Wall clock time and date at job start Tue Mar 31 2020 20:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00261 * 2 1 4 4 H 1.48507 * 109.46938 * 239.99946 * 3 2 1 5 5 H 1.48499 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47340 * 119.99719 * 3 2 1 7 7 C 1.37884 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99857 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99623 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46710 * 179.97438 * 9 7 2 11 11 N 1.39908 * 125.81126 * 269.98078 * 10 9 7 12 12 C 1.30461 * 109.22025 * 179.75689 * 11 10 9 13 13 C 1.41090 * 108.29967 * 0.41087 * 12 11 10 14 14 C 1.47171 * 126.47705 * 179.85586 * 13 12 11 15 15 O 1.21643 * 119.99605 * 179.68206 * 14 13 12 16 16 N 1.34773 * 120.00314 * 359.68699 * 14 13 12 17 17 N 1.40104 * 119.99916 * 180.02562 * 16 14 13 18 18 C 1.35308 * 125.87080 * 359.97438 * 17 16 14 19 19 C 1.35347 * 106.17713 * 180.02562 * 18 17 16 20 20 N 1.33774 * 106.49812 * 0.02562 * 19 18 17 21 21 N 1.28637 * 108.88333 * 0.02562 * 20 19 18 22 22 C 1.35174 * 125.80396 * 90.00024 * 10 9 7 23 23 C 1.47740 * 126.47433 * 359.96089 * 22 10 9 24 24 C 1.39616 * 120.14746 * 314.72369 * 23 22 10 25 25 C 1.37947 * 119.84769 * 179.69691 * 24 23 22 26 26 C 1.38368 * 120.15078 * 0.57723 * 25 24 23 27 27 C 1.38363 * 120.29799 * 359.72041 * 26 25 24 28 28 C 1.37955 * 120.14878 * 359.97438 * 27 26 25 29 29 H 0.96996 * 119.99711 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47318 * 60.00029 * 9 7 2 31 31 H 1.08997 * 109.47577 * 299.99431 * 9 7 2 32 32 H 1.07998 * 125.85189 * 180.23822 * 12 11 10 33 33 H 0.96996 * 119.99834 * 359.97438 * 16 14 13 34 34 H 1.07998 * 126.91148 * 0.02562 * 18 17 16 35 35 H 1.08002 * 126.75540 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.07686 * 359.97438 * 24 23 22 37 37 H 1.08003 * 119.92789 * 180.29950 * 25 24 23 38 38 H 1.08000 * 119.85315 * 179.69490 * 26 25 24 39 39 H 1.08001 * 119.92278 * 179.97438 * 27 26 25 40 40 H 1.07999 * 120.07128 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 7 2.7345 -4.2353 -1.1341 12 6 3.5510 -5.1822 -0.7615 13 6 3.5742 -5.2177 0.6487 14 6 4.3600 -6.1365 1.4879 15 8 4.2948 -6.0591 2.7002 16 7 5.1518 -7.0635 0.9135 17 7 5.8994 -7.9385 1.7125 18 6 5.9168 -7.9578 3.0653 19 6 6.7660 -8.9512 3.4174 20 7 7.2211 -9.4837 2.2777 21 7 6.6894 -8.8609 1.2857 22 6 2.7167 -4.2139 1.0968 23 6 2.4251 -3.8715 2.5041 24 6 2.4135 -2.5366 2.9131 25 6 2.1343 -2.2236 4.2273 26 6 1.8779 -3.2297 5.1420 27 6 1.8939 -4.5550 4.7447 28 6 2.1655 -4.8817 3.4322 29 1 -0.4849 0.8400 0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5568 0.8903 32 1 4.1109 -5.8298 -1.4199 33 1 5.2036 -7.1254 -0.0531 34 1 5.3642 -7.3108 3.7304 35 1 7.0252 -9.2544 4.4210 36 1 2.6181 -1.7507 2.2012 37 1 2.1201 -1.1912 4.5439 38 1 1.6647 -2.9794 6.1707 39 1 1.6934 -5.3354 5.4638 40 1 2.1773 -5.9165 3.1234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298236813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:02 Heat of formation + Delta-G solvation = 195.469402 kcal Electronic energy + Delta-G solvation = -28470.827959 eV Core-core repulsion = 24483.881601 eV Total energy + Delta-G solvation = -3986.946358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.39505 -42.54965 -40.53293 -39.66476 -36.73086 -35.89193 -33.96411 -33.24314 -32.41493 -32.12444 -31.68191 -29.90211 -29.26298 -25.95918 -24.79416 -24.13285 -23.81111 -23.59374 -22.99579 -21.41063 -20.75824 -19.81753 -18.96914 -18.76746 -17.86766 -17.71693 -16.95640 -16.63121 -16.41789 -16.32335 -15.93471 -15.67207 -15.64176 -15.29907 -15.08276 -14.92902 -14.38124 -14.19225 -14.05107 -13.65157 -13.52430 -13.08342 -12.98889 -12.80295 -12.75223 -12.41149 -12.28503 -12.19747 -11.95212 -11.92255 -11.84473 -11.17718 -10.77951 -10.74369 -10.56009 -10.37479 -9.92393 -9.72446 -9.33834 -8.38999 -6.54291 -0.22053 -0.18650 0.43292 0.60275 0.83997 1.17471 1.37250 1.38358 1.44992 1.48630 1.55733 2.14420 2.30452 2.70116 2.92907 2.96094 3.38542 3.40931 3.69331 3.77673 4.02539 4.05889 4.19052 4.20459 4.25311 4.36768 4.46434 4.51065 4.61696 4.76504 4.81065 4.88359 5.05207 5.14690 5.22664 5.44161 5.44697 5.55923 5.59731 5.65028 5.66021 5.71308 5.84707 5.88900 6.12273 6.51172 6.64889 6.75814 7.15481 7.32586 8.68848 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.003497 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.075541 B = 8004.485514 C = 9159.698661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.032 3.968 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.270 3.730 10 N -0.326 5.326 11 N -0.321 5.321 12 C 0.087 3.913 13 C -0.310 4.310 14 C 0.620 3.380 15 O -0.527 6.527 16 N -0.492 5.492 17 N -0.091 5.091 18 C -0.033 4.033 19 C -0.044 4.044 20 N -0.281 5.281 21 N -0.122 5.122 22 C 0.207 3.793 23 C -0.077 4.077 24 C -0.102 4.102 25 C -0.141 4.141 26 C -0.095 4.095 27 C -0.132 4.132 28 C -0.051 4.051 29 H 0.274 0.726 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.236 0.764 33 H 0.452 0.548 34 H 0.221 0.779 35 H 0.235 0.765 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.275 -11.189 9.353 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.170 4.170 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.073 0.927 9 C 0.152 3.848 10 N -0.101 5.101 11 N -0.140 5.140 12 C -0.100 4.100 13 C -0.328 4.328 14 C 0.411 3.589 15 O -0.402 6.402 16 N -0.247 5.247 17 N 0.033 4.967 18 C -0.185 4.185 19 C -0.203 4.203 20 N -0.148 5.148 21 N -0.102 5.102 22 C 0.070 3.930 23 C -0.079 4.079 24 C -0.121 4.121 25 C -0.159 4.159 26 C -0.113 4.113 27 C -0.150 4.150 28 C -0.070 4.070 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.252 0.748 33 H 0.299 0.701 34 H 0.237 0.763 35 H 0.251 0.749 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.173 0.827 39 H 0.173 0.827 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.977 -10.945 7.821 14.720 hybrid contribution 0.035 1.327 0.359 1.375 sum 6.012 -9.618 8.180 13.985 Atomic orbital electron populations 1.69985 1.07286 1.29021 1.48623 1.25614 0.95628 1.02289 0.93511 0.85544 0.78485 0.78214 0.79218 1.19945 1.20064 1.18823 1.21211 0.93085 0.90254 1.54087 0.92662 1.19430 0.86111 0.80756 0.98492 1.49440 1.32737 1.25544 1.02402 1.77164 1.15760 1.11758 1.09345 1.24609 0.96277 0.96073 0.93054 1.19210 1.12977 1.07052 0.93545 1.17227 0.76802 0.77515 0.87350 1.90731 1.65146 1.70410 1.13877 1.45161 1.42498 1.29255 1.07757 1.46144 1.26657 1.19550 1.04394 1.24695 1.06091 1.05102 0.82624 1.24249 0.99215 0.96592 1.00221 1.75140 1.20567 1.21503 0.97595 1.78503 1.07230 1.01216 1.23281 1.20162 0.92710 0.91286 0.88857 1.18083 1.06329 0.94552 0.88936 1.21777 0.97119 0.95548 0.97673 1.21268 1.01198 1.00754 0.92656 1.21633 0.96759 0.92425 1.00468 1.21343 1.00898 0.97325 0.95415 1.21185 0.94802 0.97971 0.93041 0.91651 0.94842 0.93632 0.74810 0.70105 0.76268 0.74888 0.86221 0.84870 0.82710 0.82738 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.67 13.29 21.45 0.28 -48.39 16 2 C 0.03 1.63 5.46 84.66 0.46 2.09 16 3 Si 0.96 40.34 29.54 68.60 2.03 42.37 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.55 -28.01 7.23 25.60 0.19 -27.83 16 8 H 0.06 2.89 7.81 -2.91 -0.02 2.87 16 9 C 0.27 13.14 5.42 85.63 0.46 13.60 16 10 N -0.33 -13.83 3.59 -338.02 -1.21 -15.04 16 11 N -0.32 -12.32 12.48 -56.40 -0.70 -13.02 16 12 C 0.09 2.41 11.48 85.60 0.98 3.40 16 13 C -0.31 -9.42 6.13 -19.95 -0.12 -9.54 16 14 C 0.62 16.30 7.76 86.59 0.67 16.97 16 15 O -0.53 -15.09 10.07 -4.17 -0.04 -15.13 16 16 N -0.49 -10.58 6.62 -176.05 -1.17 -11.75 16 17 N -0.09 -2.23 4.54 -57.36 -0.26 -2.49 16 18 C -0.03 -0.73 10.50 83.49 0.88 0.15 16 19 C -0.04 -0.86 12.05 83.73 1.01 0.15 16 20 N -0.28 -7.32 12.41 -58.26 -0.72 -8.04 16 21 N -0.12 -3.27 13.34 37.02 0.49 -2.78 16 22 C 0.21 7.73 6.50 41.43 0.27 8.00 16 23 C -0.08 -2.76 5.07 -20.10 -0.10 -2.86 16 24 C -0.10 -3.82 8.64 22.53 0.19 -3.62 16 25 C -0.14 -4.28 10.03 22.23 0.22 -4.05 16 26 C -0.09 -2.29 10.04 22.33 0.22 -2.07 16 27 C -0.13 -3.20 10.03 22.23 0.22 -2.98 16 28 C -0.05 -1.51 7.54 22.53 0.17 -1.34 16 29 H 0.27 13.81 8.31 -92.71 -0.77 13.03 16 30 H 0.03 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.05 2.31 7.32 -2.39 -0.02 2.29 16 32 H 0.24 3.62 7.49 -2.91 -0.02 3.60 16 33 H 0.45 6.96 7.77 -213.32 -1.66 5.30 16 34 H 0.22 4.59 5.85 -2.91 -0.02 4.57 16 35 H 0.23 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.12 5.19 5.56 -2.91 -0.02 5.17 16 37 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.13 3.60 6.77 -2.91 -0.02 3.58 16 Total: -1.00 -65.97 348.35 3.89 -62.08 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -0.54 Total: 22.13 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.73 Total: -9.94 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -3.29 Total: -101.50 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.04 Total: -15.13 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -65.97 3.89 -62.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298236813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 257.545 kcal (2) G-P(sol) polarization free energy of solvation -65.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds