Wall clock time and date at job start Tue Mar 31 2020 20:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99559 * 2 1 4 4 C 1.50701 * 109.46786 * 179.97438 * 3 2 1 5 5 N 1.29033 * 124.91316 * 90.32913 * 4 3 2 6 6 C 1.31778 * 117.11978 * 180.22538 * 5 4 3 7 7 C 1.50705 * 122.74971 * 179.75234 * 6 5 4 8 8 C 1.50708 * 109.46877 * 304.71002 * 7 6 5 9 9 N 1.29939 * 126.28707 * 269.97681 * 8 7 6 10 10 O 1.21301 * 110.24820 * 179.72784 * 9 8 7 11 11 C 1.33635 * 109.81228 * 0.46466 * 10 9 8 12 12 C 1.50706 * 126.55435 * 179.80380 * 11 10 9 13 13 H 1.08997 * 109.47120 * 164.69104 * 12 11 10 14 14 N 1.46901 * 109.47033 * 44.68743 * 12 11 10 15 15 C 1.53001 * 109.46967 * 284.68925 * 12 11 10 16 16 C 1.53001 * 109.47113 * 184.99971 * 15 12 11 17 17 C 1.50695 * 109.46997 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00069 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99971 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00015 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00254 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46847 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47150 * 120.00048 * 21 19 17 24 24 H 1.48500 * 109.47001 * 240.00141 * 21 19 17 25 25 N 1.31133 * 106.89680 * 359.54056 * 11 10 9 26 26 C 1.33642 * 114.50563 * 359.48202 * 6 5 4 27 27 S 1.70979 * 124.91766 * 270.02265 * 4 3 2 28 28 H 1.09000 * 109.47274 * 60.00293 * 1 2 3 29 29 H 1.09003 * 109.46874 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47594 * 299.99937 * 1 2 3 31 31 H 1.09000 * 109.47292 * 60.00233 * 3 2 1 32 32 H 1.09001 * 109.47001 * 299.99501 * 3 2 1 33 33 H 1.08998 * 109.47605 * 184.71376 * 7 6 5 34 34 H 1.09004 * 109.47227 * 64.70808 * 7 6 5 35 35 H 1.00899 * 110.99713 * 176.05086 * 14 12 11 36 36 H 1.00910 * 110.99597 * 300.00239 * 14 12 11 37 37 H 1.09002 * 109.46941 * 304.99722 * 15 12 11 38 38 H 1.08998 * 109.47313 * 64.99216 * 15 12 11 39 39 H 1.09002 * 109.47014 * 299.99706 * 16 15 12 40 40 H 1.08996 * 109.47139 * 59.99471 * 16 15 12 41 41 H 0.97005 * 120.00324 * 179.97438 * 20 19 17 42 42 H 1.07994 * 126.04118 * 180.26075 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 7 4.2496 1.1341 -1.0571 6 6 5.5506 1.0255 -0.8779 7 6 6.5276 0.9484 -2.0228 8 6 6.1442 -0.1885 -2.9347 9 7 6.5513 -1.4191 -2.8425 10 8 6.0577 -2.0916 -3.7230 11 6 5.2728 -1.3287 -4.4897 12 6 4.4814 -1.7779 -5.6911 13 1 3.7404 -1.0191 -5.9424 14 7 3.8018 -3.0436 -5.3844 15 6 5.4262 -1.9807 -6.8773 16 6 4.6103 -2.3153 -8.1276 17 6 5.5409 -2.5157 -9.2959 18 1 6.6075 -2.4142 -9.1602 19 6 5.0306 -2.8288 -10.5379 20 7 3.7317 -2.9520 -10.7032 21 14 6.1841 -3.0765 -11.9863 22 1 7.5871 -2.8817 -11.5406 23 1 6.0202 -4.4526 -12.5199 24 1 5.8618 -2.0915 -13.0498 25 7 5.3183 -0.1157 -3.9936 26 6 5.9331 0.9949 0.4022 27 16 4.4875 1.1090 1.4030 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 7.5314 0.7790 -1.6331 34 1 6.5078 1.8845 -2.5810 35 1 3.2133 -3.3330 -6.1511 36 1 4.4680 -3.7637 -5.1480 37 1 5.9955 -1.0671 -7.0487 38 1 6.1112 -2.8003 -6.6603 39 1 4.0410 -3.2289 -7.9563 40 1 3.9253 -1.4957 -8.3446 41 1 3.3727 -3.1718 -11.5771 42 1 6.9489 0.9143 0.7600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326649545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:43 Heat of formation + Delta-G solvation = 60.492324 kcal Electronic energy + Delta-G solvation = -25877.087353 eV Core-core repulsion = 21987.439150 eV Total energy + Delta-G solvation = -3889.648203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.29979 -40.29291 -38.14515 -36.76051 -35.81017 -33.36423 -32.85941 -31.51723 -30.02551 -29.22923 -28.10778 -26.58033 -26.33777 -24.22435 -23.73531 -22.76045 -21.29928 -20.18842 -19.96452 -18.16665 -17.69804 -17.21785 -16.93451 -16.54841 -16.25635 -15.99539 -15.84884 -15.05876 -14.82303 -14.54174 -14.37527 -13.96431 -13.72639 -13.45644 -13.39501 -13.06708 -12.77482 -12.57113 -12.38732 -12.18506 -11.90613 -11.77746 -11.70644 -11.23282 -11.07363 -10.94438 -10.73656 -10.60123 -10.15665 -10.02397 -9.91846 -9.82477 -9.72787 -9.53801 -9.24489 -9.14903 -8.47152 -8.41338 -6.08897 -4.11776 0.28692 0.99740 1.31592 1.46831 2.28410 2.54190 3.11680 3.27027 3.33809 3.35068 3.39103 3.77022 3.89620 4.13767 4.40011 4.48484 4.70309 4.80682 4.87822 4.97392 4.98815 5.02396 5.10324 5.12949 5.23711 5.27685 5.38315 5.51081 5.59785 5.64591 5.73602 5.96217 6.19418 6.35603 6.47295 6.66554 6.82168 7.28015 7.44924 7.48299 7.60745 7.69399 7.88293 8.29959 8.41798 8.94007 9.53238 11.02132 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.002248 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.697874 B =12452.660794 C =13560.941810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.140 3.860 4 C 0.044 3.956 5 N -0.434 5.434 6 C 0.072 3.928 7 C 0.050 3.950 8 C 0.175 3.825 9 N -0.391 5.391 10 O 0.077 5.923 11 C 0.214 3.786 12 C 0.182 3.818 13 H 0.122 0.878 14 N -0.839 5.839 15 C -0.142 4.142 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 N -0.470 5.470 26 C -0.245 4.245 27 S 0.142 5.858 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.365 0.635 36 H 0.343 0.657 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.020 0.980 40 H 0.022 0.978 41 H 0.261 0.739 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 9.506 26.174 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C 0.060 3.940 4 C -0.234 4.234 5 N -0.149 5.149 6 C -0.062 4.062 7 C 0.009 3.991 8 C -0.099 4.099 9 N -0.100 5.100 10 O 0.019 5.981 11 C -0.007 4.007 12 C 0.068 3.932 13 H 0.140 0.860 14 N -0.373 5.373 15 C -0.182 4.182 16 C -0.012 4.012 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 N -0.203 5.203 26 C -0.384 4.384 27 S 0.397 5.603 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.182 0.818 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.012 9.907 27.873 29.649 hybrid contribution 1.466 -0.475 -2.492 2.930 sum -0.546 9.432 25.381 27.082 Atomic orbital electron populations 1.22817 0.79815 1.03499 1.00296 1.87984 1.20457 1.26060 1.95500 1.20779 0.84454 0.86289 1.02458 1.26562 1.00423 1.05315 0.91143 1.66032 1.04307 1.13192 1.31388 1.19864 0.90140 1.02684 0.93464 1.18372 0.96097 0.94716 0.89908 1.25221 0.95664 0.93288 0.95690 1.74554 1.20161 1.05809 1.09483 1.85232 1.45790 1.37107 1.29960 1.29071 0.91867 0.84764 0.95026 1.20200 0.94100 0.94602 0.84320 0.86040 1.58961 1.26247 1.05038 1.47021 1.22529 0.98611 1.01860 0.95232 1.19107 0.95149 0.97018 0.89971 1.21186 0.93316 1.47909 0.93675 0.92588 1.25006 0.95085 0.95280 0.98939 1.69955 1.11140 1.48437 1.23628 0.86522 0.81110 0.77789 0.82521 1.19753 1.20940 1.20936 1.71879 1.18645 1.20666 1.09150 1.26936 1.03775 1.12068 0.95648 1.83874 0.97534 1.66599 1.12251 0.93365 0.89003 0.93821 0.90930 0.89802 0.87338 0.86765 0.81759 0.84428 0.91993 0.92267 0.96196 0.95980 0.92901 0.79999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.38 10.69 -35.23 -0.38 -4.75 16 3 C 0.14 1.34 6.51 36.01 0.23 1.57 16 4 C 0.04 0.51 7.02 -13.45 -0.09 0.42 16 5 N -0.43 -6.13 10.39 -8.05 -0.08 -6.21 16 6 C 0.07 0.89 6.06 -84.22 -0.51 0.38 16 7 C 0.05 0.59 6.34 -29.03 -0.18 0.41 16 8 C 0.17 2.82 7.35 -156.38 -1.15 1.67 16 9 N -0.39 -6.71 12.16 30.89 0.38 -6.34 16 10 O 0.08 1.35 11.29 18.12 0.20 1.55 16 11 C 0.21 3.78 7.32 -13.05 -0.10 3.68 16 12 C 0.18 3.13 3.35 -68.86 -0.23 2.89 16 13 H 0.12 2.13 8.14 -51.93 -0.42 1.71 16 14 N -0.84 -13.26 9.17 -5.65 -0.05 -13.32 16 15 C -0.14 -2.77 4.78 -26.73 -0.13 -2.90 16 16 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 17 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 21 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 N -0.47 -8.45 11.55 -9.87 -0.11 -8.56 16 26 C -0.24 -2.31 11.07 29.12 0.32 -1.99 16 27 S 0.14 1.26 23.18 -107.50 -2.49 -1.23 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.11 0.95 8.03 -51.93 -0.42 0.54 16 34 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.37 5.75 7.55 -39.29 -0.30 5.45 16 36 H 0.34 5.06 8.97 -39.29 -0.35 4.71 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.48 6.87 -51.93 -0.36 0.12 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.18 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -33.73 379.64 -7.98 -41.71 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.61 Total: 5.37 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -1.27 Total: -5.06 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.86 Total: -59.53 kcal Atomic # 8 Polarization: -3.03 SS G_CDS: -0.17 Total: -3.20 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.49 Total: -1.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.73 -7.98 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326649545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.204 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds