54267 -15.29705 -15.09456 -14.91194 -14.32047 -14.19885 -14.09130 -13.80876 -13.55274 -13.44400 -13.35261 -13.07019 -12.81968 -12.70434 -12.67481 -12.39679 -12.35451 -12.07564 -11.84596 -11.53413 -11.47761 -11.46284 -11.07091 -11.02559 -10.63693 -10.47122 -9.74915 -9.63559 -9.44424 -8.25373 -6.39579 0.64479 0.94971 1.35254 1.37714 1.47116 1.50992 1.58690 1.70225 1.92031 2.35772 2.99002 3.07108 3.25979 3.35735 3.49639 3.62726 3.81395 3.84253 4.01217 4.08935 4.15161 4.15320 4.35189 4.44507 4.48276 4.52636 4.55066 4.59203 4.59467 4.67292 4.74720 4.95319 5.02622 5.10988 5.28729 5.30167 5.32072 5.40425 5.67265 5.73216 5.79776 6.07762 6.24268 6.50962 6.76609 6.78304 7.13484 7.30631 8.87639 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.002472 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.164688 B =11325.890511 C =13153.670403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.976 3.024 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.044 3.956 10 C 0.048 3.952 11 N -0.503 5.503 12 C 0.006 3.994 13 C 0.136 3.864 14 C -0.114 4.114 15 C 0.104 3.896 16 N -0.628 5.628 17 C 0.510 3.490 18 O -0.555 6.555 19 C 0.128 3.872 20 N -0.361 5.361 21 C 0.088 3.912 22 C -0.202 4.202 23 Cl -0.037 7.037 24 C 0.047 3.953 25 N -0.307 5.307 26 C 0.002 3.998 27 H 0.264 0.736 28 H -0.028 1.028 29 H -0.016 1.016 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.183 0.817 39 H 0.138 0.862 40 H 0.230 0.770 41 H 0.197 0.803 42 H 0.058 0.942 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.445 -31.854 5.097 32.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.180 1.180 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.006 3.994 10 C -0.080 4.080 11 N -0.226 5.226 12 C -0.124 4.124 13 C 0.049 3.951 14 C -0.152 4.152 15 C -0.016 4.016 16 N -0.364 5.364 17 C 0.298 3.702 18 O -0.431 6.431 19 C 0.005 3.995 20 N -0.143 5.143 21 C -0.058 4.058 22 C -0.241 4.241 23 Cl -0.009 7.009 24 C -0.140 4.140 25 N -0.127 5.127 26 C -0.128 4.128 27 H 0.073 0.927 28 H -0.009 1.009 29 H 0.003 0.997 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.145 0.855 38 H 0.200 0.800 39 H 0.155 0.845 40 H 0.246 0.754 41 H 0.214 0.786 42 H 0.077 0.923 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.748 -30.377 4.801 30.763 hybrid contribution 0.175 1.137 -0.872 1.444 sum 0.923 -29.240 3.929 29.517 Atomic orbital electron populations 1.70169 1.08240 1.27861 1.51371 1.26140 0.95800 1.03929 0.94413 0.85248 0.79062 0.77909 0.77883 1.18021 1.20522 1.19869 1.21660 0.93622 0.91958 1.51035 0.91592 1.18751 0.94046 0.92693 0.93870 1.22514 0.95538 0.90240 0.99721 1.69051 1.34087 1.01419 1.18008 1.24066 1.02313 0.93843 0.92187 1.22434 0.87747 0.90401 0.94531 1.23273 0.96666 0.95080 1.00204 1.23361 0.93985 1.01200 0.83099 1.49583 1.36459 1.30590 1.19719 1.20909 0.80110 0.87061 0.82081 1.90880 1.68264 1.48818 1.35137 1.21810 0.92416 1.00097 0.85169 1.48103 1.36044 1.09539 1.20660 1.22881 0.98311 0.95384 0.89269 1.20890 1.11217 0.94683 0.97300 1.98316 1.90806 1.69815 1.41997 1.24241 1.00022 0.94606 0.95112 1.77687 1.09811 1.11065 1.14180 1.23875 0.96914 0.92098 0.99905 0.92713 1.00945 0.99719 0.93099 0.92997 0.88192 0.92004 0.86356 0.86346 0.88352 0.85545 0.80017 0.84481 0.75369 0.78610 0.92308 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.31 13.29 21.45 0.28 -61.02 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 3 Si 0.98 46.27 29.54 68.60 2.03 48.29 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -33.15 9.11 25.60 0.23 -32.91 16 8 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 9 C 0.04 2.62 5.30 29.85 0.16 2.78 16 10 C 0.05 2.23 4.75 86.30 0.41 2.64 16 11 N -0.50 -21.11 6.33 -927.55 -5.87 -26.98 16 12 C 0.01 0.19 7.62 83.90 0.64 0.83 16 13 C 0.14 3.15 1.69 -0.98 0.00 3.14 16 14 C -0.11 -1.04 8.28 30.67 0.25 -0.78 16 15 C 0.10 0.75 8.43 81.91 0.69 1.44 16 16 N -0.63 -12.88 3.70 -830.48 -3.07 -15.95 16 17 C 0.51 13.49 8.10 87.65 0.71 14.20 16 18 O -0.56 -22.94 15.97 -3.03 -0.05 -22.99 16 19 C 0.13 1.87 6.83 85.63 0.58 2.45 16 20 N -0.36 -8.02 3.40 -351.68 -1.19 -9.22 16 21 C 0.09 1.48 11.43 83.54 0.95 2.43 16 22 C -0.20 -4.30 6.65 22.02 0.15 -4.15 16 23 Cl -0.04 -0.68 29.30 -2.72 -0.08 -0.76 16 24 C 0.05 1.26 12.02 85.25 1.02 2.29 16 25 N -0.31 -9.74 11.65 -56.97 -0.66 -10.40 16 26 C 0.00 0.05 7.28 83.90 0.61 0.66 16 27 H 0.26 16.07 8.31 -92.71 -0.77 15.29 16 28 H -0.03 -1.92 8.14 -2.39 -0.02 -1.94 16 29 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 30 H 0.05 2.12 7.31 -2.39 -0.02 2.10 16 31 H 0.05 2.43 8.08 -2.39 -0.02 2.41 16 32 H 0.10 2.72 7.42 -2.39 -0.02 2.70 16 33 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.18 0.42 8.07 -2.39 -0.02 0.40 16 39 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.23 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.20 4.47 8.06 -2.91 -0.02 4.45 16 42 H 0.06 2.13 7.91 -2.39 -0.02 2.11 16 43 H 0.10 2.53 7.91 -2.39 -0.02 2.51 16 Total: -1.00 -98.47 381.44 -0.72 -99.20 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.01 Total: 4.67 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 6.88 Total: -4.84 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -10.51 Total: -123.57 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -98.47 -0.72 -99.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.512 kcal (2) G-P(sol) polarization free energy of solvation -98.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds