Wall clock time and date at job start Tue Mar 31 2020 20:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48495 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47114 * 300.00247 * 3 2 1 6 6 H 1.48505 * 109.46890 * 59.99856 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.09003 * 110.28629 * 35.66608 * 14 13 11 16 16 C 1.54259 * 110.32070 * 273.54349 * 14 13 11 17 17 C 1.54384 * 105.06096 * 241.09991 * 16 14 13 18 18 N 1.48568 * 104.58961 * 23.85697 * 17 16 14 19 19 C 1.46907 * 110.99440 * 200.95908 * 18 17 16 20 20 C 1.50698 * 109.47112 * 290.12356 * 19 18 17 21 21 C 1.38248 * 119.97505 * 269.73239 * 20 19 18 22 22 C 1.38197 * 120.02669 * 179.72742 * 21 20 19 23 23 C 1.38467 * 119.97115 * 0.56292 * 22 21 20 24 24 F 1.35102 * 120.02358 * 179.68247 * 23 22 21 25 25 C 1.38455 * 119.94681 * 359.70957 * 23 22 21 26 26 C 1.38193 * 119.97797 * 359.97438 * 25 23 22 27 27 C 1.48559 * 104.22163 * 320.51433 * 18 17 16 28 28 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 30 30 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 31 31 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 32 32 H 1.08992 * 110.32889 * 359.97438 * 16 14 13 33 33 H 1.09002 * 110.32673 * 122.10659 * 16 14 13 34 34 H 1.09001 * 110.40767 * 142.62914 * 17 16 14 35 35 H 1.08997 * 110.41637 * 264.96032 * 17 16 14 36 36 H 1.08993 * 109.47620 * 50.12574 * 19 18 17 37 37 H 1.08996 * 109.46845 * 170.12446 * 19 18 17 38 38 H 1.08001 * 119.98549 * 359.97247 * 21 20 19 39 39 H 1.08000 * 120.01806 * 180.25287 * 22 21 20 40 40 H 1.08004 * 120.00741 * 179.97438 * 25 23 22 41 41 H 1.08003 * 119.98922 * 179.97438 * 26 25 23 42 42 H 1.09010 * 110.40967 * 280.70457 * 27 18 17 43 43 H 1.09000 * 110.41295 * 158.26714 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 2.3304 -7.7150 -0.0051 15 1 1.4201 -7.7772 -0.6015 16 6 2.0584 -8.1867 1.4382 17 6 2.9852 -9.4042 1.6438 18 7 4.0822 -9.2096 0.6609 19 6 4.7636 -10.4791 0.3744 20 6 5.5504 -10.9112 1.5849 21 6 6.8655 -10.5113 1.7327 22 6 7.5863 -10.9023 2.8451 23 6 6.9945 -11.7046 3.8060 24 9 7.7002 -12.0927 4.8907 25 6 5.6791 -12.1091 3.6540 26 6 4.9582 -11.7115 2.5441 27 6 3.3987 -8.6870 -0.5502 28 1 -0.4850 0.8401 0.0004 29 1 3.1238 -3.7309 -0.8925 30 1 3.1252 -3.7317 0.8875 31 1 3.8009 -6.1834 -0.0040 32 1 2.3075 -7.3977 2.1477 33 1 1.0147 -8.4804 1.5502 34 1 3.3817 -9.4129 2.6591 35 1 2.4480 -10.3300 1.4382 36 1 4.0239 -11.2416 0.1308 37 1 5.4398 -10.3460 -0.4700 38 1 7.3285 -9.8898 0.9805 39 1 8.6124 -10.5864 2.9624 40 1 5.2166 -12.7352 4.4028 41 1 3.9323 -12.0273 2.4251 42 1 2.9267 -9.5007 -1.1012 43 1 4.1064 -8.1560 -1.1868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481698574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:54 Heat of formation + Delta-G solvation = -51.058378 kcal Electronic energy + Delta-G solvation = -25358.316622 eV Core-core repulsion = 21443.911255 eV Total energy + Delta-G solvation = -3914.405366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.24726 -40.25391 -39.36571 -38.08956 -34.50798 -32.43654 -32.39583 -31.56904 -30.20331 -29.51627 -27.76666 -25.61602 -25.39551 -23.50227 -22.17653 -21.31633 -21.06089 -20.17775 -18.04543 -17.85014 -16.85355 -16.67394 -16.48662 -16.10492 -15.95994 -15.77741 -14.94912 -14.85009 -14.79348 -14.43685 -14.32348 -14.02674 -13.87859 -13.54255 -13.19961 -13.03401 -12.81963 -12.63338 -12.44441 -12.28517 -11.99555 -11.71771 -11.63098 -11.49355 -11.25084 -11.06557 -11.02241 -11.00185 -10.74271 -9.79327 -9.52193 -9.37280 -9.14280 -9.06773 -8.91014 -8.74374 -8.21854 -6.48695 -6.21007 -3.91141 0.69309 0.82204 3.05318 3.07221 3.11530 3.22220 3.29129 3.34149 3.73251 3.76210 3.86860 4.20624 4.21396 4.28081 4.30327 4.48569 4.61085 4.73914 4.82506 4.94722 5.01573 5.08859 5.14147 5.14375 5.17685 5.22882 5.38435 5.47071 5.51229 5.58202 5.61691 5.69556 5.70977 5.79902 5.88247 5.91955 6.03119 6.09973 6.17068 6.40541 6.47183 6.57542 6.72961 7.60963 7.76907 8.36464 8.64725 9.24617 10.86458 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.001882 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.982490 B =14876.091285 C =15730.648640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.727 5.727 14 C 0.146 3.854 15 H 0.095 0.905 16 C -0.136 4.136 17 C 0.033 3.967 18 N -0.504 5.504 19 C 0.083 3.917 20 C -0.086 4.086 21 C -0.069 4.069 22 C -0.154 4.154 23 C 0.096 3.904 24 F -0.142 7.142 25 C -0.154 4.154 26 C -0.084 4.084 27 C 0.025 3.975 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.401 0.599 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.059 0.941 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.734 -26.958 2.460 30.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.394 6.394 13 N -0.382 5.382 14 C 0.040 3.960 15 H 0.113 0.887 16 C -0.176 4.176 17 C -0.095 4.095 18 N -0.228 5.228 19 C -0.045 4.045 20 C -0.087 4.087 21 C -0.087 4.087 22 C -0.173 4.173 23 C 0.076 3.924 24 F -0.120 7.120 25 C -0.173 4.173 26 C -0.103 4.103 27 C -0.103 4.103 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.235 0.765 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.077 0.923 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.002 -26.834 2.678 29.518 hybrid contribution 2.006 0.668 0.033 2.114 sum 14.008 -26.166 2.712 29.803 Atomic orbital electron populations 1.70029 1.05944 1.27312 1.47030 1.24996 0.95034 0.99046 0.94583 0.86117 0.79601 0.81892 0.77883 1.19612 1.20589 1.20573 1.22911 0.94948 0.91652 1.58718 0.90879 1.85379 1.05033 0.96362 1.96709 1.23529 1.06493 0.95419 1.04922 1.20319 0.86548 0.86316 0.74931 1.90693 1.15399 1.85608 1.47665 1.46061 1.10013 1.04726 1.77385 1.21527 0.96724 0.81515 0.96225 0.88704 1.22804 0.99490 0.97785 0.97481 1.23189 0.91407 0.97281 0.97585 1.65479 1.24429 1.24518 1.08372 1.21194 0.97328 0.90847 0.95146 1.19760 0.94423 0.97778 0.96690 1.20909 0.93459 0.97539 0.96836 1.21182 1.01476 0.99937 0.94673 1.17763 0.90667 0.98785 0.85160 1.91505 1.78472 1.89450 1.52605 1.21118 0.93105 1.03034 1.00038 1.20928 0.99677 0.96819 0.92835 1.23426 0.96315 0.97739 0.92827 0.92263 0.89270 0.89234 0.76457 0.90132 0.90512 0.89939 0.93663 0.93304 0.89457 0.84795 0.84702 0.84796 0.85294 0.92326 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.72 7.84 -10.98 -0.09 9.64 16 12 O -0.52 -11.52 15.56 5.56 0.09 -11.44 16 13 N -0.73 -9.46 5.00 -52.47 -0.26 -9.72 16 14 C 0.15 1.62 3.36 -66.55 -0.22 1.39 16 15 H 0.09 1.20 7.65 -51.93 -0.40 0.80 16 16 C -0.14 -1.45 6.78 -25.35 -0.17 -1.62 16 17 C 0.03 0.27 5.47 -2.18 -0.01 0.26 16 18 N -0.50 -3.94 5.36 -231.40 -1.24 -5.19 16 19 C 0.08 0.51 4.97 -4.97 -0.02 0.48 16 20 C -0.09 -0.59 5.10 -104.62 -0.53 -1.12 16 21 C -0.07 -0.47 9.70 -39.59 -0.38 -0.86 16 22 C -0.15 -1.14 10.03 -39.51 -0.40 -1.53 16 23 C 0.10 0.80 7.30 -39.42 -0.29 0.51 16 24 F -0.14 -1.34 17.27 2.25 0.04 -1.30 16 25 C -0.15 -1.11 10.03 -39.52 -0.40 -1.51 16 26 C -0.08 -0.55 8.73 -39.60 -0.35 -0.90 16 27 C 0.03 0.20 6.09 -2.18 -0.01 0.18 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.40 4.31 8.56 -40.82 -0.35 3.96 16 32 H 0.08 1.01 7.95 -51.93 -0.41 0.59 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.71 7.81 -51.93 -0.41 0.31 16 35 H 0.05 0.32 7.83 -51.93 -0.41 -0.09 16 36 H 0.05 0.27 7.83 -51.93 -0.41 -0.14 16 37 H 0.09 0.46 8.07 -51.93 -0.42 0.04 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 42 H 0.06 0.40 8.00 -51.92 -0.42 -0.02 16 43 H 0.09 0.68 7.99 -51.93 -0.41 0.26 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -34.22 378.83 -10.76 -44.97 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.13 Total: 0.74 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -2.46 Total: -10.86 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: -0.77 Total: -40.36 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.22 -10.76 -44.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481698574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.086 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds