Wall clock time and date at job start Tue Mar 31 2020 20:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00137 * 2 1 4 4 H 1.48502 * 109.47165 * 270.00200 * 3 2 1 5 5 H 1.48502 * 109.46932 * 29.99995 * 3 2 1 6 6 H 1.48498 * 109.47260 * 150.00038 * 3 2 1 7 7 C 1.37871 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00408 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00008 * 180.02562 * 7 2 1 10 10 O 1.42907 * 109.46965 * 179.97438 * 9 7 2 11 11 C 1.42891 * 113.99821 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47126 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.47183 * 65.00462 * 12 11 10 14 14 C 1.34224 * 117.00322 * 180.02562 * 13 12 11 15 15 O 1.20830 * 120.00039 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99994 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47116 * 180.02562 * 16 14 13 18 18 N 1.46500 * 109.47265 * 180.02562 * 17 16 14 19 19 C 1.34744 * 119.99849 * 179.97438 * 18 17 16 20 20 O 1.34274 * 120.00533 * 359.97438 * 19 18 17 21 21 C 1.41526 * 119.99834 * 179.97438 * 19 18 17 22 22 N 1.33542 * 120.01504 * 359.72384 * 21 19 18 23 23 C 1.30907 * 121.63327 * 180.27428 * 22 21 19 24 24 C 1.39500 * 121.49174 * 0.02562 * 23 22 21 25 25 C 1.36513 * 119.85294 * 359.97438 * 24 23 22 26 26 C 1.40985 * 118.47275 * 0.02562 * 25 24 23 27 27 O 1.22426 * 120.71102 * 179.97438 * 26 25 24 28 28 H 0.97005 * 119.99816 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47251 * 60.00033 * 9 7 2 30 30 H 1.09002 * 109.47004 * 299.99276 * 9 7 2 31 31 H 1.09006 * 109.46998 * 60.00100 * 11 10 9 32 32 H 1.09004 * 109.47903 * 299.99999 * 11 10 9 33 33 H 1.08995 * 109.47288 * 305.00020 * 12 11 10 34 34 H 1.09007 * 109.47242 * 185.00218 * 12 11 10 35 35 H 1.09002 * 109.47154 * 60.00299 * 16 14 13 36 36 H 1.09001 * 109.47056 * 299.99606 * 16 14 13 37 37 H 1.09001 * 109.47522 * 59.99443 * 17 16 14 38 38 H 1.09006 * 109.46829 * 300.00214 * 17 16 14 39 39 H 0.96997 * 119.99826 * 0.02562 * 18 17 16 40 40 H 0.96704 * 116.99444 * 359.97438 * 20 19 18 41 41 H 1.07998 * 119.25855 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.07645 * 179.97438 * 24 23 22 43 43 H 1.08005 * 120.76484 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 -0.0001 11 6 5.4123 -2.6542 -0.0001 12 6 5.8068 -4.1324 0.0004 13 8 5.3727 -4.7497 -1.2401 14 6 5.6435 -6.0547 -1.3988 15 8 6.2246 -6.6611 -0.5302 16 6 5.2228 -6.7635 -2.6605 17 6 5.6485 -8.2313 -2.5870 18 7 5.2401 -8.9202 -3.8137 19 6 5.5121 -10.2303 -3.9730 20 8 6.1579 -10.9042 -3.0078 21 6 5.1171 -10.8959 -5.1578 22 7 4.4699 -10.2273 -6.1157 23 6 4.0853 -10.8126 -7.2217 24 6 4.3325 -12.1657 -7.4540 25 6 4.9899 -12.9074 -6.5152 26 6 5.4023 -12.2732 -5.3256 27 8 5.9944 -12.8994 -4.4560 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6808 0.8905 30 1 3.8752 -0.6797 -0.8895 31 1 5.8151 -2.1707 0.8899 32 1 5.8152 -2.1706 -0.8901 33 1 5.3311 -4.6351 0.8424 34 1 6.8897 -4.2195 0.0900 35 1 5.6982 -6.2896 -3.5193 36 1 4.1396 -6.7046 -2.7664 37 1 5.1728 -8.7050 -1.7282 38 1 6.7317 -8.2905 -2.4807 39 1 4.7746 -8.4331 -4.5114 40 1 6.4078 -10.4068 -2.2170 41 1 3.5641 -10.2351 -7.9708 42 1 4.0046 -12.6255 -8.3746 43 1 5.1894 -13.9560 -6.6801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324939636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:57 Heat of formation + Delta-G solvation = -150.675185 kcal Electronic energy + Delta-G solvation = -27289.472791 eV Core-core repulsion = 22915.622056 eV Total energy + Delta-G solvation = -4373.850736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.44428 -40.76648 -39.69654 -37.63878 -37.17747 -36.63789 -36.25233 -33.37235 -32.80745 -31.80225 -30.52499 -29.63065 -27.76403 -26.37186 -24.63960 -22.75575 -22.45272 -22.24704 -21.99462 -21.24555 -19.95448 -18.43684 -17.93822 -17.36430 -17.09555 -16.58935 -16.51985 -16.44749 -16.22005 -15.76526 -15.59546 -15.13395 -14.94389 -14.70159 -14.53226 -14.22391 -14.03814 -13.56029 -13.38106 -13.22945 -13.17003 -12.69915 -12.65017 -12.53828 -12.50805 -12.38857 -11.90305 -11.35544 -11.09932 -11.05840 -10.86031 -10.77616 -10.72742 -10.64211 -9.97890 -9.83029 -9.32826 -9.04905 -8.96587 -8.62883 -7.61441 -6.21933 -4.22160 -0.08017 1.66080 1.68187 1.79749 2.16591 2.29002 2.61552 3.15994 3.23042 3.23889 3.55801 3.95924 4.03396 4.09860 4.23332 4.25231 4.30378 4.51360 4.66211 4.78426 4.81381 4.89697 4.90658 4.97281 5.06107 5.08968 5.15655 5.20217 5.48912 5.55177 5.59734 5.73997 6.03854 6.13093 6.19296 6.30516 6.39235 6.42292 6.68108 6.83918 7.36409 7.45655 7.75107 7.81151 8.09638 8.50992 8.88089 9.36207 10.90867 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.001648 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.524902 B =16986.990343 C =18174.285000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.082 0.918 9 C 0.169 3.831 10 O -0.377 6.377 11 C 0.056 3.944 12 C 0.075 3.925 13 O -0.336 6.336 14 C 0.470 3.530 15 O -0.516 6.516 16 C -0.127 4.127 17 C 0.087 3.913 18 N -0.682 5.682 19 C 0.556 3.444 20 O -0.414 6.414 21 C -0.191 4.191 22 N -0.415 5.415 23 C 0.037 3.963 24 C -0.085 4.085 25 C -0.216 4.216 26 C 0.371 3.629 27 O -0.527 6.527 28 H 0.268 0.732 29 H 0.005 0.995 30 H 0.001 0.999 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.440 0.560 40 H 0.415 0.585 41 H 0.154 0.846 42 H 0.127 0.873 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.222 -17.541 -10.537 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.100 0.900 9 C 0.094 3.906 10 O -0.296 6.296 11 C -0.022 4.022 12 C 0.002 3.998 13 O -0.251 6.251 14 C 0.313 3.687 15 O -0.406 6.406 16 C -0.164 4.164 17 C -0.036 4.036 18 N -0.317 5.317 19 C 0.378 3.622 20 O -0.207 6.207 21 C -0.314 4.314 22 N -0.126 5.126 23 C -0.146 4.146 24 C -0.106 4.106 25 C -0.244 4.244 26 C 0.265 3.735 27 O -0.416 6.416 28 H 0.078 0.922 29 H 0.022 0.978 30 H 0.019 0.981 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.282 0.718 40 H 0.273 0.727 41 H 0.171 0.829 42 H 0.145 0.855 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.389 -17.568 -9.562 24.640 hybrid contribution 0.555 1.030 0.013 1.170 sum 14.944 -16.538 -9.549 24.249 Atomic orbital electron populations 1.69869 1.06065 1.27225 1.49903 1.24771 0.94830 0.98791 0.94535 0.86842 0.80285 0.83724 0.78820 1.19856 1.20680 1.19155 1.20849 0.88111 0.95376 1.51713 0.89960 1.20648 0.96381 0.79046 0.94537 1.87968 1.16506 1.29997 1.95109 1.22412 0.86314 0.92598 1.00847 1.23275 0.99276 0.93307 0.83954 1.86582 1.73127 1.23458 1.41910 1.22958 0.76031 0.81662 0.88065 1.90694 1.39218 1.67111 1.43534 1.21325 1.06266 0.92505 0.96346 1.21756 1.02442 0.92989 0.86423 1.45275 1.56429 1.08116 1.21910 1.20001 0.77173 0.79407 0.85621 1.84785 1.67245 1.40233 1.28426 1.18531 1.22247 0.95023 0.95604 1.66745 1.05971 1.39202 1.00635 1.22177 1.04378 0.92858 0.95166 1.22012 0.94529 0.95228 0.98821 1.22861 1.03578 1.01420 0.96494 1.17378 0.80560 0.87736 0.87797 1.90850 1.39212 1.67631 1.43950 0.92239 0.97782 0.98115 0.91574 0.92929 0.90028 0.90023 0.85975 0.85602 0.88302 0.88463 0.71781 0.72665 0.82855 0.85492 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 20.45 27.47 -169.99 -4.67 15.78 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.52 -14.92 9.99 -34.44 -0.34 -15.27 16 8 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.17 4.03 4.76 36.01 0.17 4.20 16 10 O -0.38 -8.08 10.30 -38.80 -0.40 -8.48 16 11 C 0.06 0.84 6.33 37.16 0.24 1.07 16 12 C 0.08 0.93 5.84 37.16 0.22 1.15 16 13 O -0.34 -4.20 10.19 -42.01 -0.43 -4.63 16 14 C 0.47 4.42 7.96 36.01 0.29 4.71 16 15 O -0.52 -5.72 15.73 -18.75 -0.30 -6.02 16 16 C -0.13 -0.58 5.93 -27.88 -0.17 -0.75 16 17 C 0.09 0.27 4.25 -4.04 -0.02 0.26 16 18 N -0.68 -3.01 5.53 -60.40 -0.33 -3.34 16 19 C 0.56 4.32 7.83 -15.02 -0.12 4.20 16 20 O -0.41 -3.00 11.37 -37.03 -0.42 -3.42 16 21 C -0.19 -2.12 6.61 -84.57 -0.56 -2.68 16 22 N -0.41 -4.13 9.40 -10.77 -0.10 -4.23 16 23 C 0.04 0.32 11.17 -17.48 -0.20 0.12 16 24 C -0.09 -0.73 10.04 -39.73 -0.40 -1.13 16 25 C -0.22 -2.42 10.09 -39.16 -0.40 -2.82 16 26 C 0.37 5.07 6.73 -37.24 -0.25 4.82 16 27 O -0.53 -8.73 15.87 -17.82 -0.28 -9.02 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.00 0.10 7.20 -51.93 -0.37 -0.27 16 30 H 0.00 0.03 7.57 -51.93 -0.39 -0.37 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.06 8.13 -51.93 -0.42 0.63 16 34 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 35 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.28 7.88 -51.93 -0.41 -0.13 16 38 H 0.10 0.21 7.87 -51.93 -0.41 -0.20 16 39 H 0.44 1.85 7.67 -40.82 -0.31 1.54 16 40 H 0.41 0.70 7.13 45.56 0.32 1.02 16 41 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -39.83 378.26 -7.05 -46.89 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -4.97 Total: -3.19 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.63 Total: -0.14 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.34 Total: -33.48 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.83 Total: -31.56 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.83 -7.05 -46.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324939636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.786 kcal (2) G-P(sol) polarization free energy of solvation -39.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds