Wall clock time and date at job start Tue Mar 31 2020 20:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00261 * 2 1 4 4 H 1.48507 * 109.46938 * 239.99946 * 3 2 1 5 5 H 1.48499 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47340 * 119.99719 * 3 2 1 7 7 C 1.37884 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99623 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46710 * 179.97438 * 9 7 2 11 11 N 1.39908 * 125.81126 * 269.98078 * 10 9 7 12 12 C 1.30461 * 109.22025 * 179.75689 * 11 10 9 13 13 C 1.41090 * 108.29967 * 0.41087 * 12 11 10 14 14 C 1.47171 * 126.47705 * 179.85586 * 13 12 11 15 15 O 1.21643 * 119.99605 * 179.68206 * 14 13 12 16 16 N 1.34773 * 120.00314 * 359.68699 * 14 13 12 17 17 N 1.40104 * 119.99916 * 180.02562 * 16 14 13 18 18 C 1.35308 * 125.87080 * 359.97438 * 17 16 14 19 19 C 1.35347 * 106.17713 * 180.02562 * 18 17 16 20 20 N 1.33774 * 106.49812 * 0.02562 * 19 18 17 21 21 N 1.28637 * 108.88333 * 0.02562 * 20 19 18 22 22 C 1.35174 * 125.80396 * 90.00024 * 10 9 7 23 23 C 1.47740 * 126.47433 * 359.96089 * 22 10 9 24 24 C 1.39616 * 120.14746 * 314.72369 * 23 22 10 25 25 C 1.37947 * 119.84769 * 179.69691 * 24 23 22 26 26 C 1.38368 * 120.15078 * 0.57723 * 25 24 23 27 27 C 1.38363 * 120.29799 * 359.72041 * 26 25 24 28 28 C 1.37955 * 120.14878 * 359.97438 * 27 26 25 29 29 H 0.96996 * 119.99711 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47318 * 60.00029 * 9 7 2 31 31 H 1.08997 * 109.47577 * 299.99431 * 9 7 2 32 32 H 1.07998 * 125.85189 * 180.23822 * 12 11 10 33 33 H 0.96996 * 119.99834 * 359.97438 * 16 14 13 34 34 H 1.07998 * 126.91148 * 0.02562 * 18 17 16 35 35 H 1.08002 * 126.75540 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.07686 * 359.97438 * 24 23 22 37 37 H 1.08003 * 119.92789 * 180.29950 * 25 24 23 38 38 H 1.08000 * 119.85315 * 179.69490 * 26 25 24 39 39 H 1.08001 * 119.92278 * 179.97438 * 27 26 25 40 40 H 1.07999 * 120.07128 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 7 2.7345 -4.2353 -1.1341 12 6 3.5510 -5.1822 -0.7615 13 6 3.5742 -5.2177 0.6487 14 6 4.3600 -6.1365 1.4879 15 8 4.2948 -6.0591 2.7002 16 7 5.1518 -7.0635 0.9135 17 7 5.8994 -7.9385 1.7125 18 6 5.9168 -7.9578 3.0653 19 6 6.7660 -8.9512 3.4174 20 7 7.2211 -9.4837 2.2777 21 7 6.6894 -8.8609 1.2857 22 6 2.7167 -4.2139 1.0968 23 6 2.4251 -3.8715 2.5041 24 6 2.4135 -2.5366 2.9131 25 6 2.1343 -2.2236 4.2273 26 6 1.8779 -3.2297 5.1420 27 6 1.8939 -4.5550 4.7447 28 6 2.1655 -4.8817 3.4322 29 1 -0.4849 0.8400 0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5568 0.8903 32 1 4.1109 -5.8298 -1.4199 33 1 5.2036 -7.1254 -0.0531 34 1 5.3642 -7.3108 3.7304 35 1 7.0252 -9.2544 4.4210 36 1 2.6181 -1.7507 2.2012 37 1 2.1201 -1.1912 4.5439 38 1 1.6647 -2.9794 6.1707 39 1 1.6934 -5.3354 5.4638 40 1 2.1773 -5.9165 3.1234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298236813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:03 Heat of formation + Delta-G solvation = 213.602401 kcal Electronic energy + Delta-G solvation = -28470.041653 eV Core-core repulsion = 24483.881601 eV Total energy + Delta-G solvation = -3986.160052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.41453 -41.23825 -39.37801 -38.47821 -35.67481 -34.17418 -32.44159 -32.01611 -31.25491 -31.10335 -30.48511 -28.65956 -27.60568 -24.53426 -23.39696 -23.04975 -22.68822 -22.36518 -21.86909 -20.15770 -19.49412 -18.78777 -17.63369 -16.97603 -16.84282 -16.55078 -15.69355 -15.29480 -15.11467 -14.98860 -14.85118 -14.48821 -14.36599 -14.21168 -13.83253 -13.54868 -13.10036 -12.86366 -12.49311 -12.39052 -12.00249 -11.91007 -11.76845 -11.33538 -11.21900 -11.17637 -11.01812 -10.73376 -10.61651 -10.49406 -10.17921 -9.96627 -9.58106 -9.39711 -9.35509 -8.86029 -8.54407 -8.50191 -8.09207 -6.49515 -4.59107 0.80029 1.04245 1.47564 1.80222 1.99284 2.40604 2.46035 2.94460 3.08582 3.14627 3.18535 3.32549 3.71457 4.08887 4.15417 4.46023 4.63810 4.66926 4.83968 4.95333 5.03688 5.21721 5.22356 5.26473 5.32283 5.39552 5.50328 5.70140 5.79570 5.97258 5.99321 6.20812 6.37864 6.41735 6.60035 6.68712 6.73055 6.79762 6.85272 6.86673 6.89942 7.26209 7.31359 7.48970 7.57543 7.81448 8.01077 8.30680 8.44672 9.07910 10.58197 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.003497 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.075541 B = 8004.485514 C = 9159.698661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.249 3.751 10 N -0.299 5.299 11 N -0.280 5.280 12 C 0.064 3.936 13 C -0.316 4.316 14 C 0.612 3.388 15 O -0.518 6.518 16 N -0.505 5.505 17 N -0.086 5.086 18 C -0.025 4.025 19 C -0.057 4.057 20 N -0.258 5.258 21 N -0.103 5.103 22 C 0.221 3.779 23 C -0.056 4.056 24 C -0.075 4.075 25 C -0.132 4.132 26 C -0.104 4.104 27 C -0.139 4.139 28 C -0.047 4.047 29 H 0.272 0.728 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.183 0.817 33 H 0.439 0.561 34 H 0.216 0.784 35 H 0.197 0.803 36 H 0.152 0.848 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.006 -9.845 7.413 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.085 0.915 9 C 0.132 3.868 10 N -0.074 5.074 11 N -0.099 5.099 12 C -0.123 4.123 13 C -0.334 4.334 14 C 0.404 3.596 15 O -0.392 6.392 16 N -0.259 5.259 17 N 0.038 4.962 18 C -0.177 4.177 19 C -0.216 4.216 20 N -0.125 5.125 21 N -0.084 5.084 22 C 0.083 3.917 23 C -0.058 4.058 24 C -0.093 4.093 25 C -0.150 4.150 26 C -0.123 4.123 27 C -0.157 4.157 28 C -0.066 4.066 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.200 0.800 33 H 0.283 0.717 34 H 0.232 0.768 35 H 0.214 0.786 36 H 0.170 0.830 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.683 -9.571 5.899 12.179 hybrid contribution 0.361 1.057 0.859 1.409 sum 5.043 -8.514 6.758 11.983 Atomic orbital electron populations 1.69897 1.06082 1.28278 1.47507 1.24906 0.94972 0.99452 0.93902 0.86421 0.79548 0.81663 0.79243 1.19760 1.20731 1.19632 1.21127 0.93665 0.89152 1.54638 0.91452 1.20044 0.86018 0.79988 1.00713 1.49786 1.31512 1.24885 1.01212 1.77217 1.13724 1.09874 1.09068 1.23776 0.98245 0.97516 0.92735 1.19088 1.13767 1.07611 0.92926 1.17626 0.76733 0.77443 0.87808 1.90740 1.64808 1.70103 1.13507 1.45469 1.43258 1.29979 1.07218 1.46034 1.26648 1.19572 1.03919 1.24439 1.05703 1.04640 0.82894 1.23599 1.00763 0.97890 0.99390 1.75147 1.19871 1.20841 0.96672 1.78512 1.06484 1.00589 1.22845 1.19727 0.92358 0.90819 0.88789 1.17918 1.04984 0.94158 0.88757 1.21948 0.94593 0.95929 0.96855 1.21047 1.01350 0.99331 0.93289 1.21242 0.98726 0.93077 0.99234 1.20907 1.02832 0.96246 0.95745 1.21051 0.94759 0.98360 0.92434 0.91798 0.92096 0.92110 0.79996 0.71673 0.76771 0.78612 0.83011 0.85944 0.86453 0.86250 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.68 13.29 55.43 0.74 -21.94 16 2 C 0.07 1.80 5.46 -17.81 -0.10 1.70 16 3 Si 0.91 19.27 29.54 -169.99 -5.02 14.25 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.55 -13.28 7.23 -34.44 -0.25 -13.53 16 8 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.25 5.65 5.42 -5.19 -0.03 5.62 16 10 N -0.30 -6.04 3.59 -58.19 -0.21 -6.25 16 11 N -0.28 -5.26 12.48 30.82 0.38 -4.87 16 12 C 0.06 0.93 11.48 -17.05 -0.20 0.74 16 13 C -0.32 -4.91 6.13 -104.75 -0.64 -5.55 16 14 C 0.61 8.55 7.76 -12.64 -0.10 8.45 16 15 O -0.52 -7.86 10.07 5.24 0.05 -7.80 16 16 N -0.51 -5.99 6.62 30.37 0.20 -5.79 16 17 N -0.09 -1.14 4.54 30.52 0.14 -1.00 16 18 C -0.02 -0.30 10.50 -17.05 -0.18 -0.48 16 19 C -0.06 -0.65 12.05 -17.74 -0.21 -0.86 16 20 N -0.26 -3.62 12.41 30.24 0.38 -3.25 16 21 N -0.10 -1.48 13.34 60.35 0.81 -0.67 16 22 C 0.22 4.04 6.50 -82.07 -0.53 3.50 16 23 C -0.06 -0.99 5.07 -104.99 -0.53 -1.52 16 24 C -0.07 -1.34 8.64 -39.17 -0.34 -1.68 16 25 C -0.13 -2.03 10.03 -39.64 -0.40 -2.43 16 26 C -0.10 -1.40 10.04 -39.49 -0.40 -1.80 16 27 C -0.14 -1.88 10.03 -39.64 -0.40 -2.28 16 28 C -0.05 -0.72 7.54 -39.17 -0.30 -1.02 16 29 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 30 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.06 1.42 7.32 -51.93 -0.38 1.04 16 32 H 0.18 1.70 7.49 -52.49 -0.39 1.31 16 33 H 0.44 3.96 7.77 -182.60 -1.42 2.54 16 34 H 0.22 2.51 5.85 -52.49 -0.31 2.21 16 35 H 0.20 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.15 3.06 5.56 -52.49 -0.29 2.77 16 37 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.82 6.77 -52.49 -0.36 1.47 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -28.89 348.35 -6.69 -35.58 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -4.81 Total: 7.64 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -4.59 Total: -11.13 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 2.43 Total: -43.78 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.05 Total: -7.80 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.89 -6.69 -35.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298236813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.184 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 220.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 213.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds