Wall clock time and date at job start Tue Mar 31 2020 20:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99685 * 2 1 4 4 H 1.48504 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47061 * 299.99966 * 3 2 1 6 6 H 1.48503 * 109.47293 * 59.99950 * 3 2 1 7 7 C 1.37877 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99816 * 186.64023 * 7 2 1 9 9 C 1.50698 * 120.00119 * 6.62912 * 7 2 1 10 10 C 1.53002 * 112.99739 * 65.40072 * 9 7 2 11 11 O 1.45200 * 109.47099 * 53.51527 * 10 9 7 12 12 C 1.34232 * 116.99856 * 179.97438 * 11 10 9 13 13 O 1.20820 * 120.00029 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.99917 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.47395 * 180.02562 * 14 12 11 16 16 C 1.52991 * 109.47307 * 180.02562 * 15 14 12 17 17 O 1.42905 * 109.47168 * 180.02562 * 16 15 14 18 18 C 1.35945 * 117.00151 * 180.02562 * 17 16 15 19 19 C 1.38709 * 120.02935 * 359.71337 * 18 17 16 20 20 C 1.38149 * 119.96572 * 179.78949 * 19 18 17 21 21 C 1.38447 * 120.03333 * 0.49529 * 20 19 18 22 22 F 1.35106 * 119.97090 * 179.71627 * 21 20 19 23 23 C 1.38458 * 120.05956 * 359.73943 * 21 20 19 24 24 C 1.38143 * 120.02734 * 0.02562 * 23 21 20 25 25 C 1.54035 * 113.92780 * 197.33142 * 9 7 2 26 26 O 1.44175 * 85.51785 * 91.65896 * 25 9 7 27 27 C 1.44186 * 93.34054 * 24.19612 * 26 25 9 28 28 H 0.97002 * 120.00270 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46916 * 293.51980 * 10 9 7 30 30 H 1.08996 * 109.47344 * 173.52146 * 10 9 7 31 31 H 1.08998 * 109.47830 * 300.00865 * 14 12 11 32 32 H 1.09007 * 109.46760 * 60.00478 * 14 12 11 33 33 H 1.08998 * 109.47107 * 300.01025 * 15 14 12 34 34 H 1.09005 * 109.46327 * 60.00061 * 15 14 12 35 35 H 1.09005 * 109.47420 * 300.00106 * 16 15 14 36 36 H 1.08996 * 109.47676 * 60.00328 * 16 15 14 37 37 H 1.07997 * 120.01627 * 0.02562 * 19 18 17 38 38 H 1.08003 * 119.97946 * 180.20971 * 20 19 18 39 39 H 1.08004 * 119.98490 * 180.02562 * 23 21 20 40 40 H 1.08009 * 120.01288 * 179.97438 * 24 23 21 41 41 H 1.08997 * 113.86551 * 205.80903 * 25 9 7 42 42 H 1.09001 * 113.86024 * 337.51532 * 25 9 7 43 43 H 1.09001 * 113.86409 * 221.66223 * 27 26 25 44 44 H 1.08993 * 113.86763 * 89.94682 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0792 -1.1972 0.1076 9 6 1.2587 -2.4947 -0.1518 10 6 0.5848 -2.6421 -1.5175 11 8 1.5668 -2.4341 -2.5667 12 6 1.1343 -2.5301 -3.8338 13 8 -0.0264 -2.7791 -4.0587 14 6 2.0964 -2.3272 -4.9757 15 6 1.3536 -2.4891 -6.3035 16 6 2.3305 -2.2837 -7.4628 17 8 1.6366 -2.4344 -8.7029 18 6 2.3653 -2.2824 -9.8404 19 6 3.7187 -1.9884 -9.7637 20 6 4.4590 -1.8386 -10.9205 21 6 3.8485 -1.9715 -12.1559 22 9 4.5724 -1.8190 -13.2864 23 6 2.4965 -2.2601 -12.2340 24 6 1.7550 -2.4153 -11.0788 25 6 2.0677 -3.7326 0.2794 26 8 1.4697 -3.5316 1.5758 27 6 0.3352 -2.8240 1.0363 28 1 -0.4851 0.8400 0.0004 29 1 -0.2101 -1.9022 -1.6121 30 1 0.1625 -3.6427 -1.6082 31 1 2.5229 -1.3258 -4.9181 32 1 2.8952 -3.0663 -4.9134 33 1 0.9268 -3.4904 -6.3613 34 1 0.5550 -1.7497 -6.3654 35 1 2.7576 -1.2825 -7.4051 36 1 3.1288 -3.0233 -7.4007 37 1 4.1944 -1.8805 -8.8001 38 1 5.5135 -1.6130 -10.8609 39 1 2.0216 -2.3639 -13.1984 40 1 0.7003 -2.6400 -11.1400 41 1 1.7573 -4.6551 -0.2112 42 1 3.1470 -3.5814 0.2634 43 1 0.0405 -1.9523 1.6206 44 1 -0.5042 -3.4691 0.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519605752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:44 Heat of formation + Delta-G solvation = -163.425674 kcal Electronic energy + Delta-G solvation = -27897.019853 eV Core-core repulsion = 23502.696253 eV Total energy + Delta-G solvation = -4394.323600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.14570 -40.48427 -39.92255 -39.10636 -37.70860 -35.89609 -33.97703 -32.94796 -31.65144 -30.15825 -29.75410 -27.71257 -25.46468 -25.28063 -24.39688 -23.65984 -22.72028 -21.78443 -20.11742 -19.05349 -18.63632 -17.74050 -17.22212 -16.77382 -16.75833 -16.45189 -15.96985 -15.75520 -15.65040 -15.10243 -15.00926 -14.65036 -14.42426 -14.32923 -14.12105 -14.03828 -13.91214 -13.43447 -12.96072 -12.84797 -12.45968 -12.39107 -12.14378 -11.97619 -11.78066 -11.55914 -11.44126 -11.11124 -11.05335 -10.82345 -10.79856 -10.51542 -10.20215 -9.98286 -9.60926 -9.59017 -9.44124 -9.10515 -8.81186 -8.47230 -8.34340 -6.22327 -4.24937 0.74079 0.82943 2.65931 2.72995 3.17388 3.20501 3.29448 3.33149 3.43890 3.93731 4.26122 4.29214 4.36276 4.62662 4.63989 4.71404 4.78411 4.85213 4.90721 5.03052 5.13199 5.15463 5.20844 5.36107 5.45751 5.52456 5.71323 5.74184 5.82610 5.85355 5.89653 6.00421 6.04774 6.14462 6.26842 6.31273 6.34164 6.51242 6.92409 7.00370 7.09069 7.24301 7.30266 7.34109 7.74179 8.12961 8.40245 8.72430 9.38779 10.86135 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.001892 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.408152 B =14798.270195 C =15516.317904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.484 4.484 8 H 0.067 0.933 9 C 0.031 3.969 10 C 0.083 3.917 11 O -0.330 6.330 12 C 0.453 3.547 13 O -0.524 6.524 14 C -0.112 4.112 15 C -0.108 4.108 16 C 0.059 3.941 17 O -0.308 6.308 18 C 0.127 3.873 19 C -0.182 4.182 20 C -0.111 4.111 21 C 0.054 3.946 22 F -0.143 7.143 23 C -0.113 4.113 24 C -0.126 4.126 25 C 0.028 3.972 26 O -0.388 6.388 27 C 0.050 3.950 28 H 0.264 0.736 29 H 0.085 0.915 30 H 0.037 0.963 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.100 0.900 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 -4.315 -20.492 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.522 4.522 8 H 0.085 0.915 9 C 0.031 3.969 10 C 0.010 3.990 11 O -0.244 6.244 12 C 0.296 3.704 13 O -0.414 6.414 14 C -0.150 4.150 15 C -0.146 4.146 16 C -0.016 4.016 17 O -0.222 6.222 18 C 0.081 3.919 19 C -0.201 4.201 20 C -0.130 4.130 21 C 0.034 3.966 22 F -0.122 7.122 23 C -0.132 4.132 24 C -0.144 4.144 25 C -0.049 4.049 26 O -0.307 6.307 27 C -0.027 4.027 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.118 0.882 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.443 -4.366 -20.228 21.398 hybrid contribution 0.494 1.036 -0.301 1.187 sum 5.937 -3.330 -20.529 21.628 Atomic orbital electron populations 1.69898 1.05940 1.27150 1.49636 1.24967 0.94939 0.99369 0.94433 0.86426 0.80232 0.83129 0.77633 1.19517 1.20928 1.20945 1.20580 0.93449 0.88269 1.49866 0.91530 1.21136 0.92682 0.94662 0.88468 1.23449 0.90962 0.98821 0.85806 1.86530 1.43458 1.80115 1.14333 1.23334 0.88165 0.73639 0.85286 1.90624 1.19671 1.45223 1.85894 1.21139 0.97950 1.05767 0.90116 1.21288 0.98080 1.05277 0.89913 1.22895 0.95601 1.01647 0.81488 1.86105 1.37705 1.85804 1.12553 1.19060 0.90169 0.95693 0.86991 1.21194 0.93276 1.06110 0.99535 1.20959 1.00955 1.00516 0.90595 1.17589 0.90106 1.06605 0.82272 1.91493 1.77619 1.93637 1.49419 1.20966 0.92180 1.00523 0.99500 1.20324 1.01137 1.04192 0.88766 1.24091 0.99226 0.97336 0.84230 1.89496 1.37275 1.77740 1.26219 1.23926 0.88512 0.94298 0.95953 0.92591 0.89696 0.94459 0.87512 0.87733 0.89768 0.89656 0.91381 0.91432 0.84205 0.84426 0.84076 0.84015 0.92884 0.90377 0.88191 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.64 11.31 55.43 0.63 -23.01 16 2 C 0.07 1.69 5.25 -17.82 -0.09 1.60 16 3 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.48 -12.45 7.92 -34.44 -0.27 -12.73 16 8 H 0.07 1.72 7.82 -52.48 -0.41 1.31 16 9 C 0.03 0.73 0.62 -154.58 -0.10 0.63 16 10 C 0.08 1.87 4.67 37.16 0.17 2.04 16 11 O -0.33 -6.82 9.82 -39.26 -0.39 -7.21 16 12 C 0.45 8.05 7.96 36.00 0.29 8.33 16 13 O -0.52 -10.69 15.73 -18.75 -0.29 -10.98 16 14 C -0.11 -1.30 5.81 -27.88 -0.16 -1.47 16 15 C -0.11 -1.17 4.87 -26.73 -0.13 -1.30 16 16 C 0.06 0.50 4.74 37.15 0.18 0.67 16 17 O -0.31 -3.18 10.14 -19.57 -0.20 -3.38 16 18 C 0.13 1.18 6.69 -39.24 -0.26 0.92 16 19 C -0.18 -1.47 9.04 -39.44 -0.36 -1.82 16 20 C -0.11 -0.88 10.02 -39.54 -0.40 -1.28 16 21 C 0.05 0.47 7.30 -39.42 -0.29 0.18 16 22 F -0.14 -1.37 17.27 2.25 0.04 -1.33 16 23 C -0.11 -0.88 10.02 -39.53 -0.40 -1.27 16 24 C -0.13 -1.05 9.98 -39.44 -0.39 -1.44 16 25 C 0.03 0.59 8.35 37.61 0.31 0.91 16 26 O -0.39 -9.08 12.40 -35.23 -0.44 -9.52 16 27 C 0.05 1.16 7.91 37.61 0.30 1.46 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.08 2.14 7.21 -51.93 -0.37 1.76 16 30 H 0.04 0.78 8.04 -51.93 -0.42 0.36 16 31 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.08 1.05 8.10 -51.93 -0.42 0.62 16 35 H 0.07 0.49 7.65 -51.93 -0.40 0.10 16 36 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 37 H 0.14 0.87 6.30 -52.49 -0.33 0.54 16 38 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 41 H 0.05 0.99 8.03 -51.93 -0.42 0.57 16 42 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 43 H 0.10 2.50 7.36 -51.93 -0.38 2.12 16 44 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 379.92 15.07 5.73 5.73 Total: -1.00 -30.29 379.92 -7.61 -37.90 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -6.06 Total: 1.07 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -1.60 Total: -4.55 kcal Atomic # 7 Polarization: -23.64 SS G_CDS: 0.63 Total: -23.01 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.32 Total: -31.08 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.29 -7.61 -37.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519605752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.530 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds