Wall clock time and date at job start Tue Mar 31 2020 20:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 120.00018 * 2 1 4 4 H 1.48499 * 109.46947 * 269.99657 * 3 2 1 5 5 H 1.48496 * 109.47120 * 30.00066 * 3 2 1 6 6 H 1.48498 * 109.47106 * 150.00227 * 3 2 1 7 7 C 1.38814 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99665 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00401 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99985 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46935 * 34.99745 * 10 9 7 12 12 C 1.53002 * 109.46929 * 155.00034 * 10 9 7 13 13 N 1.46499 * 109.46983 * 304.99448 * 12 10 9 14 14 C 1.34777 * 119.99754 * 180.02562 * 13 12 10 15 15 O 1.21603 * 119.99975 * 359.97438 * 14 13 12 16 16 C 1.47385 * 119.99884 * 180.02562 * 14 13 12 17 17 C 1.41389 * 126.42717 * 90.15172 * 16 14 13 18 18 Cl 1.73608 * 126.00210 * 0.03287 * 17 16 14 19 19 N 1.30529 * 107.99388 * 180.29014 * 17 16 14 20 20 N 1.39927 * 108.89108 * 359.74003 * 19 17 16 21 21 H 0.97003 * 125.73654 * 180.02562 * 20 19 17 22 22 C 1.34234 * 108.52791 * 0.02562 * 20 19 17 23 23 C 1.50697 * 126.28613 * 179.97438 * 22 20 19 24 24 C 1.53000 * 117.49504 * 351.40273 * 23 22 20 25 25 C 1.52997 * 60.00347 * 107.48912 * 24 23 22 26 26 C 1.53001 * 109.46613 * 274.99702 * 10 9 7 27 27 C 1.53006 * 117.49445 * 128.75084 * 26 10 9 28 28 C 1.52996 * 117.49962 * 60.09362 * 26 10 9 29 29 H 0.96996 * 120.00038 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99808 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.46719 * 184.99947 * 12 10 9 32 32 H 1.08994 * 109.46986 * 64.99661 * 12 10 9 33 33 H 0.97007 * 120.00233 * 0.02562 * 13 12 10 34 34 H 1.08990 * 115.56356 * 205.71445 * 23 22 20 35 35 H 1.09002 * 117.49696 * 214.98125 * 24 23 22 36 36 H 1.09002 * 117.50343 * 0.02562 * 24 23 22 37 37 H 1.08999 * 117.49685 * 252.51237 * 25 24 23 38 38 H 1.08999 * 117.52022 * 107.47599 * 25 24 23 39 39 H 1.08997 * 115.55146 * 274.41561 * 26 10 9 40 40 H 1.09005 * 117.49619 * 359.97438 * 27 26 10 41 41 H 1.08999 * 117.49731 * 145.01519 * 27 26 10 42 42 H 1.08997 * 117.49640 * 214.97598 * 28 26 10 43 43 H 1.08997 * 117.50114 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5649 -3.2063 -0.5887 12 6 5.4996 -2.2587 -0.6080 13 7 5.3625 -1.6634 -1.9395 14 6 6.4607 -1.3861 -2.6700 15 8 7.5653 -1.6296 -2.2235 16 6 6.3229 -0.7867 -4.0093 17 6 6.2912 0.5941 -4.3120 18 17 6.4093 1.8929 -3.1661 19 7 6.1522 0.7206 -5.6037 20 7 6.0952 -0.5531 -6.1802 21 1 5.9948 -0.7428 -7.1261 22 6 6.2028 -1.4683 -5.2041 23 6 6.1890 -2.9649 -5.3794 24 6 5.8383 -3.5106 -6.7650 25 6 7.2794 -3.5836 -6.2566 26 6 4.2577 -2.9756 1.4381 27 6 3.8337 -4.4171 1.7268 28 6 2.9740 -3.2520 2.2232 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 0.0007 31 1 6.0110 -3.2178 -0.6897 32 1 6.0785 -1.5915 0.0305 33 1 4.4813 -1.4689 -2.2955 34 1 5.8547 -3.5368 -4.5139 35 1 5.2730 -4.4415 -6.8110 36 1 5.6179 -2.7871 -7.5500 37 1 8.0067 -2.9080 -6.7068 38 1 7.6626 -4.5623 -5.9677 39 1 5.1107 -2.5817 1.9906 40 1 3.4507 -5.0056 0.8931 41 1 4.4075 -4.9713 2.4696 42 1 2.9825 -3.0401 3.2924 43 1 2.0257 -3.0738 1.7162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490668498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:20 Heat of formation + Delta-G solvation = 97.910990 kcal Electronic energy + Delta-G solvation = -27128.664437 eV Core-core repulsion = 23238.595123 eV Total energy + Delta-G solvation = -3890.069314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.81392 -39.13209 -37.60515 -37.55634 -36.78948 -34.70603 -33.41567 -31.75752 -31.27281 -30.64261 -28.34592 -24.70581 -23.63992 -22.93998 -22.60107 -21.81065 -21.68397 -21.37464 -20.07778 -19.46832 -18.25506 -17.53409 -16.46961 -16.21254 -15.89537 -15.40254 -15.32129 -15.08081 -14.78199 -14.43061 -14.14293 -13.90456 -13.60343 -13.12035 -12.82039 -12.69594 -12.37385 -12.31832 -12.07781 -11.78988 -11.50646 -11.38416 -11.28978 -11.13441 -10.92109 -10.87830 -10.78151 -10.71841 -10.24748 -9.92917 -9.71398 -9.57468 -9.51203 -9.38051 -8.99787 -8.88129 -8.75534 -7.34574 -5.81391 -3.17297 1.24506 1.33327 2.00918 2.60852 2.71854 3.35031 3.37447 3.41604 3.46213 3.56035 3.93516 4.24477 4.40659 4.41858 4.56715 4.64812 4.69499 5.05090 5.11184 5.12795 5.27767 5.34339 5.38231 5.43394 5.54462 5.57330 5.61183 5.66957 5.70889 5.77179 5.93539 5.99976 6.13388 6.20274 6.48738 6.56351 6.70095 6.73446 6.78095 6.99891 7.05167 7.81004 7.92823 8.36602 8.44172 9.14679 9.87634 10.06666 11.36271 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.004360 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.003804 B = 6420.395054 C = 7766.270282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.011 3.989 3 Si 0.874 3.126 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.199 3.801 11 H 0.064 0.936 12 C 0.115 3.885 13 N -0.705 5.705 14 C 0.594 3.406 15 O -0.537 6.537 16 C -0.257 4.257 17 C 0.162 3.838 18 Cl 0.025 6.975 19 N -0.273 5.273 20 N -0.448 5.448 21 H 0.445 0.555 22 C 0.175 3.825 23 C -0.105 4.105 24 C -0.170 4.170 25 C -0.157 4.157 26 C -0.163 4.163 27 C -0.193 4.193 28 C -0.154 4.154 29 H 0.259 0.741 30 H 0.363 0.637 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.411 0.589 34 H 0.138 0.862 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.297 -7.409 -12.168 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.185 4.185 3 Si 0.704 3.296 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.089 3.911 11 H 0.082 0.918 12 C -0.009 4.009 13 N -0.357 5.357 14 C 0.377 3.623 15 O -0.414 6.414 16 C -0.272 4.272 17 C -0.031 4.031 18 Cl 0.052 6.948 19 N -0.099 5.099 20 N -0.157 5.157 21 H 0.292 0.708 22 C 0.043 3.957 23 C -0.125 4.125 24 C -0.207 4.207 25 C -0.194 4.194 26 C -0.185 4.185 27 C -0.231 4.231 28 C -0.192 4.192 29 H 0.069 0.931 30 H 0.196 0.804 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.248 0.752 34 H 0.156 0.844 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.720 -6.655 -12.669 19.825 hybrid contribution 0.082 1.080 0.315 1.128 sum 13.801 -5.574 -12.354 19.344 Atomic orbital electron populations 1.69682 1.05086 1.25846 1.57224 1.24608 0.95087 0.96987 1.01831 0.86714 0.79434 0.85388 0.78096 1.20783 1.21859 1.20183 1.18984 0.80317 0.94477 1.43285 0.89019 1.42839 1.04100 1.01723 1.89764 1.20019 0.89740 0.89707 0.91637 0.91822 1.21698 0.98437 0.98175 0.82603 1.46019 1.09405 1.62499 1.17764 1.17061 0.84490 0.77660 0.83063 1.90767 1.25840 1.53059 1.71760 1.19721 1.21696 0.91221 0.94577 1.22566 1.00919 0.89227 0.90360 1.98441 1.96207 1.46192 1.53918 1.77178 1.25628 0.99829 1.07215 1.45748 1.57842 1.02626 1.09463 0.70842 1.20328 0.96831 0.91292 0.87279 1.20718 1.06930 0.87336 0.97543 1.23075 0.98991 1.03649 0.94971 1.23109 0.91786 1.03006 1.01533 1.22956 0.99088 0.96996 0.99465 1.22951 1.05465 0.91314 1.03391 1.22845 0.96813 1.00387 0.99109 0.93056 0.80404 0.91034 0.91615 0.75219 0.84400 0.86951 0.88817 0.88301 0.87114 0.89117 0.89436 0.90072 0.90237 0.87113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.97 55.49 0.78 -27.22 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 3 Si 0.87 21.63 27.74 -169.99 -4.71 16.91 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 7 C -0.24 -6.16 9.11 -15.06 -0.14 -6.30 16 8 H 0.09 2.51 7.14 -52.48 -0.37 2.13 16 9 N -0.74 -15.82 4.34 -53.42 -0.23 -16.06 16 10 C 0.20 3.43 2.70 -67.93 -0.18 3.25 16 11 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 12 C 0.12 1.79 5.21 -4.04 -0.02 1.77 16 13 N -0.71 -11.10 5.38 -61.40 -0.33 -11.43 16 14 C 0.59 9.70 7.31 -12.54 -0.09 9.61 16 15 O -0.54 -10.18 17.11 5.27 0.09 -10.09 16 16 C -0.26 -3.82 5.88 -105.04 -0.62 -4.44 16 17 C 0.16 2.51 7.89 -16.91 -0.13 2.38 16 18 Cl 0.02 0.39 29.19 -51.86 -1.51 -1.13 16 19 N -0.27 -3.85 12.64 33.18 0.42 -3.43 16 20 N -0.45 -4.70 7.17 33.86 0.24 -4.46 16 21 H 0.45 2.96 7.95 -182.73 -1.45 1.51 16 22 C 0.17 2.02 6.80 -81.60 -0.55 1.46 16 23 C -0.11 -0.91 6.02 -91.77 -0.55 -1.46 16 24 C -0.17 -0.96 10.14 -26.73 -0.27 -1.23 16 25 C -0.16 -1.01 10.23 -26.73 -0.27 -1.29 16 26 C -0.16 -2.68 5.36 -90.62 -0.49 -3.16 16 27 C -0.19 -2.80 10.18 -26.69 -0.27 -3.07 16 28 C -0.15 -2.68 9.78 -26.70 -0.26 -2.94 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.36 8.00 5.66 -40.82 -0.23 7.77 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.41 6.66 8.12 -40.82 -0.33 6.33 16 34 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.41 7.16 -51.93 -0.37 0.03 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 40 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.11 2.25 6.23 -51.93 -0.32 1.93 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -32.31 380.09 -10.37 -42.68 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -6.88 Total: 13.71 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -3.95 Total: -5.21 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.87 Total: -62.60 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -1.51 Total: -1.13 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.31 -10.37 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490668498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.588 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds