Wall clock time and date at job start Tue Mar 31 2020 20:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48500 * 109.47176 * 270.00128 * 3 2 1 5 5 H 1.48503 * 109.46931 * 30.00102 * 3 2 1 6 6 H 1.48498 * 109.47168 * 149.99830 * 3 2 1 7 7 C 1.38802 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99710 * 359.97438 * 7 2 1 9 9 S 1.76192 * 120.00220 * 179.97438 * 7 2 1 10 10 C 1.80994 * 100.00017 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.47018 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00029 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99872 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99600 * 179.97438 * 13 11 10 15 15 H 1.08995 * 110.64834 * 323.29616 * 14 13 11 16 16 C 1.54594 * 110.72534 * 86.45799 * 14 13 11 17 17 C 1.53994 * 105.14201 * 140.31078 * 16 14 13 18 18 N 1.47900 * 107.05704 * 1.22377 * 17 16 14 19 19 C 1.46897 * 110.99646 * 214.15510 * 18 17 16 20 20 C 1.50702 * 109.47275 * 69.87596 * 19 18 17 21 21 C 1.38263 * 119.98681 * 269.97685 * 20 19 18 22 22 C 1.38230 * 120.04954 * 179.97438 * 21 20 19 23 23 C 1.38221 * 120.02563 * 0.02562 * 22 21 20 24 24 C 1.38436 * 119.97522 * 0.02729 * 23 22 21 25 25 F 1.35093 * 120.02478 * 180.02562 * 24 23 22 26 26 C 1.38175 * 119.98427 * 89.99716 * 20 19 18 27 27 C 1.48534 * 105.82045 * 334.66883 * 18 17 16 28 28 H 0.96998 * 120.00121 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47217 * 60.00206 * 10 9 7 30 30 H 1.09000 * 109.47548 * 299.99810 * 10 9 7 31 31 H 0.97000 * 119.99643 * 359.97438 * 13 11 10 32 32 H 1.09006 * 110.30802 * 21.39418 * 16 14 13 33 33 H 1.08995 * 110.30721 * 259.22915 * 16 14 13 34 34 H 1.09000 * 109.91492 * 241.86980 * 17 16 14 35 35 H 1.08999 * 110.08024 * 120.67330 * 17 16 14 36 36 H 1.09000 * 109.47638 * 309.87233 * 19 18 17 37 37 H 1.09004 * 109.47153 * 189.87585 * 19 18 17 38 38 H 1.08000 * 119.97593 * 359.97438 * 21 20 19 39 39 H 1.07994 * 119.98354 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.01106 * 180.02562 * 23 22 21 41 41 H 1.08001 * 120.01835 * 359.72954 * 26 20 19 42 42 H 1.08998 * 110.66562 * 157.64318 * 27 18 17 43 43 H 1.09002 * 110.66711 * 280.76962 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7723 -1.2020 -0.0012 10 6 4.0867 -2.9844 -0.0009 11 6 5.5732 -3.2324 -0.0008 12 8 6.3441 -2.2962 -0.0014 13 7 6.0459 -4.4946 -0.0011 14 6 7.4909 -4.7355 -0.0016 15 1 8.0043 -3.9921 -0.6112 16 6 8.0456 -4.7376 1.4414 17 6 9.0852 -5.8733 1.4710 18 7 9.1323 -6.4539 0.1116 19 6 9.3874 -7.8996 0.1652 20 6 8.1773 -8.6028 0.7243 21 6 8.0648 -8.8066 2.0872 22 6 6.9553 -9.4510 2.6014 23 6 5.9571 -9.8927 1.7534 24 6 6.0693 -9.6902 0.3885 25 9 5.0941 -10.1211 -0.4412 26 6 7.1811 -9.0439 -0.1255 27 6 7.8074 -6.1693 -0.4965 28 1 -0.4850 0.8400 -0.0004 29 1 3.6434 -3.4317 -0.8907 30 1 3.6441 -3.4314 0.8893 31 1 5.4292 -5.2434 -0.0011 32 1 7.2456 -4.9384 2.1540 33 1 8.5217 -3.7830 1.6650 34 1 8.7827 -6.6349 2.1898 35 1 10.0645 -5.4773 1.7399 36 1 10.2481 -8.0933 0.8053 37 1 9.5910 -8.2701 -0.8395 38 1 8.8444 -8.4621 2.7505 39 1 6.8683 -9.6092 3.6661 40 1 5.0902 -10.3958 2.1554 41 1 7.2672 -8.8810 -1.1896 42 1 7.8697 -6.1958 -1.5843 43 1 7.0590 -6.8749 -0.1357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318235814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:21 Heat of formation + Delta-G solvation = -68.867019 kcal Electronic energy + Delta-G solvation = -26292.672950 eV Core-core repulsion = 22377.495343 eV Total energy + Delta-G solvation = -3915.177607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.92493 -41.44984 -40.48034 -38.85367 -35.73502 -34.68431 -33.51147 -31.80964 -31.25702 -30.45505 -29.06386 -27.86239 -26.42646 -23.82741 -23.14689 -22.46111 -21.77654 -21.21844 -19.91042 -18.30218 -18.06594 -17.87067 -17.37322 -17.16102 -17.08637 -16.73116 -16.63815 -16.28990 -16.09939 -15.43416 -15.28476 -15.02272 -14.88414 -14.66258 -14.49125 -14.37462 -13.94410 -13.75561 -13.35949 -13.11798 -13.01496 -12.95949 -12.82886 -12.71900 -12.62620 -12.40511 -12.26295 -12.10234 -11.87171 -11.66260 -11.18169 -11.04249 -10.55562 -10.18235 -9.94465 -9.71468 -9.45620 -9.01041 -8.52738 -6.23747 0.11824 0.18863 0.96963 1.30994 1.45657 1.52601 1.54324 2.13294 2.24488 2.54734 2.68998 2.85531 3.09808 3.25158 3.49430 3.63416 3.72010 3.83569 3.87776 4.04210 4.08813 4.18452 4.20571 4.28015 4.29469 4.35609 4.43991 4.50527 4.67387 4.73219 4.84257 4.93888 4.97378 5.01582 5.06525 5.12603 5.15654 5.29829 5.37400 5.46822 5.69461 5.81418 5.89555 5.95378 6.10113 6.40687 6.92326 7.15024 8.59818 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002523 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.414574 B =11096.598504 C =12215.593063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.530 4.530 8 H 0.061 0.939 9 S -0.172 6.172 10 C -0.113 4.113 11 C 0.539 3.461 12 O -0.557 6.557 13 N -0.706 5.706 14 C 0.141 3.859 15 H 0.079 0.921 16 C -0.141 4.141 17 C 0.034 3.966 18 N -0.505 5.505 19 C 0.084 3.916 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.090 4.090 23 C -0.161 4.161 24 C 0.073 3.927 25 F -0.153 7.153 26 C -0.148 4.148 27 C 0.028 3.972 28 H 0.277 0.723 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.413 0.587 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.094 0.906 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.104 -24.390 4.552 32.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.160 1.160 7 C -0.678 4.678 8 H 0.079 0.921 9 S 0.055 5.945 10 C -0.263 4.263 11 C 0.324 3.676 12 O -0.435 6.435 13 N -0.360 5.360 14 C 0.036 3.964 15 H 0.097 0.903 16 C -0.181 4.181 17 C -0.094 4.094 18 N -0.227 5.227 19 C -0.044 4.044 20 C -0.097 4.097 21 C -0.139 4.139 22 C -0.108 4.108 23 C -0.180 4.180 24 C 0.054 3.946 25 F -0.132 7.132 26 C -0.167 4.167 27 C -0.100 4.100 28 H 0.087 0.913 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.250 0.750 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.168 0.832 39 H 0.173 0.827 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.112 0.888 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 22.637 -22.538 4.199 32.219 hybrid contribution -2.685 -1.078 0.146 2.897 sum 19.952 -23.616 4.345 31.220 Atomic orbital electron populations 1.70018 1.07343 1.29069 1.49135 1.25578 0.95278 1.02308 0.92843 0.85859 0.80692 0.79516 0.80260 1.18667 1.18281 1.15983 1.22466 0.90318 0.96673 1.58315 0.92071 1.84683 1.06326 1.05922 1.97578 1.23277 0.95904 0.99813 1.07350 1.19922 0.89324 0.83305 0.75027 1.90689 1.59219 1.43666 1.49928 1.45728 1.08054 1.06835 1.75354 1.21829 0.79760 0.97777 0.97079 0.90277 1.22778 0.99044 0.99758 0.96494 1.23003 0.99726 0.96027 0.90620 1.65149 1.28242 1.11794 1.17549 1.21537 0.94353 0.85253 1.03207 1.20550 0.97339 0.97886 0.93972 1.21490 0.99095 0.98663 0.94690 1.21350 0.92484 0.95917 1.01043 1.21442 1.01939 1.03149 0.91460 1.18028 0.87550 1.00353 0.88625 1.91486 1.61602 1.88018 1.72079 1.21215 0.93589 1.00295 1.01617 1.23585 0.91615 0.93729 1.01062 0.91331 0.86972 0.86968 0.75023 0.91193 0.91781 0.91113 0.89072 0.87402 0.88377 0.83228 0.82720 0.83977 0.84196 0.88770 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.20 13.97 21.65 0.30 -55.90 16 2 C 0.05 2.67 5.50 84.86 0.47 3.14 16 3 Si 0.91 45.16 27.74 68.60 1.90 47.07 16 4 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 7 C -0.53 -31.05 10.04 67.96 0.68 -30.37 16 8 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 9 S -0.17 -8.70 18.55 -56.49 -1.05 -9.75 16 10 C -0.11 -4.26 6.16 71.24 0.44 -3.82 16 11 C 0.54 18.50 7.84 87.66 0.69 19.19 16 12 O -0.56 -23.72 15.59 -3.01 -0.05 -23.76 16 13 N -0.71 -16.94 5.14 -436.84 -2.25 -19.19 16 14 C 0.14 3.04 3.35 46.20 0.15 3.19 16 15 H 0.08 2.12 7.69 -2.39 -0.02 2.10 16 16 C -0.14 -2.75 6.67 31.47 0.21 -2.54 16 17 C 0.03 0.45 6.46 86.45 0.56 1.00 16 18 N -0.51 -6.70 5.54 -887.56 -4.91 -11.61 16 19 C 0.08 0.75 5.69 85.56 0.49 1.23 16 20 C -0.10 -0.99 3.96 -19.87 -0.08 -1.07 16 21 C -0.12 -1.08 8.19 22.27 0.18 -0.89 16 22 C -0.09 -0.86 10.04 22.26 0.22 -0.64 16 23 C -0.16 -2.10 10.03 22.31 0.22 -1.88 16 24 C 0.07 1.18 7.30 22.38 0.16 1.34 16 25 F -0.15 -3.04 17.27 44.97 0.78 -2.26 16 26 C -0.15 -1.94 7.47 22.31 0.17 -1.77 16 27 C 0.03 0.43 5.66 86.65 0.49 0.92 16 28 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 30 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 31 H 0.41 7.64 8.53 -92.71 -0.79 6.85 16 32 H 0.07 1.39 8.05 -2.38 -0.02 1.37 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 0.72 4.86 -2.39 -0.01 0.70 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 0.63 8.03 -2.39 -0.02 0.61 16 37 H 0.10 0.77 8.09 -2.38 -0.02 0.75 16 38 H 0.15 0.72 7.17 -2.91 -0.02 0.70 16 39 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 40 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 41 H 0.14 1.63 8.05 -2.91 -0.02 1.61 16 42 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.02 4.72 -2.39 -0.01 1.00 16 Total: -1.00 -74.14 367.44 0.00 -74.14 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.21 Total: 14.22 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 5.06 Total: -12.95 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -6.86 Total: -86.70 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.78 Total: -2.26 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.07 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.05 Total: -9.75 kcal Total: -74.14 0.00 -74.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318235814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.273 kcal (2) G-P(sol) polarization free energy of solvation -74.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds