Wall clock time and date at job start Tue Mar 31 2020 20:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 120.00018 * 2 1 4 4 H 1.48499 * 109.46947 * 269.99657 * 3 2 1 5 5 H 1.48496 * 109.47120 * 30.00066 * 3 2 1 6 6 H 1.48498 * 109.47106 * 150.00227 * 3 2 1 7 7 C 1.38814 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99665 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00401 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99985 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46935 * 34.99745 * 10 9 7 12 12 C 1.53002 * 109.46929 * 155.00034 * 10 9 7 13 13 N 1.46499 * 109.46983 * 304.99448 * 12 10 9 14 14 C 1.34777 * 119.99754 * 180.02562 * 13 12 10 15 15 O 1.21603 * 119.99975 * 359.97438 * 14 13 12 16 16 C 1.47385 * 119.99884 * 180.02562 * 14 13 12 17 17 C 1.41389 * 126.42717 * 90.15172 * 16 14 13 18 18 Cl 1.73608 * 126.00210 * 0.03287 * 17 16 14 19 19 N 1.30529 * 107.99388 * 180.29014 * 17 16 14 20 20 N 1.39927 * 108.89108 * 359.74003 * 19 17 16 21 21 H 0.97003 * 125.73654 * 180.02562 * 20 19 17 22 22 C 1.34234 * 108.52791 * 0.02562 * 20 19 17 23 23 C 1.50697 * 126.28613 * 179.97438 * 22 20 19 24 24 C 1.53000 * 117.49504 * 351.40273 * 23 22 20 25 25 C 1.52997 * 60.00347 * 107.48912 * 24 23 22 26 26 C 1.53001 * 109.46613 * 274.99702 * 10 9 7 27 27 C 1.53006 * 117.49445 * 128.75084 * 26 10 9 28 28 C 1.52996 * 117.49962 * 60.09362 * 26 10 9 29 29 H 0.96996 * 120.00038 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99808 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.46719 * 184.99947 * 12 10 9 32 32 H 1.08994 * 109.46986 * 64.99661 * 12 10 9 33 33 H 0.97007 * 120.00233 * 0.02562 * 13 12 10 34 34 H 1.08990 * 115.56356 * 205.71445 * 23 22 20 35 35 H 1.09002 * 117.49696 * 214.98125 * 24 23 22 36 36 H 1.09002 * 117.50343 * 0.02562 * 24 23 22 37 37 H 1.08999 * 117.49685 * 252.51237 * 25 24 23 38 38 H 1.08999 * 117.52022 * 107.47599 * 25 24 23 39 39 H 1.08997 * 115.55146 * 274.41561 * 26 10 9 40 40 H 1.09005 * 117.49619 * 359.97438 * 27 26 10 41 41 H 1.08999 * 117.49731 * 145.01519 * 27 26 10 42 42 H 1.08997 * 117.49640 * 214.97598 * 28 26 10 43 43 H 1.08997 * 117.50114 * 359.97438 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5649 -3.2063 -0.5887 12 6 5.4996 -2.2587 -0.6080 13 7 5.3625 -1.6634 -1.9395 14 6 6.4607 -1.3861 -2.6700 15 8 7.5653 -1.6296 -2.2235 16 6 6.3229 -0.7867 -4.0093 17 6 6.2912 0.5941 -4.3120 18 17 6.4093 1.8929 -3.1661 19 7 6.1522 0.7206 -5.6037 20 7 6.0952 -0.5531 -6.1802 21 1 5.9948 -0.7428 -7.1261 22 6 6.2028 -1.4683 -5.2041 23 6 6.1890 -2.9649 -5.3794 24 6 5.8383 -3.5106 -6.7650 25 6 7.2794 -3.5836 -6.2566 26 6 4.2577 -2.9756 1.4381 27 6 3.8337 -4.4171 1.7268 28 6 2.9740 -3.2520 2.2232 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3621 0.0007 31 1 6.0110 -3.2178 -0.6897 32 1 6.0785 -1.5915 0.0305 33 1 4.4813 -1.4689 -2.2955 34 1 5.8547 -3.5368 -4.5139 35 1 5.2730 -4.4415 -6.8110 36 1 5.6179 -2.7871 -7.5500 37 1 8.0067 -2.9080 -6.7068 38 1 7.6626 -4.5623 -5.9677 39 1 5.1107 -2.5817 1.9906 40 1 3.4507 -5.0056 0.8931 41 1 4.4075 -4.9713 2.4696 42 1 2.9825 -3.0401 3.2924 43 1 2.0257 -3.0738 1.7162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490668498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:19 Heat of formation + Delta-G solvation = 76.145498 kcal Electronic energy + Delta-G solvation = -27129.608259 eV Core-core repulsion = 23238.595123 eV Total energy + Delta-G solvation = -3891.013137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.80590 -40.43706 -38.98837 -38.32325 -37.81642 -36.11011 -35.15575 -33.18903 -32.61088 -31.81041 -29.85790 -25.88814 -24.97343 -24.11464 -23.42169 -23.03183 -22.88000 -22.40251 -21.44699 -20.73575 -19.63930 -18.97343 -17.61123 -17.18606 -17.00757 -16.85246 -16.43165 -16.16873 -16.04848 -15.89632 -15.52390 -15.21313 -14.82148 -14.62861 -14.40562 -14.06284 -13.53353 -13.43674 -13.10997 -12.96400 -12.77662 -12.74840 -12.48748 -12.35027 -12.24309 -12.16176 -12.07976 -11.92138 -11.64043 -11.48497 -11.23869 -10.98845 -10.91217 -10.77170 -10.57064 -10.06235 -9.88331 -9.29019 -7.96202 -5.26968 0.25799 0.31312 0.89799 1.38544 1.40812 1.44782 1.45877 1.71506 2.33429 2.50838 2.80282 3.03528 3.22068 3.40016 3.61755 3.62936 3.68618 3.85923 3.90094 3.96987 4.02869 4.19439 4.36982 4.39262 4.41221 4.54387 4.63853 4.69357 4.70750 4.84475 4.93400 4.94971 5.01253 5.14526 5.15448 5.21328 5.43583 5.47132 5.54629 5.86374 5.87204 6.11497 6.26700 6.51798 7.13069 7.16881 7.88735 8.06472 9.24982 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.004360 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.003804 B = 6420.395054 C = 7766.270282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.053 4.053 3 Si 0.927 3.073 4 H -0.281 1.281 5 H -0.305 1.305 6 H -0.260 1.260 7 C -0.200 4.200 8 H 0.070 0.930 9 N -0.743 5.743 10 C 0.200 3.800 11 H 0.063 0.937 12 C 0.124 3.876 13 N -0.703 5.703 14 C 0.602 3.398 15 O -0.567 6.567 16 C -0.293 4.293 17 C 0.146 3.854 18 Cl 0.011 6.989 19 N -0.289 5.289 20 N -0.427 5.427 21 H 0.463 0.537 22 C 0.199 3.801 23 C -0.135 4.135 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.170 4.170 27 C -0.159 4.159 28 C -0.178 4.178 29 H 0.253 0.747 30 H 0.362 0.638 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.409 0.591 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.241 -9.284 -13.489 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.244 4.244 3 Si 0.757 3.243 4 H -0.208 1.208 5 H -0.232 1.232 6 H -0.185 1.185 7 C -0.331 4.331 8 H 0.088 0.912 9 N -0.385 5.385 10 C 0.092 3.908 11 H 0.081 0.919 12 C 0.000 4.000 13 N -0.354 5.354 14 C 0.387 3.613 15 O -0.446 6.446 16 C -0.309 4.309 17 C -0.046 4.046 18 Cl 0.039 6.961 19 N -0.115 5.115 20 N -0.138 5.138 21 H 0.314 0.686 22 C 0.065 3.935 23 C -0.155 4.155 24 C -0.185 4.185 25 C -0.186 4.186 26 C -0.191 4.191 27 C -0.196 4.196 28 C -0.216 4.216 29 H 0.062 0.938 30 H 0.194 0.806 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.104 0.896 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.715 -8.557 -14.015 22.729 hybrid contribution -0.490 1.469 0.658 1.683 sum 15.225 -7.087 -13.356 21.458 Atomic orbital electron populations 1.69825 1.06723 1.25985 1.60707 1.25165 0.95608 0.99883 1.03773 0.85825 0.78710 0.81858 0.77936 1.20757 1.23234 1.18503 1.18927 0.82007 0.93124 1.39038 0.91242 1.42849 1.02657 1.03402 1.89610 1.20162 0.90230 0.87750 0.92641 0.91860 1.21625 0.96992 0.99074 0.82312 1.46017 1.09250 1.62340 1.17746 1.17168 0.83874 0.76852 0.83409 1.90740 1.26797 1.54457 1.72596 1.19713 1.24867 0.91336 0.94959 1.22636 1.02045 0.89185 0.90746 1.98422 1.96335 1.46811 1.54519 1.77100 1.26095 1.01587 1.06722 1.45734 1.56367 1.01442 1.10281 0.68648 1.20660 0.93920 0.92613 0.86262 1.20826 1.10146 0.85261 0.99307 1.23258 0.98281 1.04157 0.92776 1.23227 0.92132 1.03176 1.00074 1.22890 0.98801 0.99123 0.98264 1.23026 1.02986 0.90141 1.03473 1.22721 0.95674 1.03886 0.99295 0.93777 0.80550 0.88961 0.92150 0.75470 0.84964 0.85508 0.87168 0.88049 0.85994 0.87910 0.88703 0.87272 0.89590 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.86 13.97 21.65 0.30 -60.55 16 2 C -0.05 -2.98 5.50 84.86 0.47 -2.51 16 3 Si 0.93 45.38 27.74 68.60 1.90 47.28 16 4 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 6 H -0.26 -11.85 6.52 99.48 0.65 -11.20 16 7 C -0.20 -10.33 9.11 84.03 0.77 -9.56 16 8 H 0.07 3.90 7.14 -2.91 -0.02 3.88 16 9 N -0.74 -31.24 4.34 -322.92 -1.40 -32.64 16 10 C 0.20 6.63 2.70 44.99 0.12 6.75 16 11 H 0.06 2.13 7.84 -2.39 -0.02 2.11 16 12 C 0.12 3.64 5.21 86.38 0.45 4.09 16 13 N -0.70 -21.42 5.38 -466.43 -2.51 -23.93 16 14 C 0.60 19.21 7.31 86.65 0.63 19.84 16 15 O -0.57 -21.06 17.11 -4.04 -0.07 -21.12 16 16 C -0.29 -8.50 5.88 -20.13 -0.12 -8.62 16 17 C 0.15 4.46 7.89 85.66 0.68 5.14 16 18 Cl 0.01 0.36 29.19 -2.72 -0.08 0.28 16 19 N -0.29 -7.86 12.64 -48.95 -0.62 -8.48 16 20 N -0.43 -8.11 7.17 -46.79 -0.34 -8.44 16 21 H 0.46 4.83 7.95 -213.43 -1.70 3.13 16 22 C 0.20 4.25 6.80 42.15 0.29 4.54 16 23 C -0.14 -2.02 6.02 -11.54 -0.07 -2.08 16 24 C -0.15 -1.12 10.14 30.59 0.31 -0.81 16 25 C -0.15 -1.45 10.23 30.60 0.31 -1.13 16 26 C -0.17 -5.20 5.36 -10.79 -0.06 -5.26 16 27 C -0.16 -4.13 10.18 30.62 0.31 -3.82 16 28 C -0.18 -6.04 9.78 30.62 0.30 -5.74 16 29 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.36 15.57 5.66 -92.71 -0.52 15.05 16 31 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.41 12.96 8.12 -92.70 -0.75 12.21 16 34 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.11 0.48 7.16 -2.39 -0.02 0.47 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.10 2.96 8.11 -2.39 -0.02 2.94 16 40 H 0.09 2.36 8.05 -2.38 -0.02 2.34 16 41 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.07 3.07 6.23 -2.39 -0.01 3.06 16 Total: -1.00 -71.72 380.09 -0.37 -72.09 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -1.95 Total: 34.69 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 4.39 Total: 0.83 kcal Atomic # 7 Polarization: -129.48 SS G_CDS: -4.57 Total: -134.04 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.07 Total: -21.12 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.90 Total: 47.28 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -0.08 Total: 0.28 kcal Total: -71.72 -0.37 -72.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490668498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.239 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds