Wall clock time and date at job start Tue Mar 31 2020 20:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34966 * 125.97782 * 124.71059 * 10 9 7 12 12 C 1.35230 * 107.86620 * 179.86985 * 11 10 9 13 13 C 1.40421 * 107.86833 * 0.39274 * 12 11 10 14 14 N 1.40081 * 125.97794 * 179.77848 * 13 12 11 15 15 C 1.34780 * 120.00032 * 359.97438 * 14 13 12 16 16 O 1.21586 * 120.00003 * 359.97438 * 15 14 13 17 17 C 1.47667 * 119.99977 * 180.02562 * 15 14 13 18 18 C 1.41572 * 126.43860 * 179.97438 * 17 15 14 19 19 C 1.35325 * 105.55785 * 179.97438 * 18 17 15 20 20 N 1.35910 * 107.11912 * 0.02562 * 19 18 17 21 21 C 1.39911 * 124.96474 * 180.02562 * 20 19 18 22 22 C 1.39321 * 120.85626 * 359.71963 * 21 20 19 23 23 C 1.38011 * 119.08114 * 179.73444 * 22 21 20 24 24 N 1.31936 * 120.83127 * 0.55093 * 23 22 21 25 25 C 1.31936 * 121.88888 * 359.71888 * 24 23 22 26 26 C 1.38013 * 120.82715 * 0.02562 * 25 24 23 27 27 N 1.28480 * 110.07350 * 359.72200 * 20 19 18 28 28 N 1.31237 * 108.04634 * 359.75856 * 13 12 11 29 29 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 31 31 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 32 32 H 1.08006 * 126.06772 * 359.97438 * 11 10 9 33 33 H 1.07996 * 126.06657 * 180.12872 * 12 11 10 34 34 H 0.97009 * 120.00254 * 179.97438 * 14 13 12 35 35 H 1.08000 * 127.22174 * 0.03576 * 18 17 15 36 36 H 1.07998 * 126.44079 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.45868 * 359.97438 * 22 21 20 38 38 H 1.08002 * 119.58719 * 180.29114 * 23 22 21 39 39 H 1.07994 * 119.58971 * 180.02562 * 25 24 23 40 40 H 1.08004 * 120.45830 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8836 12 6 3.2630 -5.4436 0.5307 13 6 3.8671 -4.9130 -0.6205 14 7 4.9599 -5.4619 -1.3038 15 6 5.5263 -6.6028 -0.8631 16 8 5.0891 -7.1552 0.1279 17 6 6.6786 -7.1811 -1.5831 18 6 7.3746 -8.3658 -1.2421 19 6 8.3439 -8.4990 -2.1770 20 7 8.2270 -7.4455 -3.0275 21 6 9.0474 -7.2161 -4.1374 22 6 10.0861 -8.0900 -4.4510 23 6 10.8694 -7.8314 -5.5574 24 7 10.6512 -6.7677 -6.3068 25 6 9.6814 -5.9140 -6.0395 26 6 8.8507 -6.1044 -4.9539 27 7 7.2490 -6.6943 -2.6672 28 7 3.2287 -3.8132 -0.9445 29 1 -0.4850 -0.8400 0.0004 30 1 0.6281 -2.5591 0.8866 31 1 0.6207 -2.5548 -0.8933 32 1 1.5912 -4.7503 1.7306 33 1 3.5587 -6.3457 1.0457 34 1 5.3089 -5.0210 -2.0942 35 1 7.1735 -9.0255 -0.4110 36 1 9.0734 -9.2933 -2.2361 37 1 10.2733 -8.9600 -3.8389 38 1 11.6738 -8.5061 -5.8108 39 1 9.5356 -5.0555 -6.6782 40 1 8.0584 -5.4020 -4.7409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320795225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:05 Heat of formation + Delta-G solvation = 155.431372 kcal Electronic energy + Delta-G solvation = -26606.658462 eV Core-core repulsion = 22617.975925 eV Total energy + Delta-G solvation = -3988.682537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.16553 -42.33370 -41.11380 -40.44805 -36.51236 -35.68338 -35.48283 -32.93009 -32.71540 -31.76757 -31.37943 -31.04650 -28.37680 -26.58022 -25.12889 -24.93048 -23.85013 -22.60936 -22.39222 -21.81239 -20.81600 -19.83310 -19.25766 -18.57672 -18.09828 -17.51592 -17.18301 -17.01177 -16.85358 -16.47438 -16.15010 -15.80620 -15.64670 -15.49260 -15.07521 -14.85238 -14.81265 -14.72610 -14.25606 -14.09362 -13.95966 -13.74862 -13.25052 -12.86889 -12.63687 -12.17768 -12.14657 -11.96536 -11.94412 -11.77359 -11.31127 -11.03264 -10.71911 -10.70740 -10.49278 -10.32633 -9.93934 -9.85852 -9.26134 -8.79396 -6.57079 -0.58706 -0.00638 0.35997 0.97418 1.04773 1.17433 1.27315 1.49846 1.56210 1.72988 1.78019 2.19493 2.31306 2.47537 2.70830 2.93161 2.99789 3.44768 3.48094 3.56425 3.80518 3.82169 3.95839 4.01882 4.11174 4.39984 4.41927 4.52949 4.54781 4.62383 4.66501 4.75539 4.75857 4.78692 4.87125 5.00026 5.16770 5.43518 5.53217 5.72708 5.74235 5.89185 6.03719 6.24686 6.39866 6.53320 6.81685 6.85644 6.90571 7.18129 8.57186 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.002236 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.031119 B =12518.208725 C =14291.806711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.019 4.019 3 Si 1.119 2.881 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.276 1.276 7 C -0.622 4.622 8 H 0.044 0.956 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.059 3.941 12 C -0.288 4.288 13 C 0.265 3.735 14 N -0.616 5.616 15 C 0.613 3.387 16 O -0.526 6.526 17 C -0.016 4.016 18 C -0.171 4.171 19 C 0.009 3.991 20 N -0.238 5.238 21 C 0.159 3.841 22 C -0.167 4.167 23 C 0.124 3.876 24 N -0.508 5.508 25 C 0.120 3.880 26 C -0.180 4.180 27 N -0.276 5.276 28 N -0.344 5.344 29 H 0.261 0.739 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.207 0.793 33 H 0.174 0.826 34 H 0.423 0.577 35 H 0.189 0.811 36 H 0.242 0.758 37 H 0.185 0.815 38 H 0.203 0.797 39 H 0.184 0.816 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.427 -21.623 -8.269 32.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.940 3.060 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.660 4.660 8 H 0.062 0.938 9 C 0.139 3.861 10 N -0.123 5.123 11 C -0.089 4.089 12 C -0.319 4.319 13 C 0.011 3.989 14 N -0.264 5.264 15 C 0.399 3.601 16 O -0.398 6.398 17 C -0.177 4.177 18 C -0.198 4.198 19 C -0.129 4.129 20 N -0.021 5.021 21 C 0.061 3.939 22 C -0.189 4.189 23 C -0.033 4.033 24 N -0.218 5.218 25 C -0.036 4.036 26 C -0.202 4.202 27 N -0.110 5.110 28 N -0.175 5.175 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.224 0.776 33 H 0.192 0.808 34 H 0.260 0.740 35 H 0.206 0.794 36 H 0.258 0.742 37 H 0.202 0.798 38 H 0.219 0.781 39 H 0.201 0.799 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 23.249 -18.304 -9.898 31.201 hybrid contribution -0.796 -2.487 1.433 2.979 sum 22.453 -20.791 -8.465 31.750 Atomic orbital electron populations 1.70946 1.07384 1.30191 1.47261 1.27267 0.96468 1.06034 0.92089 0.82888 0.74156 0.71186 0.77769 1.19849 1.19637 1.20196 1.22275 0.94622 0.92169 1.56929 0.93802 1.19459 0.86377 0.82692 0.97543 1.48611 1.23858 1.20217 1.19583 1.23231 1.00489 0.88538 0.96625 1.21760 1.02147 1.06694 1.01334 1.19382 0.91454 0.93387 0.94691 1.42369 1.28832 1.24853 1.30347 1.17080 0.81102 0.78824 0.83083 1.90714 1.62564 1.60877 1.25682 1.21649 0.99943 0.99421 0.96679 1.22179 0.96639 0.97712 1.03292 1.23858 1.03364 0.94627 0.91051 1.42874 1.21106 1.17788 1.20334 1.18292 0.91881 0.97516 0.86250 1.22312 0.94340 1.01263 1.01018 1.23371 0.97622 0.93500 0.88799 1.67782 1.18762 1.04354 1.30904 1.23064 0.88830 0.97940 0.93799 1.22145 1.03145 0.98102 0.96775 1.73512 1.01915 1.20895 1.14677 1.77296 1.04769 1.18045 1.17428 0.92933 0.92479 0.96475 0.77641 0.80849 0.73977 0.79414 0.74220 0.79785 0.78056 0.79950 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.28 13.65 21.45 0.29 -53.99 16 2 C -0.02 -1.06 5.46 84.65 0.46 -0.60 16 3 Si 1.12 50.39 29.90 68.60 2.05 52.44 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.62 -35.92 9.24 25.60 0.24 -35.68 16 8 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 9 C 0.26 13.47 5.57 85.64 0.48 13.95 16 10 N -0.34 -16.37 3.67 -351.84 -1.29 -17.66 16 11 C 0.06 2.36 11.43 83.52 0.95 3.31 16 12 C -0.29 -11.47 9.60 22.11 0.21 -11.26 16 13 C 0.27 11.19 8.11 133.35 1.08 12.27 16 14 N -0.62 -21.39 5.44 -310.27 -1.69 -23.08 16 15 C 0.61 19.45 7.79 86.73 0.68 20.13 16 16 O -0.53 -18.49 14.05 -3.99 -0.06 -18.55 16 17 C -0.02 -0.40 7.13 42.46 0.30 -0.10 16 18 C -0.17 -2.94 10.80 22.42 0.24 -2.70 16 19 C 0.01 0.10 10.82 83.39 0.90 1.01 16 20 N -0.24 -4.03 3.51 -186.73 -0.66 -4.68 16 21 C 0.16 2.21 6.70 38.37 0.26 2.47 16 22 C -0.17 -1.10 9.50 22.48 0.21 -0.89 16 23 C 0.12 0.90 11.17 84.62 0.95 1.85 16 24 N -0.51 -6.70 10.36 -196.06 -2.03 -8.73 16 25 C 0.12 1.56 11.18 84.62 0.95 2.50 16 26 C -0.18 -2.75 9.67 22.48 0.22 -2.53 16 27 N -0.28 -6.46 10.94 -48.16 -0.53 -6.98 16 28 N -0.34 -16.78 12.42 -54.48 -0.68 -17.46 16 29 H 0.26 15.18 7.22 -92.71 -0.67 14.51 16 30 H 0.06 2.82 7.94 -2.39 -0.02 2.81 16 31 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 32 H 0.21 6.29 8.06 -2.91 -0.02 6.27 16 33 H 0.17 6.48 5.91 -2.91 -0.02 6.46 16 34 H 0.42 13.39 8.54 -92.70 -0.79 12.60 16 35 H 0.19 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.24 -0.09 7.04 -2.91 -0.02 -0.11 16 37 H 0.18 -0.30 6.78 -2.91 -0.02 -0.32 16 38 H 0.20 -0.03 8.06 -2.91 -0.02 -0.06 16 39 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.14 2.43 7.74 -2.91 -0.02 2.41 16 Total: -1.00 -79.98 358.65 3.97 -76.01 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.42 Total: 18.96 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 8.13 Total: 3.73 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -6.58 Total: -132.58 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.06 Total: -18.55 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -79.98 3.97 -76.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320795225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.438 kcal (2) G-P(sol) polarization free energy of solvation -79.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds