Wall clock time and date at job start Tue Mar 31 2020 20:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86804 * 120.00024 * 2 1 4 4 H 1.48503 * 109.46767 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47015 * 300.00255 * 3 2 1 6 6 H 1.48497 * 109.46876 * 60.00373 * 3 2 1 7 7 C 1.38653 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00093 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99729 * 174.60322 * 9 7 2 11 11 C 1.38964 * 120.02791 * 173.82089 * 10 9 7 12 12 C 1.38131 * 120.08127 * 179.71687 * 11 10 9 13 13 C 1.38190 * 120.14542 * 0.56072 * 12 11 10 14 14 C 1.38982 * 120.05785 * 359.71705 * 13 12 11 15 15 N 1.39726 * 120.04033 * 180.02562 * 14 13 12 16 16 C 1.34769 * 120.00192 * 326.28075 * 15 14 13 17 17 O 1.21383 * 120.00190 * 354.78289 * 16 15 14 18 18 C 1.49349 * 120.00507 * 174.78131 * 16 15 14 19 19 O 1.21363 * 119.99753 * 0.02562 * 18 16 15 20 20 N 1.34779 * 120.00444 * 179.97438 * 18 16 15 21 21 C 1.46497 * 120.00117 * 180.02562 * 20 18 16 22 22 C 1.52997 * 109.47225 * 179.97438 * 21 20 18 23 23 O 1.42904 * 109.46935 * 64.99918 * 22 21 20 24 24 C 1.42897 * 113.99659 * 180.02562 * 23 22 21 25 25 C 1.53006 * 109.47087 * 180.02562 * 24 23 22 26 26 O 1.42902 * 109.47248 * 64.99555 * 25 24 23 27 27 C 1.38718 * 120.03271 * 354.09280 * 10 9 7 28 28 H 0.97004 * 119.99970 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.95908 * 359.97438 * 11 10 9 30 30 H 1.07995 * 119.93113 * 180.27653 * 12 11 10 31 31 H 1.07997 * 119.97207 * 179.74058 * 13 12 11 32 32 H 0.97004 * 119.99804 * 146.27593 * 15 14 13 33 33 H 0.96998 * 119.99490 * 0.02562 * 20 18 16 34 34 H 1.09001 * 109.47033 * 300.00064 * 21 20 18 35 35 H 1.08997 * 109.47281 * 59.99675 * 21 20 18 36 36 H 1.08999 * 109.47209 * 184.99844 * 22 21 20 37 37 H 1.08998 * 109.46870 * 305.00161 * 22 21 20 38 38 H 1.08999 * 109.47341 * 299.99769 * 24 23 22 39 39 H 1.09001 * 109.47498 * 60.00246 * 24 23 22 40 40 H 1.08997 * 109.47094 * 185.00546 * 25 24 23 41 41 H 1.09009 * 109.46407 * 304.99614 * 25 24 23 42 42 H 0.96703 * 113.99613 * 180.02562 * 26 25 24 43 43 H 1.07994 * 120.07071 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0693 -3.5043 -0.1148 11 6 1.4552 -4.7449 0.0068 12 6 2.2007 -5.9013 -0.1151 13 6 3.5611 -5.8289 -0.3469 14 6 4.1823 -4.5912 -0.4638 15 7 5.5578 -4.5183 -0.6987 16 6 6.3813 -5.4468 -0.1733 17 8 5.9420 -6.2907 0.5806 18 6 7.8343 -5.4376 -0.5185 19 8 8.2736 -4.5936 -1.2719 20 7 8.6579 -6.3658 0.0074 21 6 10.0832 -6.3563 -0.3309 22 6 10.7871 -7.5052 0.3941 23 8 10.2906 -8.7526 -0.0955 24 6 10.8857 -9.8967 0.5199 25 6 10.2825 -11.1692 -0.0784 26 8 10.6333 -11.2582 -1.4609 27 6 3.4346 -3.4274 -0.3476 28 1 -0.4850 0.8401 0.0004 29 1 0.3930 -4.8050 0.1928 30 1 1.7202 -6.8643 -0.0245 31 1 4.1419 -6.7348 -0.4375 32 1 5.9200 -3.7994 -1.2400 33 1 8.3068 -7.0401 0.6098 34 1 10.2020 -6.4785 -1.4075 35 1 10.5237 -5.4083 -0.0221 36 1 11.8604 -7.4453 0.2137 37 1 10.5938 -7.4321 1.4643 38 1 11.9611 -9.8867 0.3426 39 1 10.6941 -9.8732 1.5927 40 1 10.6702 -12.0391 0.4516 41 1 9.1973 -11.1379 0.0198 42 1 10.2834 -12.0424 -1.9057 43 1 3.9147 -2.4644 -0.4385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318634804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:52 Heat of formation + Delta-G solvation = -156.198278 kcal Electronic energy + Delta-G solvation = -27854.352174 eV Core-core repulsion = 23480.261939 eV Total energy + Delta-G solvation = -4374.090235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.89416 -39.42339 -38.77459 -38.30566 -36.93868 -36.53220 -35.26201 -34.16573 -32.25637 -30.95330 -29.57163 -29.09961 -28.63381 -25.55302 -25.02280 -22.98373 -22.88571 -21.88396 -21.48443 -20.14818 -18.88658 -18.14739 -18.00823 -17.48093 -17.31268 -16.90208 -16.11521 -15.96290 -15.64502 -15.40986 -15.11539 -14.91717 -14.84495 -14.44382 -14.22430 -13.93197 -13.85906 -13.57571 -13.46212 -13.03913 -12.96264 -12.52872 -12.40447 -11.92866 -11.88930 -11.73729 -11.58730 -11.54156 -11.09403 -10.99867 -10.76452 -10.53561 -10.43042 -10.17068 -9.95167 -9.58972 -9.50236 -9.44067 -8.82859 -7.81443 -7.22025 -6.46614 -4.06283 1.22318 2.08704 2.27713 2.39237 3.06203 3.11742 3.13722 3.19101 3.22920 3.60449 3.75707 3.95567 4.33621 4.41063 4.55221 4.58440 4.64167 4.69484 4.85374 4.89094 4.98731 5.08710 5.22739 5.23568 5.25549 5.40366 5.63462 5.92355 5.93548 5.98418 6.15210 6.19658 6.54454 6.63254 6.72860 6.88082 6.98945 7.09932 7.16685 7.23950 7.37634 7.47465 7.68486 7.74454 7.97010 8.04010 8.98966 9.67750 10.71218 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018725 B = 0.002023 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.944299 B =13839.263412 C =15038.671723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.168 3.832 11 C -0.195 4.195 12 C -0.063 4.063 13 C -0.204 4.204 14 C 0.174 3.826 15 N -0.636 5.636 16 C 0.504 3.496 17 O -0.501 6.501 18 C 0.511 3.489 19 O -0.519 6.519 20 N -0.696 5.696 21 C 0.121 3.879 22 C 0.048 3.952 23 O -0.377 6.377 24 C 0.061 3.939 25 C 0.076 3.924 26 O -0.567 6.567 27 C -0.250 4.250 28 H 0.270 0.730 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.419 0.581 33 H 0.416 0.584 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.380 0.620 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.792 -18.491 1.209 28.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.077 6.077 10 C 0.113 3.887 11 C -0.215 4.215 12 C -0.082 4.082 13 C -0.225 4.225 14 C 0.081 3.919 15 N -0.282 5.282 16 C 0.285 3.715 17 O -0.376 6.376 18 C 0.292 3.708 19 O -0.395 6.395 20 N -0.350 5.350 21 C -0.002 4.002 22 C -0.029 4.029 23 O -0.296 6.296 24 C -0.015 4.015 25 C -0.002 4.002 26 O -0.373 6.373 27 C -0.272 4.272 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.256 0.744 33 H 0.253 0.747 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.227 0.773 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 21.592 -17.725 1.215 27.962 hybrid contribution 0.526 0.364 0.145 0.656 sum 22.118 -17.361 1.360 28.151 Atomic orbital electron populations 1.70043 1.05940 1.27605 1.45959 1.25284 0.95846 0.98828 0.96493 0.85657 0.79167 0.80400 0.78277 1.19092 1.20107 1.20132 1.21339 0.91744 0.80811 1.52954 0.89107 1.84023 1.33910 1.11391 1.78409 1.19076 0.89417 0.88197 0.92003 1.20289 1.00224 0.89956 1.10999 1.20518 0.92960 0.97037 0.97648 1.20532 0.94803 0.95629 1.11519 1.17397 0.80436 0.94297 0.99754 1.43142 1.05860 1.28771 1.50394 1.20032 0.87009 0.82841 0.81568 1.90784 1.76855 1.36563 1.33367 1.20087 0.87249 0.82154 0.81345 1.90780 1.77111 1.36880 1.34700 1.45632 1.08530 1.32142 1.48732 1.21511 0.79637 0.97505 1.01558 1.22786 0.98297 0.83907 0.97923 1.88018 1.64522 1.13044 1.64051 1.22568 0.97604 0.85302 0.96057 1.22197 0.99515 0.95603 0.82857 1.86551 1.78510 1.49384 1.22825 1.20844 0.94795 0.97242 1.14271 0.92028 0.86208 0.86420 0.86306 0.74395 0.74740 0.89807 0.89201 0.91144 0.92210 0.92463 0.91645 0.92093 0.92468 0.77275 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.39 -10.86 9.44 30.89 0.29 -10.57 16 8 H 0.09 2.34 5.30 -52.49 -0.28 2.06 16 9 O -0.17 -4.92 9.76 0.03 0.00 -4.92 16 10 C 0.17 4.03 6.64 -39.14 -0.26 3.77 16 11 C -0.19 -4.11 9.99 -39.35 -0.39 -4.51 16 12 C -0.06 -1.16 10.03 -39.64 -0.40 -1.55 16 13 C -0.20 -3.85 8.65 -39.32 -0.34 -4.19 16 14 C 0.17 3.37 6.27 -83.77 -0.52 2.84 16 15 N -0.64 -10.44 5.32 -10.31 -0.05 -10.49 16 16 C 0.50 7.85 7.62 -11.64 -0.09 7.76 16 17 O -0.50 -8.59 14.18 5.47 0.08 -8.51 16 18 C 0.51 6.91 7.89 -11.63 -0.09 6.82 16 19 O -0.52 -7.92 16.48 5.49 0.09 -7.83 16 20 N -0.70 -7.31 5.50 -60.77 -0.33 -7.65 16 21 C 0.12 0.99 6.06 -4.04 -0.02 0.97 16 22 C 0.05 0.30 6.07 37.16 0.23 0.52 16 23 O -0.38 -3.26 10.25 -40.08 -0.41 -3.67 16 24 C 0.06 0.37 6.32 37.16 0.23 0.61 16 25 C 0.08 0.44 7.43 37.16 0.28 0.72 16 26 O -0.57 -4.33 13.63 -40.08 -0.55 -4.87 16 27 C -0.25 -5.45 9.05 -39.19 -0.35 -5.80 16 28 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 30 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.12 2.14 6.44 -52.49 -0.34 1.81 16 32 H 0.42 6.17 8.30 -40.82 -0.34 5.83 16 33 H 0.42 4.08 7.94 -40.82 -0.32 3.76 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 42 H 0.38 1.19 9.12 45.56 0.42 1.61 16 43 H 0.13 2.85 5.71 -52.49 -0.30 2.55 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -35.48 378.97 -5.80 -41.28 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -4.53 Total: 11.42 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.54 Total: -1.63 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.37 Total: -42.45 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.79 Total: -29.80 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.48 -5.80 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318634804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.915 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds