Wall clock time and date at job start Tue Mar 31 2020 20:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48500 * 109.47176 * 270.00128 * 3 2 1 5 5 H 1.48503 * 109.46931 * 30.00102 * 3 2 1 6 6 H 1.48498 * 109.47168 * 149.99830 * 3 2 1 7 7 C 1.38802 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99710 * 359.97438 * 7 2 1 9 9 S 1.76192 * 120.00220 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00017 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47018 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00029 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99872 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99600 * 179.97438 * 13 11 10 15 15 H 1.08995 * 110.64834 * 323.29616 * 14 13 11 16 16 C 1.54594 * 110.72534 * 86.45799 * 14 13 11 17 17 C 1.53994 * 105.14201 * 140.31078 * 16 14 13 18 18 N 1.47900 * 107.05704 * 1.22377 * 17 16 14 19 19 C 1.46897 * 110.99646 * 214.15510 * 18 17 16 20 20 C 1.50702 * 109.47275 * 69.87596 * 19 18 17 21 21 C 1.38263 * 119.98681 * 269.97685 * 20 19 18 22 22 C 1.38230 * 120.04954 * 179.97438 * 21 20 19 23 23 C 1.38221 * 120.02563 * 0.02562 * 22 21 20 24 24 C 1.38436 * 119.97522 * 0.02729 * 23 22 21 25 25 F 1.35093 * 120.02478 * 180.02562 * 24 23 22 26 26 C 1.38175 * 119.98427 * 89.99716 * 20 19 18 27 27 C 1.48534 * 105.82045 * 334.66883 * 18 17 16 28 28 H 0.96998 * 120.00121 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47217 * 60.00206 * 10 9 7 30 30 H 1.09000 * 109.47548 * 299.99810 * 10 9 7 31 31 H 0.97000 * 119.99643 * 359.97438 * 13 11 10 32 32 H 1.09006 * 110.30802 * 21.39418 * 16 14 13 33 33 H 1.08995 * 110.30721 * 259.22915 * 16 14 13 34 34 H 1.09000 * 109.91492 * 241.86980 * 17 16 14 35 35 H 1.08999 * 110.08024 * 120.67330 * 17 16 14 36 36 H 1.09000 * 109.47638 * 309.87233 * 19 18 17 37 37 H 1.09004 * 109.47153 * 189.87585 * 19 18 17 38 38 H 1.08000 * 119.97593 * 359.97438 * 21 20 19 39 39 H 1.07994 * 119.98354 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.01106 * 180.02562 * 23 22 21 41 41 H 1.08001 * 120.01835 * 359.72954 * 26 20 19 42 42 H 1.08998 * 110.66562 * 157.64318 * 27 18 17 43 43 H 1.09002 * 110.66711 * 280.76962 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5732 -3.2324 -0.0008 12 8 6.3441 -2.2962 -0.0014 13 7 6.0459 -4.4946 -0.0011 14 6 7.4909 -4.7355 -0.0016 15 1 8.0043 -3.9921 -0.6112 16 6 8.0456 -4.7376 1.4414 17 6 9.0852 -5.8733 1.4710 18 7 9.1323 -6.4539 0.1116 19 6 9.3874 -7.8996 0.1652 20 6 8.1773 -8.6028 0.7243 21 6 8.0648 -8.8066 2.0872 22 6 6.9553 -9.4510 2.6014 23 6 5.9571 -9.8927 1.7534 24 6 6.0693 -9.6902 0.3885 25 9 5.0941 -10.1211 -0.4412 26 6 7.1811 -9.0439 -0.1255 27 6 7.8074 -6.1693 -0.4965 28 1 -0.4850 0.8400 -0.0004 29 1 3.6434 -3.4317 -0.8907 30 1 3.6441 -3.4314 0.8893 31 1 5.4292 -5.2434 -0.0011 32 1 7.2456 -4.9384 2.1540 33 1 8.5217 -3.7830 1.6650 34 1 8.7827 -6.6349 2.1898 35 1 10.0645 -5.4773 1.7399 36 1 10.2481 -8.0933 0.8053 37 1 9.5910 -8.2701 -0.8395 38 1 8.8444 -8.4621 2.7505 39 1 6.8683 -9.6092 3.6661 40 1 5.0902 -10.3958 2.1554 41 1 7.2672 -8.8810 -1.1896 42 1 7.8697 -6.1958 -1.5843 43 1 7.0590 -6.8749 -0.1357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318235814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:22 Heat of formation + Delta-G solvation = -45.597854 kcal Electronic energy + Delta-G solvation = -26291.663923 eV Core-core repulsion = 22377.495343 eV Total energy + Delta-G solvation = -3914.168580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.26661 -40.72462 -39.37578 -38.04714 -34.70873 -32.69766 -32.43760 -31.19550 -30.32441 -29.52539 -28.11203 -25.83864 -25.56498 -23.29773 -22.52230 -21.39663 -21.07101 -20.16853 -17.91345 -17.72741 -17.04176 -16.84008 -16.66430 -16.45515 -15.94972 -15.80496 -15.06122 -14.98825 -14.83755 -14.58641 -14.44264 -14.05145 -13.82321 -13.67083 -13.28449 -13.15778 -12.79850 -12.61201 -12.43166 -12.34531 -12.12424 -11.78571 -11.73438 -11.64945 -11.53464 -11.26467 -11.00904 -10.86561 -10.60221 -9.86059 -9.55882 -9.42869 -9.17413 -9.03442 -8.97905 -8.85952 -8.50466 -6.92014 -6.29050 -4.00824 0.63359 0.69075 2.72870 2.94967 3.03853 3.24014 3.33417 3.50422 3.56824 3.74144 3.87081 4.15844 4.22481 4.28446 4.33187 4.51166 4.53923 4.66491 4.73524 4.77944 4.88296 4.97405 4.98948 5.10014 5.14404 5.21931 5.27867 5.37232 5.39989 5.53859 5.58105 5.62663 5.66935 5.75107 5.77835 5.88426 5.94190 5.99314 6.01652 6.34932 6.39324 6.52453 6.61379 7.58573 7.94036 8.41565 8.47831 9.17103 10.80232 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002523 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.414574 B =11096.598504 C =12215.593063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.125 4.125 11 C 0.533 3.467 12 O -0.516 6.516 13 N -0.730 5.730 14 C 0.147 3.853 15 H 0.102 0.898 16 C -0.143 4.143 17 C 0.027 3.973 18 N -0.499 5.499 19 C 0.082 3.918 20 C -0.094 4.094 21 C -0.122 4.122 22 C -0.089 4.089 23 C -0.152 4.152 24 C 0.100 3.900 25 F -0.137 7.137 26 C -0.143 4.143 27 C 0.017 3.983 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.398 0.602 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.090 0.910 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.084 -23.217 3.762 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.390 6.390 13 N -0.384 5.384 14 C 0.041 3.959 15 H 0.120 0.880 16 C -0.182 4.182 17 C -0.101 4.101 18 N -0.221 5.221 19 C -0.046 4.046 20 C -0.096 4.096 21 C -0.140 4.140 22 C -0.107 4.107 23 C -0.172 4.172 24 C 0.080 3.920 25 F -0.116 7.116 26 C -0.163 4.163 27 C -0.111 4.111 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.232 0.768 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.108 0.892 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.617 -21.304 3.406 29.842 hybrid contribution -2.097 -1.258 0.374 2.474 sum 18.520 -22.562 3.781 29.433 Atomic orbital electron populations 1.69940 1.05928 1.27776 1.48090 1.24717 0.94450 0.98977 0.93173 0.86731 0.81891 0.83255 0.79959 1.19182 1.19946 1.15905 1.22320 0.88299 0.97534 1.58772 0.89413 1.84776 1.09245 0.99976 1.97423 1.23286 0.94007 1.04440 1.05792 1.20281 0.90558 0.82262 0.75016 1.90698 1.58725 1.42109 1.47487 1.45963 1.06815 1.08115 1.77549 1.21710 0.81361 0.96533 0.96310 0.88034 1.22830 0.98479 0.99324 0.97577 1.23031 1.00192 0.96660 0.90175 1.65132 1.29069 1.10302 1.17607 1.21451 0.94104 0.86791 1.02242 1.20466 0.97503 0.97855 0.93736 1.21192 0.98786 0.99447 0.94624 1.21058 0.92971 0.96579 1.00057 1.21230 1.01179 1.03038 0.91704 1.17731 0.87157 0.98953 0.88124 1.91530 1.60890 1.87621 1.71560 1.21106 0.93668 1.00340 1.01140 1.23691 0.90836 0.95831 1.00763 0.91934 0.88489 0.88539 0.76786 0.90952 0.90139 0.92706 0.89896 0.89175 0.89091 0.85237 0.84849 0.84624 0.84576 0.89180 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.69 13.97 55.49 0.78 -25.92 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.85 27.74 -169.99 -4.71 17.14 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 11 C 0.53 9.38 7.84 -10.98 -0.09 9.30 16 12 O -0.52 -11.01 15.59 5.56 0.09 -10.92 16 13 N -0.73 -9.30 5.14 -52.01 -0.27 -9.56 16 14 C 0.15 1.67 3.35 -66.07 -0.22 1.45 16 15 H 0.10 1.38 7.69 -51.93 -0.40 0.98 16 16 C -0.14 -1.49 6.67 -25.37 -0.17 -1.66 16 17 C 0.03 0.22 6.46 -2.75 -0.02 0.20 16 18 N -0.50 -3.99 5.54 -231.89 -1.28 -5.27 16 19 C 0.08 0.50 5.69 -4.98 -0.03 0.47 16 20 C -0.09 -0.62 3.96 -104.63 -0.41 -1.03 16 21 C -0.12 -0.74 8.19 -39.57 -0.32 -1.07 16 22 C -0.09 -0.54 10.04 -39.59 -0.40 -0.94 16 23 C -0.15 -1.11 10.03 -39.51 -0.40 -1.50 16 24 C 0.10 0.85 7.30 -39.42 -0.29 0.56 16 25 F -0.14 -1.37 17.27 2.25 0.04 -1.33 16 26 C -0.14 -1.06 7.47 -39.51 -0.30 -1.36 16 27 C 0.02 0.15 5.66 -1.90 -0.01 0.14 16 28 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 30 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 31 H 0.40 4.11 8.53 -40.82 -0.35 3.77 16 32 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.38 4.86 -51.93 -0.25 0.13 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.44 8.03 -51.93 -0.42 0.03 16 37 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 38 H 0.13 0.59 7.17 -52.49 -0.38 0.22 16 39 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 40 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.14 0.89 8.05 -52.49 -0.42 0.47 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.54 4.72 -51.93 -0.25 0.30 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -33.94 367.44 -9.87 -43.81 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.83 Total: 1.79 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.21 Total: -9.71 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: -0.78 Total: -40.75 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.94 -9.87 -43.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318235814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.789 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds