Wall clock time and date at job start Tue Mar 31 2020 20:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35230 * 107.86620 * 179.86985 * 11 10 9 13 13 C 1.40421 * 107.86833 * 0.39274 * 12 11 10 14 14 N 1.40081 * 125.97794 * 179.77848 * 13 12 11 15 15 C 1.34780 * 120.00032 * 359.97438 * 14 13 12 16 16 O 1.21586 * 120.00003 * 359.97438 * 15 14 13 17 17 C 1.47667 * 119.99977 * 180.02562 * 15 14 13 18 18 C 1.41572 * 126.43860 * 179.97438 * 17 15 14 19 19 C 1.35325 * 105.55785 * 179.97438 * 18 17 15 20 20 N 1.35910 * 107.11912 * 0.02562 * 19 18 17 21 21 C 1.39911 * 124.96474 * 180.02562 * 20 19 18 22 22 C 1.39321 * 120.85626 * 359.71963 * 21 20 19 23 23 C 1.38011 * 119.08114 * 179.73444 * 22 21 20 24 24 N 1.31936 * 120.83127 * 0.55093 * 23 22 21 25 25 C 1.31936 * 121.88888 * 359.71888 * 24 23 22 26 26 C 1.38013 * 120.82715 * 0.02562 * 25 24 23 27 27 N 1.28480 * 110.07350 * 359.72200 * 20 19 18 28 28 N 1.31237 * 108.04634 * 359.75856 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.08006 * 126.06772 * 359.97438 * 11 10 9 33 33 H 1.07996 * 126.06657 * 180.12872 * 12 11 10 34 34 H 0.97009 * 120.00254 * 179.97438 * 14 13 12 35 35 H 1.08000 * 127.22174 * 0.03576 * 18 17 15 36 36 H 1.07998 * 126.44079 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.45868 * 359.97438 * 22 21 20 38 38 H 1.08002 * 119.58719 * 180.29114 * 23 22 21 39 39 H 1.07994 * 119.58971 * 180.02562 * 25 24 23 40 40 H 1.08004 * 120.45830 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2630 -5.4436 0.5307 13 6 3.8671 -4.9130 -0.6205 14 7 4.9599 -5.4619 -1.3038 15 6 5.5263 -6.6028 -0.8631 16 8 5.0891 -7.1552 0.1279 17 6 6.6786 -7.1811 -1.5831 18 6 7.3746 -8.3658 -1.2421 19 6 8.3439 -8.4990 -2.1770 20 7 8.2270 -7.4455 -3.0275 21 6 9.0474 -7.2161 -4.1374 22 6 10.0861 -8.0900 -4.4510 23 6 10.8694 -7.8314 -5.5574 24 7 10.6512 -6.7677 -6.3068 25 6 9.6814 -5.9140 -6.0395 26 6 8.8507 -6.1044 -4.9539 27 7 7.2490 -6.6943 -2.6672 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5912 -4.7503 1.7306 33 1 3.5587 -6.3457 1.0457 34 1 5.3089 -5.0210 -2.0942 35 1 7.1735 -9.0255 -0.4110 36 1 9.0734 -9.2933 -2.2361 37 1 10.2733 -8.9600 -3.8389 38 1 11.6738 -8.5061 -5.8108 39 1 9.5356 -5.0555 -6.6782 40 1 8.0584 -5.4020 -4.7409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320795225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:06 Heat of formation + Delta-G solvation = 179.032016 kcal Electronic energy + Delta-G solvation = -26605.635061 eV Core-core repulsion = 22617.975925 eV Total energy + Delta-G solvation = -3987.659136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.43688 -40.78889 -40.52982 -39.12980 -34.93754 -34.92355 -33.68173 -32.27238 -31.27878 -31.11510 -30.42747 -29.40455 -26.63917 -25.43632 -24.50357 -23.43555 -22.68352 -21.73856 -21.25657 -20.34906 -19.51174 -19.20682 -17.45127 -17.19559 -16.73549 -16.64852 -16.62573 -16.40450 -15.58444 -15.27039 -15.02799 -14.53320 -14.38040 -14.30513 -14.10107 -13.97359 -13.78372 -13.57185 -13.14876 -12.46850 -12.40113 -12.28079 -11.86360 -11.43444 -11.30027 -11.16500 -10.82135 -10.51246 -10.28008 -10.19645 -10.16087 -9.89524 -9.81416 -9.79835 -9.21265 -9.00480 -8.58380 -8.23257 -7.55451 -6.58356 -4.32372 0.02448 0.43555 1.34694 1.69351 1.76380 2.60632 2.66418 3.04908 3.18768 3.37981 3.39735 3.57175 3.59983 3.71442 3.78442 3.82156 4.02571 4.25494 4.29823 4.40923 4.46100 4.66572 4.84811 5.01610 5.10791 5.15233 5.15764 5.24284 5.36854 5.44952 5.69416 5.85540 5.89814 6.13250 6.28202 6.37847 6.48436 6.56533 6.74071 7.22539 7.30538 7.31250 7.47775 7.69423 7.81439 8.09989 8.33795 8.51671 8.61222 9.35693 10.79250 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.002236 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.031119 B =12518.208725 C =14291.806711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.316 5.316 11 C 0.052 3.948 12 C -0.284 4.284 13 C 0.258 3.742 14 N -0.615 5.615 15 C 0.610 3.390 16 O -0.504 6.504 17 C 0.013 3.987 18 C -0.159 4.159 19 C -0.014 4.014 20 N -0.241 5.241 21 C 0.186 3.814 22 C -0.185 4.185 23 C 0.125 3.875 24 N -0.487 5.487 25 C 0.126 3.874 26 C -0.165 4.165 27 N -0.254 5.254 28 N -0.298 5.298 29 H 0.267 0.733 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.417 0.583 35 H 0.175 0.825 36 H 0.190 0.810 37 H 0.147 0.853 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.683 -19.572 -8.202 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.097 5.097 11 C -0.098 4.098 12 C -0.315 4.315 13 C 0.005 3.995 14 N -0.262 5.262 15 C 0.394 3.606 16 O -0.375 6.375 17 C -0.150 4.150 18 C -0.186 4.186 19 C -0.152 4.152 20 N -0.024 5.024 21 C 0.087 3.913 22 C -0.208 4.208 23 C -0.032 4.032 24 N -0.197 5.197 25 C -0.031 4.031 26 C -0.186 4.186 27 N -0.087 5.087 28 N -0.129 5.129 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.186 0.814 33 H 0.180 0.820 34 H 0.253 0.747 35 H 0.192 0.808 36 H 0.207 0.793 37 H 0.164 0.836 38 H 0.186 0.814 39 H 0.187 0.813 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 20.494 -16.221 -9.822 27.922 hybrid contribution -0.113 -2.946 1.515 3.315 sum 20.381 -19.168 -8.307 29.186 Atomic orbital electron populations 1.70853 1.06762 1.30423 1.45943 1.25924 0.96320 1.02810 0.93140 0.83421 0.74808 0.74556 0.76858 1.20518 1.21237 1.21123 1.22099 0.95386 0.90418 1.56698 0.91835 1.19780 0.86299 0.82802 0.98053 1.48817 1.23270 1.19509 1.18143 1.22568 1.00428 0.90091 0.96701 1.21535 1.02187 1.06339 1.01464 1.19035 0.91407 0.94367 0.94707 1.42206 1.29551 1.24284 1.30191 1.16632 0.80858 0.79789 0.83369 1.90758 1.61640 1.60474 1.24653 1.21983 0.99816 0.97694 0.95532 1.21904 0.96272 0.98477 1.01994 1.23100 1.03881 0.94969 0.93233 1.42649 1.21907 1.17785 1.20012 1.17927 0.90781 0.96402 0.86223 1.21913 0.96357 1.01232 1.01253 1.22731 0.97170 0.93914 0.89367 1.67739 1.18536 1.03429 1.29956 1.22854 0.89009 0.97356 0.93838 1.22114 1.02897 0.97679 0.95943 1.73579 1.00769 1.19737 1.14612 1.77381 1.03423 1.16069 1.15980 0.92279 0.93540 0.94696 0.81352 0.82027 0.74655 0.80769 0.79301 0.83572 0.81429 0.81283 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.65 55.43 0.76 -25.61 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 25.03 29.90 -169.99 -5.08 19.94 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.61 -17.16 9.24 -34.44 -0.32 -17.48 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.25 6.31 5.57 -5.19 -0.03 6.28 16 10 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 11 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 12 C -0.28 -5.64 9.60 -39.83 -0.38 -6.03 16 13 C 0.26 5.31 8.11 -154.45 -1.25 4.06 16 14 N -0.62 -10.36 5.44 -12.04 -0.07 -10.42 16 15 C 0.61 9.54 7.79 -12.41 -0.10 9.44 16 16 O -0.50 -8.84 14.05 5.29 0.07 -8.77 16 17 C 0.01 0.16 7.13 -82.75 -0.59 -0.43 16 18 C -0.16 -1.53 10.80 -39.35 -0.42 -1.95 16 19 C -0.01 -0.10 10.82 -16.78 -0.18 -0.28 16 20 N -0.24 -2.27 3.51 -10.37 -0.04 -2.31 16 21 C 0.19 1.47 6.70 -83.36 -0.56 0.92 16 22 C -0.19 -0.97 9.50 -39.26 -0.37 -1.34 16 23 C 0.13 0.67 11.17 -17.59 -0.20 0.47 16 24 N -0.49 -3.67 10.36 -13.32 -0.14 -3.80 16 25 C 0.13 0.86 11.18 -17.59 -0.20 0.66 16 26 C -0.16 -1.28 9.67 -39.26 -0.38 -1.66 16 27 N -0.25 -3.01 10.94 33.43 0.37 -2.64 16 28 N -0.30 -7.01 12.42 31.43 0.39 -6.62 16 29 H 0.27 7.60 7.22 -40.82 -0.29 7.31 16 30 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 31 H 0.04 0.92 8.00 -51.93 -0.42 0.51 16 32 H 0.17 2.71 8.06 -52.48 -0.42 2.29 16 33 H 0.16 3.06 5.91 -52.49 -0.31 2.75 16 34 H 0.42 6.26 8.54 -40.82 -0.35 5.92 16 35 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.19 0.55 7.04 -52.49 -0.37 0.18 16 37 H 0.15 0.33 6.78 -52.48 -0.36 -0.03 16 38 H 0.17 0.37 8.06 -52.49 -0.42 -0.05 16 39 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.16 1.22 7.74 -52.48 -0.41 0.81 16 LS Contribution 358.65 15.07 5.40 5.40 Total: -1.00 -35.68 358.65 -7.64 -43.33 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.81 Total: 5.09 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -5.27 Total: -5.95 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 1.04 Total: -59.05 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.07 Total: -8.77 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.68 -7.64 -43.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320795225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.360 kcal (2) G-P(sol) polarization free energy of solvation -35.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds