Wall clock time and date at job start Tue Mar 31 2020 20:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86796 * 119.99633 * 2 1 4 4 H 1.48501 * 109.47349 * 270.00300 * 3 2 1 5 5 H 1.48495 * 109.47429 * 30.00184 * 3 2 1 6 6 H 1.48503 * 109.47347 * 150.00516 * 3 2 1 7 7 C 1.38793 * 120.00195 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00011 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99950 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46929 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00225 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99763 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99751 * 180.02562 * 13 11 10 15 15 H 1.09005 * 112.85101 * 23.80595 * 14 13 11 16 16 C 1.53775 * 113.61363 * 155.00367 * 14 13 11 17 17 C 1.53778 * 87.08494 * 89.20087 * 16 14 13 18 18 H 1.08999 * 113.61068 * 270.80319 * 17 16 14 19 19 N 1.46896 * 113.62067 * 139.97936 * 17 16 14 20 20 C 1.46899 * 111.00128 * 154.99977 * 19 17 16 21 21 C 1.50702 * 109.47064 * 180.02562 * 20 19 17 22 22 C 1.38270 * 119.98561 * 270.28073 * 21 20 19 23 23 C 1.38224 * 120.05223 * 180.32259 * 22 21 20 24 24 C 1.38220 * 120.02601 * 359.67397 * 23 22 21 25 25 C 1.38447 * 119.97159 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.02523 * 179.97438 * 25 24 23 27 27 C 1.38172 * 119.98969 * 89.99477 * 21 20 19 28 28 C 1.53781 * 87.07966 * 25.43076 * 17 16 14 29 29 H 0.96997 * 120.00145 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46850 * 60.00148 * 10 9 7 31 31 H 1.08999 * 109.47037 * 299.99775 * 10 9 7 32 32 H 0.96995 * 119.99833 * 0.02562 * 13 11 10 33 33 H 1.09001 * 113.61719 * 334.64544 * 16 14 13 34 34 H 1.09007 * 113.61620 * 203.74967 * 16 14 13 35 35 H 1.00899 * 111.00296 * 278.96157 * 19 17 16 36 36 H 1.08991 * 109.47084 * 60.00750 * 20 19 17 37 37 H 1.09001 * 109.46788 * 299.99617 * 20 19 17 38 38 H 1.08005 * 119.97405 * 0.02562 * 22 21 20 39 39 H 1.07994 * 119.98833 * 179.69678 * 23 22 21 40 40 H 1.07998 * 120.01498 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.01574 * 359.97438 * 27 21 20 42 42 H 1.09003 * 113.61505 * 89.11668 * 28 17 16 43 43 H 1.09004 * 113.61684 * 220.02025 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4403 0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5161 -3.8913 -0.0005 11 6 1.9876 -5.3027 0.0001 12 8 0.7913 -5.5023 0.0000 13 7 2.8445 -6.3430 -0.0003 14 6 2.3308 -7.7150 -0.0003 15 1 1.3215 -7.7891 -0.4054 16 6 3.3105 -8.7396 -0.5961 17 6 3.8830 -8.8995 0.8221 18 1 4.6911 -8.2037 1.0477 19 7 4.2118 -10.2880 1.1710 20 6 5.2489 -10.3383 2.2102 21 6 5.5595 -11.7755 2.5407 22 6 4.8506 -12.4248 3.5346 23 6 5.1389 -13.7408 3.8435 24 6 6.1318 -14.4115 3.1544 25 6 6.8380 -13.7643 2.1548 26 9 7.8090 -14.4186 1.4809 27 6 6.5485 -12.4456 1.8465 28 6 2.5103 -8.4420 1.3429 29 1 -0.4850 0.8400 0.0004 30 1 3.1246 -3.7312 0.8895 31 1 3.1246 -3.7313 -0.8905 32 1 3.8012 -6.1833 -0.0006 33 1 4.0161 -8.3076 -1.3058 34 1 2.8249 -9.6390 -0.9749 35 1 3.3872 -10.7937 1.4583 36 1 4.8917 -9.8285 3.1049 37 1 6.1511 -9.8463 1.8471 38 1 4.0742 -11.9017 4.0733 39 1 4.5879 -14.2454 4.6232 40 1 6.3566 -15.4399 3.3956 41 1 7.0987 -11.9399 1.0668 42 1 1.8059 -9.2599 1.4943 43 1 2.5699 -7.7696 2.1988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317070726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:37 Heat of formation + Delta-G solvation = -61.033421 kcal Electronic energy + Delta-G solvation = -24663.313105 eV Core-core repulsion = 20748.475188 eV Total energy + Delta-G solvation = -3914.837916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.89134 -41.26234 -40.17000 -39.34100 -35.96515 -34.58561 -34.03187 -31.88852 -31.34440 -30.39115 -27.68019 -26.64212 -26.60598 -24.11448 -23.67526 -22.41923 -22.07958 -20.46926 -19.82813 -18.27714 -17.98837 -17.40919 -17.11251 -17.08583 -16.87637 -16.66060 -16.51324 -16.37655 -16.26424 -15.76699 -15.04496 -14.83938 -14.74397 -14.51522 -14.24286 -14.17441 -13.89666 -13.58979 -13.34183 -13.16456 -13.14883 -12.95607 -12.88906 -12.73173 -12.62900 -12.49816 -11.94347 -11.73136 -11.67583 -11.28716 -11.14172 -10.96162 -10.27541 -10.07751 -9.93438 -9.68082 -9.28246 -8.66654 -8.34591 -6.12758 0.17320 0.27004 1.26994 1.42690 1.47280 1.57558 1.59563 2.24904 2.29027 2.58139 2.99660 3.22282 3.31904 3.34745 3.56238 3.67725 3.77405 3.87464 3.94488 4.01143 4.09475 4.16185 4.28648 4.31139 4.36076 4.50837 4.54207 4.62000 4.70859 4.81031 4.90166 4.95738 4.97941 5.07837 5.12635 5.15351 5.19454 5.38228 5.42050 5.53582 5.58740 5.94786 6.07623 6.19924 6.43205 6.51884 7.06814 7.25753 8.74605 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028090 B = 0.001528 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.542681 B =18318.695664 C =18607.499854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.566 6.566 13 N -0.695 5.695 14 C 0.108 3.892 15 H 0.078 0.922 16 C -0.119 4.119 17 C 0.080 3.920 18 H 0.106 0.894 19 N -0.674 5.674 20 C 0.098 3.902 21 C -0.059 4.059 22 C -0.125 4.125 23 C -0.090 4.090 24 C -0.160 4.160 25 C 0.071 3.929 26 F -0.154 7.154 27 C -0.142 4.142 28 C -0.173 4.173 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.416 0.584 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.350 0.650 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.101 0.899 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.664 -28.651 6.918 33.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.444 6.444 13 N -0.348 5.348 14 C 0.002 3.998 15 H 0.096 0.904 16 C -0.158 4.158 17 C -0.030 4.030 18 H 0.124 0.876 19 N -0.305 5.305 20 C -0.031 4.031 21 C -0.059 4.059 22 C -0.144 4.144 23 C -0.108 4.108 24 C -0.179 4.179 25 C 0.052 3.948 26 F -0.132 7.132 27 C -0.162 4.162 28 C -0.213 4.213 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.253 0.747 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.169 0.831 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.163 0.837 39 H 0.175 0.825 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.119 0.881 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.039 -29.009 6.376 32.852 hybrid contribution 1.511 1.441 0.492 2.145 sum 15.550 -27.569 6.868 32.389 Atomic orbital electron populations 1.70184 1.07977 1.28606 1.48002 1.26122 0.95954 1.03308 0.93726 0.84954 0.78205 0.76034 0.78788 1.19334 1.20328 1.18174 1.23214 0.95381 0.92014 1.58882 0.89856 1.85589 1.10594 0.99252 1.97057 1.23377 1.03550 0.94314 1.06856 1.20078 0.86252 0.86670 0.74774 1.90691 1.17502 1.86045 1.50144 1.45423 1.09992 1.04325 1.75058 1.21808 0.99009 0.80539 0.98483 0.90392 1.23378 0.97387 0.97902 0.97157 1.23018 0.95056 0.89372 0.95542 0.87587 1.60458 1.14211 1.12899 1.42908 1.20947 0.96537 0.91455 0.94117 1.19736 0.94842 0.96208 0.95142 1.21448 1.00039 0.95242 0.97623 1.21321 0.96001 0.94414 0.99074 1.21432 0.97938 1.01956 0.96594 1.18028 0.89893 0.91854 0.95024 1.91470 1.61152 1.81305 1.79314 1.21137 1.00346 0.93011 1.01672 1.24140 0.99324 1.00749 0.97134 0.91999 0.87150 0.87140 0.74686 0.89992 0.87770 0.83065 0.92813 0.89596 0.83688 0.82495 0.83578 0.84618 0.88069 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.79 13.22 21.65 0.29 -55.51 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.55 -31.02 9.50 67.95 0.65 -30.38 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.54 19.26 7.85 87.66 0.69 19.95 16 12 O -0.57 -25.96 15.46 -3.05 -0.05 -26.00 16 13 N -0.69 -16.45 5.27 -440.03 -2.32 -18.77 16 14 C 0.11 2.23 4.32 45.52 0.20 2.43 16 15 H 0.08 2.07 7.46 -2.38 -0.02 2.06 16 16 C -0.12 -1.67 7.63 31.12 0.24 -1.43 16 17 C 0.08 0.96 4.06 45.44 0.18 1.14 16 18 H 0.11 1.13 7.87 -2.39 -0.02 1.11 16 19 N -0.67 -7.29 6.61 -492.88 -3.26 -10.54 16 20 C 0.10 0.95 5.65 85.56 0.48 1.44 16 21 C -0.06 -0.66 5.39 -19.87 -0.11 -0.77 16 22 C -0.12 -1.13 9.70 22.27 0.22 -0.92 16 23 C -0.09 -0.77 10.04 22.26 0.22 -0.55 16 24 C -0.16 -1.85 10.03 22.32 0.22 -1.63 16 25 C 0.07 1.09 7.30 22.38 0.16 1.26 16 26 F -0.15 -2.82 17.27 44.97 0.78 -2.05 16 27 C -0.14 -1.99 9.68 22.31 0.22 -1.78 16 28 C -0.17 -2.75 7.50 31.12 0.23 -2.52 16 29 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 32 H 0.42 6.93 8.70 -92.71 -0.81 6.12 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.35 3.44 8.19 -89.69 -0.73 2.70 16 36 H 0.05 0.46 8.09 -2.39 -0.02 0.44 16 37 H 0.09 0.82 8.07 -2.39 -0.02 0.81 16 38 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 39 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 40 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.10 1.40 7.82 -2.39 -0.02 1.38 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -76.86 384.83 0.32 -76.54 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -0.50 Total: 17.67 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 4.51 Total: -17.08 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -5.29 Total: -84.82 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.05 Total: -26.00 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -76.86 0.32 -76.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317070726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.506 kcal (2) G-P(sol) polarization free energy of solvation -76.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds