Wall clock time and date at job start Tue Mar 31 2020 20:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99938 * 2 1 4 4 H 1.48497 * 109.47339 * 239.99836 * 3 2 1 5 5 H 1.48502 * 109.47235 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47359 * 119.99862 * 3 2 1 7 7 C 1.38795 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00551 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00085 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47461 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99430 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00382 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00024 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47167 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.50394 * 305.07604 * 15 14 13 17 17 C 1.53036 * 109.50538 * 184.99728 * 15 14 13 18 18 N 1.46849 * 109.52449 * 180.84249 * 17 15 14 19 19 C 1.46898 * 111.00124 * 185.84161 * 18 17 15 20 20 C 1.53005 * 109.47311 * 75.71788 * 19 18 17 21 21 O 1.42900 * 109.47154 * 64.58855 * 20 19 18 22 22 C 1.46847 * 111.20004 * 61.74151 * 18 17 15 23 23 C 1.53030 * 109.52226 * 298.25874 * 22 18 17 24 24 C 1.53125 * 109.53469 * 65.17531 * 15 14 13 25 25 F 1.39898 * 109.52337 * 297.51997 * 24 15 14 26 26 F 1.39901 * 109.52224 * 57.64703 * 24 15 14 27 27 H 0.97006 * 120.00495 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46855 * 60.00194 * 10 9 7 29 29 H 1.09006 * 109.47378 * 300.00339 * 10 9 7 30 30 H 0.97002 * 119.99966 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.47243 * 59.99780 * 14 13 11 32 32 H 1.09006 * 109.47144 * 299.99830 * 14 13 11 33 33 H 1.09000 * 109.46168 * 60.82211 * 17 15 14 34 34 H 1.08996 * 109.46364 * 300.85915 * 17 15 14 35 35 H 1.08993 * 109.47511 * 195.72073 * 19 18 17 36 36 H 1.08997 * 109.47077 * 315.72037 * 19 18 17 37 37 H 1.08996 * 109.47330 * 184.59023 * 20 19 18 38 38 H 1.09009 * 109.46762 * 304.59212 * 20 19 18 39 39 H 0.96701 * 114.00167 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.45617 * 58.27355 * 22 18 17 41 41 H 1.08994 * 109.46009 * 178.24428 * 22 18 17 42 42 H 1.08995 * 109.50735 * 299.24117 * 23 22 18 43 43 H 1.09007 * 109.53841 * 179.13751 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 2.3305 -7.7150 0.0019 15 6 3.5025 -8.6985 0.0020 16 1 4.1609 -8.4801 -0.8388 17 6 2.9703 -10.1278 -0.1236 18 7 4.0936 -11.0734 -0.1033 19 6 3.6325 -12.4442 -0.3605 20 6 3.3262 -12.6082 -1.8505 21 8 4.5311 -12.4582 -2.6039 22 6 4.8307 -10.9952 1.1644 23 6 5.4185 -9.5918 1.3284 24 6 4.2841 -8.5634 1.3118 25 9 4.8201 -7.2746 1.4056 26 9 3.4272 -8.7932 2.3934 27 1 -0.4851 0.8401 -0.0004 28 1 3.1244 -3.7313 0.8906 29 1 3.1245 -3.7313 -0.8895 30 1 3.8010 -6.1835 0.0015 31 1 1.7223 -7.8753 -0.8884 32 1 1.7215 -7.8749 0.8916 33 1 2.4253 -10.2312 -1.0619 34 1 2.3012 -10.3407 0.7100 35 1 4.4107 -13.1499 -0.0698 36 1 2.7304 -12.6389 0.2195 37 1 2.9073 -13.5986 -2.0285 38 1 2.6076 -11.8488 -2.1594 39 1 4.4117 -12.5497 -3.5592 40 1 4.1528 -11.2041 1.9920 41 1 5.6370 -11.7286 1.1615 42 1 6.1069 -9.3875 0.5085 43 1 5.9528 -9.5289 2.2765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278740459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:01 Heat of formation + Delta-G solvation = -212.727929 kcal Electronic energy + Delta-G solvation = -27632.860306 eV Core-core repulsion = 23280.675198 eV Total energy + Delta-G solvation = -4352.185109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.11495 -48.09546 -40.73471 -39.88220 -37.51781 -36.31484 -34.59145 -33.84200 -32.90935 -30.80083 -29.44745 -27.72992 -26.75262 -25.23245 -23.48234 -22.30263 -21.93441 -21.08131 -19.85150 -18.55255 -18.36431 -18.02116 -17.85552 -17.62003 -17.13763 -16.88112 -16.74997 -16.48567 -16.15332 -15.66305 -15.39882 -15.07125 -14.85321 -14.70163 -14.61217 -14.45138 -14.39324 -14.09895 -13.78377 -13.68007 -13.49261 -13.30300 -13.17898 -13.14827 -12.86680 -12.68405 -12.59696 -12.40844 -12.30507 -11.76937 -11.74096 -11.32797 -11.13377 -11.01562 -10.75649 -10.30400 -10.20747 -9.36697 -8.67952 -8.34906 -6.13502 1.24895 1.43978 1.45252 1.55424 1.56451 2.15914 2.27220 2.60060 2.74180 2.98072 2.98922 3.14282 3.31595 3.36455 3.50609 3.78425 3.85546 4.00132 4.06127 4.13251 4.20311 4.26082 4.28748 4.39844 4.43295 4.48176 4.52559 4.59660 4.61707 4.76423 4.77263 4.81504 4.88606 4.95732 5.02257 5.32026 5.41131 5.94863 5.97466 6.19308 6.40555 7.03557 7.05932 7.16547 8.74167 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.002234 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.851185 B =12531.638786 C =12965.319392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.147 6.147 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.563 6.563 13 N -0.716 5.716 14 C 0.122 3.878 15 C -0.120 4.120 16 H 0.129 0.871 17 C 0.065 3.935 18 N -0.535 5.535 19 C 0.051 3.949 20 C 0.079 3.921 21 O -0.583 6.583 22 C 0.057 3.943 23 C -0.147 4.147 24 C 0.279 3.721 25 F -0.206 7.206 26 F -0.210 7.210 27 H 0.272 0.728 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.414 0.586 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.390 0.610 40 H 0.041 0.959 41 H 0.106 0.894 42 H 0.114 0.886 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.076 -29.866 -1.727 33.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.080 5.920 10 C -0.281 4.281 11 C 0.321 3.679 12 O -0.441 6.441 13 N -0.372 5.372 14 C -0.003 4.003 15 C -0.140 4.140 16 H 0.147 0.853 17 C -0.063 4.063 18 N -0.260 5.260 19 C -0.076 4.076 20 C 0.001 3.999 21 O -0.390 6.390 22 C -0.071 4.071 23 C -0.185 4.185 24 C 0.243 3.757 25 F -0.187 7.187 26 F -0.192 7.192 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.253 0.747 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.239 0.761 40 H 0.059 0.941 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.515 -29.903 -1.468 32.450 hybrid contribution 0.890 1.314 0.396 1.636 sum 13.406 -28.589 -1.072 31.594 Atomic orbital electron populations 1.70175 1.07958 1.28716 1.47881 1.26144 0.96005 1.03342 0.93679 0.84989 0.77801 0.75600 0.79508 1.18563 1.20267 1.18749 1.23173 0.95351 0.91994 1.59079 0.89974 1.85520 1.10324 0.99123 1.97052 1.23367 1.03689 0.94377 1.06687 1.20053 0.86181 0.86675 0.75024 1.90681 1.17188 1.86119 1.50146 1.45936 1.10653 1.05006 1.75637 1.21336 0.96022 0.79826 1.03090 1.22370 0.97569 0.97003 0.97030 0.85315 1.22005 0.92536 0.88556 1.03249 1.61889 1.24410 1.06289 1.33387 1.22245 1.00836 0.88870 0.95656 1.22239 0.86615 1.00025 0.91014 1.86519 1.33259 1.95806 1.23444 1.22113 0.98741 0.96168 0.90095 1.22606 0.96124 0.93198 1.06610 1.21587 0.88751 0.80327 0.85061 1.92920 1.86944 1.42217 1.96601 1.92979 1.72856 1.94478 1.58838 0.91940 0.87696 0.87045 0.74687 0.89794 0.92359 0.87873 0.93733 0.89408 0.91816 0.91746 0.93466 0.76140 0.94070 0.87541 0.86780 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.75 13.22 21.65 0.29 -56.46 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 44.28 29.55 68.60 2.03 46.31 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.55 -32.02 9.50 67.95 0.65 -31.38 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 10 C -0.13 -5.47 6.16 71.24 0.44 -5.03 16 11 C 0.53 21.06 7.85 87.66 0.69 21.75 16 12 O -0.56 -27.04 15.86 -3.04 -0.05 -27.09 16 13 N -0.72 -20.32 5.01 -463.07 -2.32 -22.64 16 14 C 0.12 2.88 5.00 86.38 0.43 3.31 16 15 C -0.12 -1.97 2.15 -10.74 -0.02 -1.99 16 16 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 17 C 0.07 0.86 4.46 86.33 0.39 1.25 16 18 N -0.54 -6.31 4.53 -896.39 -4.06 -10.37 16 19 C 0.05 0.46 5.39 86.31 0.47 0.93 16 20 C 0.08 0.66 7.24 71.98 0.52 1.18 16 21 O -0.58 -6.73 13.60 -148.98 -2.03 -8.76 16 22 C 0.06 0.60 5.32 86.32 0.46 1.06 16 23 C -0.15 -1.79 5.62 30.65 0.17 -1.62 16 24 C 0.28 5.09 1.65 30.68 0.05 5.14 16 25 F -0.21 -4.52 14.48 44.97 0.65 -3.87 16 26 F -0.21 -4.87 15.54 44.97 0.70 -4.17 16 27 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 28 H 0.10 4.10 8.14 -2.39 -0.02 4.08 16 29 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 30 H 0.41 9.83 6.50 -92.71 -0.60 9.23 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.61 7.60 -2.38 -0.02 1.59 16 33 H 0.10 1.17 6.65 -2.39 -0.02 1.16 16 34 H 0.04 0.65 7.88 -2.39 -0.02 0.63 16 35 H 0.09 0.75 7.79 -2.39 -0.02 0.73 16 36 H 0.06 0.46 8.00 -2.39 -0.02 0.44 16 37 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.05 0.38 6.71 -2.38 -0.02 0.37 16 39 H 0.39 1.53 9.12 -74.06 -0.68 0.85 16 40 H 0.04 0.48 7.88 -2.39 -0.02 0.46 16 41 H 0.11 0.83 7.93 -2.39 -0.02 0.81 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -80.95 368.66 -1.48 -82.43 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -0.23 Total: 18.36 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.70 Total: -4.18 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -6.09 Total: -89.47 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -2.07 Total: -35.84 kcal Atomic # 9 Polarization: -9.38 SS G_CDS: 1.35 Total: -8.03 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -80.95 -1.48 -82.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278740459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.295 kcal (2) G-P(sol) polarization free energy of solvation -80.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds