Wall clock time and date at job start Tue Mar 31 2020 21:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40173 * 119.82005 * 2 1 4 4 C 1.35681 * 119.27266 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.48734 * 179.97438 * 4 3 2 6 6 N 1.36175 * 119.02598 * 359.97438 * 4 3 2 7 7 N 1.40100 * 133.21976 * 180.02562 * 6 4 3 8 8 C 1.32013 * 106.92089 * 179.97438 * 7 6 4 9 9 C 1.48084 * 125.32705 * 179.97438 * 8 7 6 10 10 O 1.21522 * 119.99605 * 0.04203 * 9 8 7 11 11 N 1.34771 * 119.99921 * 180.02562 * 9 8 7 12 12 C 1.39171 * 119.99904 * 174.84686 * 11 9 8 13 13 C 1.39689 * 119.57834 * 185.31348 * 12 11 9 14 14 C 1.38647 * 119.49651 * 179.97438 * 13 12 11 15 15 C 1.38352 * 118.67219 * 0.02562 * 14 13 12 16 16 C 1.40575 * 119.13110 * 0.02562 * 15 14 13 17 17 C 1.41342 * 119.78583 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99760 * 359.97438 * 17 16 15 19 19 C 1.40024 * 120.00200 * 179.97438 * 17 16 15 20 20 N 1.30753 * 119.99651 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46808 * 90.00339 * 21 19 17 23 23 H 1.48504 * 109.47403 * 209.99921 * 21 19 17 24 24 H 1.48493 * 109.47587 * 330.00269 * 21 19 17 25 25 N 1.31919 * 119.57702 * 5.04166 * 12 11 9 26 26 N 1.33474 * 109.34436 * 0.02562 * 8 7 6 27 27 C 1.32492 * 109.75889 * 0.02562 * 26 8 7 28 28 N 1.31252 * 119.82031 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47269 * 270.02650 * 1 2 3 30 30 H 1.08999 * 109.47272 * 30.02592 * 1 2 3 31 31 H 1.09004 * 109.47149 * 150.02165 * 1 2 3 32 32 H 1.07998 * 120.36502 * 359.95237 * 3 2 1 33 33 H 1.09004 * 109.47090 * 89.99713 * 5 4 3 34 34 H 1.08998 * 109.47268 * 209.99540 * 5 4 3 35 35 H 1.08996 * 109.47351 * 329.99971 * 5 4 3 36 36 H 0.96996 * 120.00325 * 354.84277 * 11 9 8 37 37 H 1.08001 * 120.25471 * 359.95863 * 13 12 11 38 38 H 1.08008 * 120.66449 * 180.02562 * 14 13 12 39 39 H 1.08002 * 120.43145 * 179.97438 * 15 14 13 40 40 H 0.96998 * 119.99410 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2041 1.2161 0.0000 4 6 3.5608 1.2032 0.0005 5 6 4.3377 2.4944 0.0000 6 7 4.2101 0.0062 0.0016 7 7 5.5650 -0.3503 0.0028 8 6 5.6152 -1.6695 0.0040 9 6 6.8551 -2.4792 0.0050 10 8 7.9392 -1.9302 0.0055 11 7 6.7811 -3.8249 0.0057 12 6 7.9415 -4.5856 -0.1016 13 6 7.8474 -5.9749 -0.2123 14 6 9.0045 -6.7312 -0.3197 15 6 10.2256 -6.0807 -0.3132 16 6 10.2542 -4.6800 -0.1980 17 6 11.4940 -4.0013 -0.1904 18 1 12.4153 -4.5588 -0.2726 19 6 11.5277 -2.6061 -0.0764 20 7 10.4123 -1.9311 0.0226 21 14 13.1662 -1.7092 -0.0657 22 1 13.5463 -1.3562 -1.4573 23 1 13.0472 -0.4702 0.7442 24 1 14.2078 -2.5880 0.5241 25 7 9.1160 -3.9850 -0.1030 26 7 4.3736 -2.1592 0.0030 27 6 3.4994 -1.1636 0.0007 28 7 2.1597 -1.1387 0.0005 29 1 -0.3633 0.0005 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6671 2.1532 -0.0008 33 1 4.5246 2.8064 1.0275 34 1 5.2879 2.3465 -0.5133 35 1 3.7627 3.2642 -0.5146 36 1 5.9191 -4.2632 0.0810 37 1 6.8807 -6.4565 -0.2140 38 1 8.9537 -7.8065 -0.4066 39 1 11.1448 -6.6419 -0.3948 40 1 10.4357 -0.9647 0.1020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533424166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:49 Heat of formation + Delta-G solvation = 165.121884 kcal Electronic energy + Delta-G solvation = -27843.582402 eV Core-core repulsion = 23855.320077 eV Total energy + Delta-G solvation = -3988.262325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.02802 -39.69319 -38.84136 -37.34501 -35.65401 -34.22319 -33.06277 -32.60611 -31.55126 -30.32070 -29.38392 -29.07086 -28.18927 -25.84062 -24.91425 -23.18437 -22.23223 -21.56775 -21.04821 -19.57227 -18.61182 -18.21579 -17.65853 -16.91725 -16.47379 -16.07845 -15.24695 -14.68233 -14.63858 -14.50059 -14.41768 -14.14198 -13.78543 -13.69595 -13.57299 -13.39504 -13.01049 -12.82226 -12.77372 -12.59298 -12.30550 -11.97440 -11.94018 -11.60339 -11.14557 -10.94127 -10.63574 -10.46955 -10.34161 -10.25092 -9.94818 -9.81232 -9.65578 -9.44842 -9.02821 -8.91755 -7.97445 -7.29979 -6.99703 -6.14642 -4.38960 0.11607 0.45565 1.61275 1.92853 2.82663 2.92262 3.03829 3.17511 3.18877 3.21386 3.29243 3.33471 3.70548 3.98490 4.03166 4.07846 4.30512 4.62141 4.75207 4.84311 4.88636 4.93875 4.97626 5.05958 5.15701 5.28470 5.51256 5.70974 5.87830 5.96784 6.02723 6.04368 6.14825 6.50202 6.64826 6.82836 6.85329 7.21618 7.22855 7.50332 7.58317 7.71334 7.82192 8.02624 8.17803 8.42656 8.69766 9.00699 9.08701 10.21220 10.48891 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.003066 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.400202 B = 9130.985103 C =10929.628300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.231 3.769 3 C -0.232 4.232 4 C 0.210 3.790 5 C -0.124 4.124 6 N -0.334 5.334 7 N -0.270 5.270 8 C 0.254 3.746 9 C 0.564 3.436 10 O -0.369 6.369 11 N -0.640 5.640 12 C 0.372 3.628 13 C -0.348 4.348 14 C -0.036 4.036 15 C -0.301 4.301 16 C 0.271 3.729 17 C -0.423 4.423 18 H 0.084 0.916 19 C 0.058 3.942 20 N -0.661 5.661 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.263 1.263 25 N -0.477 5.477 26 N -0.504 5.504 27 C 0.447 3.553 28 N -0.460 5.460 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.172 0.828 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.412 0.588 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.713 11.338 0.338 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.065 3.935 3 C -0.257 4.257 4 C 0.092 3.908 5 C -0.181 4.181 6 N -0.116 5.116 7 N -0.103 5.103 8 C -0.030 4.030 9 C 0.339 3.661 10 O -0.227 6.227 11 N -0.288 5.288 12 C 0.134 3.866 13 C -0.373 4.373 14 C -0.060 4.060 15 C -0.324 4.324 16 C 0.146 3.854 17 C -0.454 4.454 18 H 0.102 0.898 19 C -0.171 4.171 20 N -0.280 5.280 21 Si 0.723 3.277 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.187 1.187 25 N -0.196 5.196 26 N -0.239 5.239 27 C 0.086 3.914 28 N -0.177 5.177 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.190 0.810 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.248 0.752 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.422 12.025 0.414 22.003 hybrid contribution 0.182 0.087 -0.022 0.203 sum -18.240 12.112 0.393 21.899 Atomic orbital electron populations 1.20869 0.86246 1.04862 1.04439 1.22029 0.98040 0.86879 0.86521 1.21583 0.91350 1.01348 1.11388 1.20901 0.92044 0.86624 0.91238 1.21091 1.01299 0.90623 1.05090 1.49102 1.07778 1.07830 1.46849 1.78960 0.88267 1.13591 1.29484 1.25035 0.93308 0.89695 0.95000 1.16749 0.84726 0.82664 0.81961 1.91311 1.23434 1.69536 1.38372 1.42949 1.09293 1.04605 1.71950 1.18483 0.87021 0.86705 0.94407 1.20482 0.97793 0.92199 1.26872 1.20576 0.92471 0.97219 0.95717 1.21633 0.96268 0.95967 1.18546 1.18357 0.91072 0.87930 0.88001 1.19587 0.92258 0.91544 1.42010 0.89829 1.26182 0.97338 0.98438 0.95142 1.70277 1.25849 1.07898 1.23954 0.86482 0.82998 0.79374 0.78887 1.19652 1.20324 1.18740 1.68630 0.94821 1.35699 1.20494 1.70895 0.97893 1.26879 1.28237 1.22679 0.90068 0.81905 0.96717 1.67860 1.01784 1.28875 1.19150 0.88777 0.89276 0.89190 0.81035 0.88425 0.88819 0.88431 0.75198 0.88648 0.88359 0.88391 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.42 10.19 36.01 0.37 -0.06 16 2 C 0.23 1.98 6.83 -82.11 -0.56 1.42 16 3 C -0.23 -1.58 9.39 -39.77 -0.37 -1.96 16 4 C 0.21 2.13 6.86 -81.58 -0.56 1.57 16 5 C -0.12 -0.86 10.13 36.00 0.36 -0.50 16 6 N -0.33 -5.15 3.91 -10.07 -0.04 -5.19 16 7 N -0.27 -5.18 12.67 32.02 0.41 -4.78 16 8 C 0.25 5.20 7.92 -156.78 -1.24 3.96 16 9 C 0.56 13.16 7.80 -12.22 -0.10 13.07 16 10 O -0.37 -9.98 12.83 5.35 0.07 -9.91 16 11 N -0.64 -14.27 5.38 -12.20 -0.07 -14.34 16 12 C 0.37 9.50 7.43 -155.05 -1.15 8.35 16 13 C -0.35 -8.08 9.95 -38.89 -0.39 -8.47 16 14 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 15 C -0.30 -7.65 9.83 -38.66 -0.38 -8.03 16 16 C 0.27 7.73 6.55 -85.00 -0.56 7.18 16 17 C -0.42 -11.75 9.14 -37.73 -0.34 -12.10 16 18 H 0.08 2.16 7.85 -52.48 -0.41 1.75 16 19 C 0.06 1.55 5.50 -17.34 -0.10 1.45 16 20 N -0.66 -18.70 8.98 55.55 0.50 -18.20 16 21 Si 0.90 19.54 29.56 -169.99 -5.02 14.52 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 25 N -0.48 -13.76 5.73 -10.27 -0.06 -13.81 16 26 N -0.50 -9.58 10.89 -12.24 -0.13 -9.71 16 27 C 0.45 7.43 8.99 -323.04 -2.90 4.53 16 28 N -0.46 -6.21 10.40 -10.01 -0.10 -6.31 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.11 8.09 -51.93 -0.42 -0.31 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.17 0.36 8.06 -52.49 -0.42 -0.06 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.33 8.09 -51.93 -0.42 -0.09 16 36 H 0.41 7.88 8.37 -40.82 -0.34 7.54 16 37 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 39 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 40 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -36.82 353.80 -11.55 -48.37 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.11 Total: 4.86 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: -8.32 Total: 9.18 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: 0.50 Total: -72.35 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -36.82 -11.55 -48.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533424166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.489 kcal (2) G-P(sol) polarization free energy of solvation -36.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds