Wall clock time and date at job start Tue Mar 31 2020 20:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48495 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47114 * 300.00247 * 3 2 1 6 6 H 1.48505 * 109.46890 * 59.99856 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.08999 * 110.27473 * 34.29362 * 14 13 11 16 16 C 1.54593 * 110.30858 * 272.20557 * 14 13 11 17 17 C 1.55098 * 102.84953 * 219.18494 * 16 14 13 18 18 N 1.48530 * 103.28211 * 37.30512 * 17 16 14 19 19 C 1.46902 * 111.00341 * 200.33601 * 18 17 16 20 20 C 1.53005 * 109.46928 * 287.39625 * 19 18 17 21 21 O 1.42902 * 109.46802 * 64.99511 * 20 19 18 22 22 C 1.42907 * 113.99917 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47000 * 180.02562 * 22 21 20 24 24 F 1.39899 * 109.46886 * 299.99743 * 23 22 21 25 25 F 1.39895 * 109.47239 * 60.00170 * 23 22 21 26 26 C 1.47907 * 105.82305 * 320.84681 * 18 17 16 27 27 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 29 29 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 30 30 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 31 31 H 1.09000 * 110.72566 * 337.48803 * 16 14 13 32 32 H 1.09000 * 110.72353 * 100.76483 * 16 14 13 33 33 H 1.09001 * 110.59122 * 278.87666 * 17 16 14 34 34 H 1.09000 * 110.83232 * 155.84457 * 17 16 14 35 35 H 1.08999 * 109.46756 * 47.39488 * 19 18 17 36 36 H 1.09000 * 109.47686 * 167.39616 * 19 18 17 37 37 H 1.08996 * 109.46957 * 184.99541 * 20 19 18 38 38 H 1.09004 * 109.47220 * 304.99876 * 20 19 18 39 39 H 1.09005 * 109.46742 * 300.00120 * 22 21 20 40 40 H 1.08996 * 109.46879 * 60.00085 * 22 21 20 41 41 H 1.09002 * 109.46566 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.91905 * 265.98138 * 26 18 17 43 43 H 1.09002 * 110.08105 * 144.76717 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 2.3304 -7.7150 -0.0051 15 1 1.4070 -7.7720 -0.5815 16 6 2.0896 -8.1993 1.4431 17 6 2.5593 -9.6767 1.3954 18 7 3.7363 -9.6315 0.4906 19 6 4.0284 -10.9617 -0.0601 20 6 4.6269 -11.8468 1.0352 21 8 3.6516 -12.0661 2.0563 22 6 4.1117 -12.8850 3.1333 23 6 2.9912 -13.0520 4.1617 24 9 2.6208 -11.7966 4.6557 25 9 1.8868 -13.6584 3.5537 26 6 3.3824 -8.6791 -0.5843 27 1 -0.4850 0.8401 0.0004 28 1 3.1238 -3.7309 -0.8925 29 1 3.1252 -3.7317 0.8875 30 1 3.8009 -6.1834 -0.0040 31 1 2.6926 -7.6256 2.1470 32 1 1.0321 -8.1372 1.6998 33 1 1.7787 -10.3139 0.9797 34 1 2.8496 -10.0234 2.3872 35 1 3.1071 -11.4127 -0.4287 36 1 4.7402 -10.8673 -0.8802 37 1 4.9255 -12.8034 0.6065 38 1 5.4986 -11.3534 1.4652 39 1 4.3999 -13.8632 2.7484 40 1 4.9724 -12.4127 3.6067 41 1 3.3420 -13.6770 4.9829 42 1 2.9642 -9.2176 -1.4347 43 1 4.2655 -8.1213 -0.8958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567886269.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:44 Heat of formation + Delta-G solvation = -206.129175 kcal Electronic energy + Delta-G solvation = -26609.307635 eV Core-core repulsion = 22257.408670 eV Total energy + Delta-G solvation = -4351.898965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.80482 -47.87392 -41.06840 -39.76705 -38.56401 -35.55720 -34.58301 -33.09951 -31.15141 -30.71013 -29.36750 -28.10651 -27.57463 -23.88374 -23.59443 -22.39586 -21.85796 -21.56019 -19.84329 -18.74402 -18.38231 -18.01988 -17.65331 -17.55436 -17.09442 -16.97342 -16.87691 -16.39091 -16.21378 -15.88909 -15.49682 -15.01916 -14.79527 -14.71984 -14.54240 -14.33130 -14.25235 -13.99113 -13.83648 -13.57064 -13.21250 -13.15782 -13.03279 -12.90829 -12.70443 -12.67610 -12.56000 -12.25833 -11.95980 -11.86331 -11.70992 -11.68219 -11.15702 -10.94013 -10.62023 -10.26735 -10.11580 -9.44868 -8.66563 -8.34533 -6.12591 1.27207 1.41783 1.47338 1.58692 1.60969 2.25077 2.29248 2.48043 2.95520 2.99607 3.05006 3.32319 3.44428 3.51876 3.64439 3.72178 3.97017 4.02049 4.12913 4.18531 4.29414 4.31556 4.34068 4.38996 4.43684 4.49989 4.51609 4.60469 4.66837 4.69705 4.81119 4.92392 4.94414 5.08685 5.16373 5.42454 5.51778 5.81077 6.00541 6.14162 6.20416 6.51913 7.06774 7.25486 8.74973 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.001834 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.869591 B =15259.827226 C =15709.065769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.566 6.566 13 N -0.703 5.703 14 C 0.136 3.864 15 H 0.072 0.928 16 C -0.137 4.137 17 C 0.062 3.938 18 N -0.515 5.515 19 C 0.042 3.958 20 C 0.068 3.932 21 O -0.403 6.403 22 C 0.006 3.994 23 C 0.256 3.744 24 F -0.222 7.222 25 F -0.222 7.222 26 C 0.039 3.961 27 H 0.271 0.729 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.417 0.583 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.168 0.832 42 H 0.066 0.934 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.088 -31.507 4.206 36.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.279 4.279 11 C 0.321 3.679 12 O -0.444 6.444 13 N -0.357 5.357 14 C 0.030 3.970 15 H 0.090 0.910 16 C -0.176 4.176 17 C -0.066 4.066 18 N -0.240 5.240 19 C -0.086 4.086 20 C -0.008 4.008 21 O -0.323 6.323 22 C -0.071 4.071 23 C 0.203 3.797 24 F -0.204 7.204 25 F -0.204 7.204 26 C -0.089 4.089 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.127 0.873 30 H 0.255 0.745 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.131 0.869 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.185 0.815 42 H 0.084 0.916 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.230 -31.522 4.447 35.290 hybrid contribution 0.879 1.085 -0.369 1.444 sum 16.109 -30.437 4.078 34.678 Atomic orbital electron populations 1.70196 1.08001 1.28532 1.48114 1.26158 0.95999 1.03410 0.93784 0.84881 0.78618 0.76227 0.78055 1.17951 1.19916 1.19964 1.23239 0.95366 0.91936 1.58692 0.89845 1.85600 1.10672 0.99322 1.97044 1.23365 1.03494 0.94229 1.06843 1.20102 0.86262 0.86716 0.74850 1.90688 1.17477 1.86084 1.50167 1.45831 1.10196 1.04388 1.75258 1.21786 0.97583 0.80941 0.96693 0.90957 1.22958 1.00962 0.96979 0.96708 1.23068 0.90928 0.93897 0.98696 1.64841 1.35878 1.08263 1.14971 1.22482 1.01183 0.88099 0.96791 1.22662 0.91186 0.98857 0.88103 1.88001 1.40435 1.70720 1.33169 1.23835 0.96225 0.98175 0.88829 1.22758 0.82594 0.79357 0.95029 1.92981 1.92956 1.45524 1.88891 1.92965 1.58306 1.83356 1.85728 1.23070 0.98185 0.94007 0.93660 0.92015 0.87020 0.87292 0.74499 0.90821 0.92421 0.94435 0.89286 0.94214 0.86898 0.90407 0.91579 0.88021 0.88556 0.81535 0.91560 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.72 13.22 21.65 0.29 -56.43 16 2 C 0.01 0.64 5.49 84.86 0.47 1.10 16 3 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.54 -31.46 9.50 67.95 0.65 -30.81 16 8 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 9 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 10 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 11 C 0.53 20.31 7.85 87.66 0.69 21.00 16 12 O -0.57 -27.04 15.54 -3.02 -0.05 -27.09 16 13 N -0.70 -18.62 5.07 -438.38 -2.22 -20.84 16 14 C 0.14 3.36 3.31 45.87 0.15 3.51 16 15 H 0.07 2.14 7.60 -2.39 -0.02 2.12 16 16 C -0.14 -3.52 6.79 31.86 0.22 -3.30 16 17 C 0.06 1.34 5.33 86.71 0.46 1.80 16 18 N -0.51 -8.76 5.25 -882.66 -4.63 -13.40 16 19 C 0.04 0.51 5.27 86.30 0.45 0.97 16 20 C 0.07 0.66 6.25 71.98 0.45 1.11 16 21 O -0.40 -5.84 7.60 -148.98 -1.13 -6.97 16 22 C 0.01 0.05 6.16 71.98 0.44 0.49 16 23 C 0.26 2.60 5.63 71.98 0.41 3.00 16 24 F -0.22 -4.08 17.28 44.97 0.78 -3.30 16 25 F -0.22 -3.80 17.28 44.97 0.78 -3.03 16 26 C 0.04 0.66 6.43 86.45 0.56 1.22 16 27 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 28 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 29 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 30 H 0.42 8.14 8.33 -92.70 -0.77 7.37 16 31 H 0.07 1.96 8.06 -2.39 -0.02 1.94 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 0.86 7.81 -2.39 -0.02 0.85 16 34 H 0.09 2.07 6.79 -2.39 -0.02 2.06 16 35 H 0.04 0.56 7.83 -2.39 -0.02 0.54 16 36 H 0.11 0.86 8.08 -2.39 -0.02 0.84 16 37 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.10 0.24 8.14 -2.38 -0.02 0.22 16 40 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.17 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.07 1.01 7.77 -2.39 -0.02 0.99 16 43 H 0.10 1.44 7.63 -2.39 -0.02 1.42 16 Total: -1.00 -82.94 378.00 0.31 -82.64 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.25 Total: 16.83 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 5.38 Total: -4.64 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -6.57 Total: -90.67 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -1.18 Total: -34.07 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 1.55 Total: -6.33 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -82.94 0.31 -82.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567886269.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.493 kcal (2) G-P(sol) polarization free energy of solvation -82.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds