Wall clock time and date at job start Tue Mar 31 2020 20:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99685 * 2 1 4 4 H 1.48504 * 109.47080 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47061 * 299.99966 * 3 2 1 6 6 H 1.48503 * 109.47293 * 59.99950 * 3 2 1 7 7 C 1.37877 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99816 * 186.64023 * 7 2 1 9 9 C 1.50698 * 120.00119 * 6.62912 * 7 2 1 10 10 C 1.53002 * 112.99739 * 65.40072 * 9 7 2 11 11 O 1.45200 * 109.47099 * 53.51527 * 10 9 7 12 12 C 1.34232 * 116.99856 * 179.97438 * 11 10 9 13 13 O 1.20820 * 120.00029 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.99917 * 180.02562 * 12 11 10 15 15 C 1.53002 * 109.47395 * 180.02562 * 14 12 11 16 16 C 1.52991 * 109.47307 * 180.02562 * 15 14 12 17 17 O 1.42905 * 109.47168 * 180.02562 * 16 15 14 18 18 C 1.35945 * 117.00151 * 180.02562 * 17 16 15 19 19 C 1.38709 * 120.02935 * 359.71337 * 18 17 16 20 20 C 1.38149 * 119.96572 * 179.78949 * 19 18 17 21 21 C 1.38447 * 120.03333 * 0.49529 * 20 19 18 22 22 F 1.35106 * 119.97090 * 179.71627 * 21 20 19 23 23 C 1.38458 * 120.05956 * 359.73943 * 21 20 19 24 24 C 1.38143 * 120.02734 * 0.02562 * 23 21 20 25 25 C 1.54035 * 113.92780 * 197.33142 * 9 7 2 26 26 O 1.44175 * 85.51785 * 91.65896 * 25 9 7 27 27 C 1.44186 * 93.34054 * 24.19612 * 26 25 9 28 28 H 0.97002 * 120.00270 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46916 * 293.51980 * 10 9 7 30 30 H 1.08996 * 109.47344 * 173.52146 * 10 9 7 31 31 H 1.08998 * 109.47830 * 300.00865 * 14 12 11 32 32 H 1.09007 * 109.46760 * 60.00478 * 14 12 11 33 33 H 1.08998 * 109.47107 * 300.01025 * 15 14 12 34 34 H 1.09005 * 109.46327 * 60.00061 * 15 14 12 35 35 H 1.09005 * 109.47420 * 300.00106 * 16 15 14 36 36 H 1.08996 * 109.47676 * 60.00328 * 16 15 14 37 37 H 1.07997 * 120.01627 * 0.02562 * 19 18 17 38 38 H 1.08003 * 119.97946 * 180.20971 * 20 19 18 39 39 H 1.08004 * 119.98490 * 180.02562 * 23 21 20 40 40 H 1.08009 * 120.01288 * 179.97438 * 24 23 21 41 41 H 1.08997 * 113.86551 * 205.80903 * 25 9 7 42 42 H 1.09001 * 113.86024 * 337.51532 * 25 9 7 43 43 H 1.09001 * 113.86409 * 221.66223 * 27 26 25 44 44 H 1.08993 * 113.86763 * 89.94682 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0792 -1.1972 0.1076 9 6 1.2587 -2.4947 -0.1518 10 6 0.5848 -2.6421 -1.5175 11 8 1.5668 -2.4341 -2.5667 12 6 1.1343 -2.5301 -3.8338 13 8 -0.0264 -2.7791 -4.0587 14 6 2.0964 -2.3272 -4.9757 15 6 1.3536 -2.4891 -6.3035 16 6 2.3305 -2.2837 -7.4628 17 8 1.6366 -2.4344 -8.7029 18 6 2.3653 -2.2824 -9.8404 19 6 3.7187 -1.9884 -9.7637 20 6 4.4590 -1.8386 -10.9205 21 6 3.8485 -1.9715 -12.1559 22 9 4.5724 -1.8190 -13.2864 23 6 2.4965 -2.2601 -12.2340 24 6 1.7550 -2.4153 -11.0788 25 6 2.0677 -3.7326 0.2794 26 8 1.4697 -3.5316 1.5758 27 6 0.3352 -2.8240 1.0363 28 1 -0.4851 0.8400 0.0004 29 1 -0.2101 -1.9022 -1.6121 30 1 0.1625 -3.6427 -1.6082 31 1 2.5229 -1.3258 -4.9181 32 1 2.8952 -3.0663 -4.9134 33 1 0.9268 -3.4904 -6.3613 34 1 0.5550 -1.7497 -6.3654 35 1 2.7576 -1.2825 -7.4051 36 1 3.1288 -3.0233 -7.4007 37 1 4.1944 -1.8805 -8.8001 38 1 5.5135 -1.6130 -10.8609 39 1 2.0216 -2.3639 -13.1984 40 1 0.7003 -2.6400 -11.1400 41 1 1.7573 -4.6551 -0.2112 42 1 3.1470 -3.5814 0.2634 43 1 0.0405 -1.9523 1.6206 44 1 -0.5042 -3.4691 0.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519605752.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:44 Heat of formation + Delta-G solvation = -179.718406 kcal Electronic energy + Delta-G solvation = -27897.726359 eV Core-core repulsion = 23502.696253 eV Total energy + Delta-G solvation = -4395.030106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.81991 -41.54147 -41.10127 -40.76593 -38.37776 -37.42111 -34.95792 -34.84665 -32.24362 -31.87558 -30.50914 -28.67400 -27.25231 -27.06213 -25.95567 -24.50571 -23.46389 -22.57702 -21.38640 -20.86056 -19.31664 -18.62977 -18.41189 -18.16695 -17.74140 -17.54076 -17.23385 -17.13162 -16.77510 -16.48714 -16.20294 -16.15027 -15.83416 -15.62974 -15.18749 -15.09542 -14.56842 -14.34233 -14.09562 -13.90823 -13.75793 -13.61617 -13.40771 -13.18161 -13.14613 -12.87044 -12.60207 -12.45585 -12.33506 -12.24895 -11.83541 -11.74180 -11.73297 -11.53092 -11.25549 -11.25096 -10.89547 -10.70177 -10.19548 -10.18499 -9.11653 -8.17802 -6.25702 0.16483 0.19670 1.32834 1.41166 1.45108 1.55329 1.75386 2.31742 2.42206 2.56901 3.01793 3.23582 3.33156 3.61369 3.72223 3.81500 3.90194 3.96270 4.03788 4.13740 4.26271 4.28831 4.35632 4.41116 4.41265 4.46531 4.50469 4.58869 4.61960 4.65785 4.79885 4.91359 5.00702 5.12815 5.14787 5.15954 5.16888 5.23727 5.25167 5.48184 5.52246 5.70813 5.74106 5.78394 6.24078 6.37430 6.73510 6.91586 7.40209 8.89410 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017724 B = 0.001892 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.408152 B =14798.270195 C =15516.317904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.953 3.047 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.496 4.496 8 H 0.061 0.939 9 C 0.015 3.985 10 C 0.095 3.905 11 O -0.341 6.341 12 C 0.445 3.555 13 O -0.556 6.556 14 C -0.100 4.100 15 C -0.102 4.102 16 C 0.060 3.940 17 O -0.328 6.328 18 C 0.111 3.889 19 C -0.182 4.182 20 C -0.113 4.113 21 C 0.036 3.964 22 F -0.151 7.151 23 C -0.113 4.113 24 C -0.135 4.135 25 C 0.038 3.962 26 O -0.404 6.404 27 C 0.053 3.947 28 H 0.263 0.737 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.017 -4.571 -21.608 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.779 3.221 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.212 1.212 7 C -0.533 4.533 8 H 0.079 0.921 9 C 0.014 3.986 10 C 0.021 3.979 11 O -0.256 6.256 12 C 0.290 3.710 13 O -0.448 6.448 14 C -0.137 4.137 15 C -0.140 4.140 16 C -0.014 4.014 17 O -0.242 6.242 18 C 0.065 3.935 19 C -0.201 4.201 20 C -0.132 4.132 21 C 0.017 3.983 22 F -0.130 7.130 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.038 4.038 26 O -0.323 6.323 27 C -0.025 4.025 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.145 0.855 32 H 0.158 0.842 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.178 0.822 38 H 0.173 0.827 39 H 0.176 0.824 40 H 0.167 0.833 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.432 -4.630 -21.356 23.082 hybrid contribution -0.146 1.079 0.009 1.089 sum 7.287 -3.551 -21.347 22.835 Atomic orbital electron populations 1.70006 1.07021 1.27538 1.50494 1.25630 0.95614 1.02161 0.94377 0.85572 0.79490 0.79693 0.77363 1.18678 1.20691 1.21173 1.20803 0.93338 0.89558 1.49617 0.92098 1.21207 0.93311 0.95081 0.88978 1.23068 0.90340 0.98222 0.86285 1.86530 1.43013 1.80664 1.15347 1.24575 0.88911 0.72150 0.85338 1.90610 1.21529 1.46669 1.86037 1.21283 0.97122 1.07961 0.87376 1.21178 0.98150 1.03927 0.90739 1.22915 0.95031 1.03457 0.80017 1.86061 1.38700 1.86201 1.13258 1.19279 0.90851 0.96482 0.86850 1.21411 0.92755 1.05447 1.00476 1.21203 1.01911 0.99876 0.90219 1.17858 0.90595 1.07430 0.82453 1.91472 1.77818 1.93797 1.49872 1.21163 0.91971 0.99797 1.00187 1.20517 1.01727 1.04301 0.88831 1.24198 0.99468 0.97340 0.82808 1.89467 1.37498 1.77764 1.27601 1.23833 0.89193 0.93932 0.95493 0.92833 0.93187 0.93290 0.85523 0.84162 0.90901 0.91843 0.89697 0.88996 0.82165 0.82675 0.82366 0.83264 0.90011 0.89475 0.90783 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.35 11.31 21.45 0.24 -49.11 16 2 C 0.02 1.14 5.25 84.65 0.44 1.59 16 3 Si 0.95 41.44 29.54 68.60 2.03 43.47 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.50 -25.39 7.92 25.60 0.20 -25.19 16 8 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 9 C 0.01 0.69 0.62 -52.23 -0.03 0.66 16 10 C 0.10 4.27 4.67 71.98 0.34 4.60 16 11 O -0.34 -13.78 9.82 -51.44 -0.51 -14.29 16 12 C 0.44 15.39 7.96 71.23 0.57 15.96 16 13 O -0.56 -22.84 15.73 21.98 0.35 -22.49 16 14 C -0.10 -2.07 5.81 29.85 0.17 -1.90 16 15 C -0.10 -2.04 4.87 30.59 0.15 -1.89 16 16 C 0.06 0.86 4.74 71.98 0.34 1.20 16 17 O -0.33 -6.25 10.14 -92.93 -0.94 -7.20 16 18 C 0.11 1.89 6.69 22.49 0.15 2.04 16 19 C -0.18 -2.49 9.04 22.36 0.20 -2.28 16 20 C -0.11 -1.57 10.02 22.30 0.22 -1.34 16 21 C 0.04 0.58 7.30 22.37 0.16 0.74 16 22 F -0.15 -2.73 17.27 44.97 0.78 -1.96 16 23 C -0.11 -1.61 10.02 22.30 0.22 -1.39 16 24 C -0.14 -2.11 9.98 22.36 0.22 -1.88 16 25 C 0.04 1.54 8.35 72.27 0.60 2.14 16 26 O -0.40 -18.52 12.40 -148.98 -1.85 -20.37 16 27 C 0.05 2.44 7.91 72.28 0.57 3.01 16 28 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 29 H 0.05 2.58 7.21 -2.38 -0.02 2.56 16 30 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 31 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.14 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 34 H 0.06 1.54 8.10 -2.38 -0.02 1.52 16 35 H 0.08 0.94 7.65 -2.38 -0.02 0.92 16 36 H 0.09 0.88 7.67 -2.39 -0.02 0.86 16 37 H 0.16 1.41 6.30 -2.91 -0.02 1.39 16 38 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.08 2.82 8.03 -2.39 -0.02 2.80 16 42 H 0.09 3.33 8.09 -2.39 -0.02 3.31 16 43 H 0.07 3.80 7.36 -2.39 -0.02 3.78 16 44 H 0.07 2.78 8.10 -2.39 -0.02 2.77 16 Total: -1.00 -66.24 379.92 5.65 -60.59 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 1.01 Total: 15.29 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 4.54 Total: -3.94 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.24 Total: -49.11 kcal Atomic # 8 Polarization: -61.39 SS G_CDS: -2.95 Total: -64.34 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -66.24 5.65 -60.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519605752.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.126 kcal (2) G-P(sol) polarization free energy of solvation -66.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds