Wall clock time and date at job start Tue Mar 31 2020 20:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86808 * 120.00200 * 2 1 4 4 H 1.48492 * 109.47221 * 240.00060 * 3 2 1 5 5 H 1.48497 * 109.46918 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47057 * 120.00061 * 3 2 1 7 7 C 1.38796 * 120.00172 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00632 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99827 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46893 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00220 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99681 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99812 * 180.27588 * 13 11 10 15 15 C 1.50701 * 109.47064 * 179.72663 * 14 13 11 16 16 C 1.30999 * 120.00030 * 127.15620 * 15 14 13 17 17 C 1.50701 * 119.99915 * 7.56074 * 16 15 14 18 18 N 1.46898 * 109.47400 * 127.01062 * 17 16 15 19 19 C 1.46898 * 111.00057 * 179.97438 * 18 17 16 20 20 C 1.50707 * 109.46981 * 179.97438 * 19 18 17 21 21 C 1.38264 * 119.98658 * 269.72540 * 20 19 18 22 22 C 1.38228 * 120.05165 * 179.72984 * 21 20 19 23 23 C 1.38216 * 120.02162 * 0.54518 * 22 21 20 24 24 C 1.38444 * 119.97856 * 359.72644 * 23 22 21 25 25 F 1.35089 * 120.02670 * 180.02562 * 24 23 22 26 26 C 1.38169 * 119.98582 * 90.00016 * 20 19 18 27 27 H 0.97002 * 119.99653 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47457 * 60.00284 * 10 9 7 29 29 H 1.09006 * 109.47307 * 299.99892 * 10 9 7 30 30 H 0.97006 * 120.00427 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.47021 * 299.72588 * 14 13 11 32 32 H 1.08998 * 109.47357 * 59.72417 * 14 13 11 33 33 H 1.07998 * 119.99775 * 307.15121 * 15 14 13 34 34 H 1.07998 * 120.00521 * 187.55560 * 16 15 14 35 35 H 1.09005 * 109.47244 * 247.00582 * 17 16 15 36 36 H 1.08999 * 109.47189 * 7.00677 * 17 16 15 37 37 H 1.00906 * 110.99933 * 303.95148 * 18 17 16 38 38 H 1.08996 * 109.47344 * 299.99624 * 19 18 17 39 39 H 1.09000 * 109.47270 * 59.99833 * 19 18 17 40 40 H 1.08000 * 119.97596 * 359.97438 * 21 20 19 41 41 H 1.07997 * 119.98650 * 180.27827 * 22 21 20 42 42 H 1.07998 * 120.01555 * 179.75291 * 23 22 21 43 43 H 1.07997 * 120.01575 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2854 2.7465 0.0006 6 1 3.1042 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7279 -0.0019 10 6 2.5158 -3.8914 -0.0029 11 6 1.9872 -5.3027 -0.0036 12 8 0.7910 -5.5023 -0.0038 13 7 2.8440 -6.3431 -0.0049 14 6 2.3303 -7.7150 -0.0116 15 6 3.4847 -8.6837 -0.0186 16 6 3.5473 -9.6345 0.8803 17 6 2.3865 -9.8676 1.8127 18 7 1.9882 -11.2804 1.7551 19 6 0.8569 -11.5455 2.6538 20 6 0.4769 -13.0013 2.5673 21 6 -0.4653 -13.4159 1.6443 22 6 -0.8107 -14.7516 1.5599 23 6 -0.2226 -15.6727 2.4061 24 6 0.7169 -15.2580 3.3346 25 9 1.2928 -16.1575 4.1617 26 6 1.0662 -13.9203 3.4142 27 1 -0.4850 0.8401 0.0004 28 1 3.1244 -3.7322 0.8871 29 1 3.1244 -3.7305 -0.8928 30 1 3.8009 -6.1835 -0.0051 31 1 1.7230 -7.8799 0.8784 32 1 1.7203 -7.8703 -0.9015 33 1 4.2603 -8.5940 -0.7647 34 1 4.4308 -10.2514 0.9533 35 1 2.6819 -9.6148 2.8310 36 1 1.5471 -9.2409 1.5116 37 1 1.7713 -11.5567 0.8091 38 1 1.1420 -11.3043 3.6778 39 1 0.0067 -10.9303 2.3590 40 1 -0.9290 -12.6961 0.9860 41 1 -1.5435 -15.0750 0.8355 42 1 -0.4954 -16.7158 2.3428 43 1 1.7992 -13.5956 4.1378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568818671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:38 Heat of formation + Delta-G solvation = -60.763855 kcal Electronic energy + Delta-G solvation = -24069.852253 eV Core-core repulsion = 20155.026026 eV Total energy + Delta-G solvation = -3914.826227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.90831 -40.65604 -40.20129 -38.18387 -36.26008 -34.58292 -34.29059 -32.21781 -31.45195 -30.88719 -27.97871 -27.59830 -26.25512 -24.68005 -23.69828 -22.36920 -21.81922 -20.18674 -19.46862 -18.33135 -17.91962 -17.69154 -17.29665 -17.09907 -16.87712 -16.82424 -16.62967 -16.38033 -15.99802 -15.71217 -15.34621 -15.08027 -14.72010 -14.64169 -14.47317 -14.30190 -14.11105 -13.77482 -13.45351 -13.19169 -13.16588 -13.03957 -12.85858 -12.70759 -12.66487 -12.61157 -11.96546 -11.77741 -11.70511 -11.12415 -11.06529 -10.39147 -10.27779 -9.98229 -9.93432 -9.71453 -9.37215 -8.66433 -8.34069 -6.12385 0.14232 0.24288 0.98293 1.30958 1.44570 1.49177 1.59283 1.60817 2.27873 2.43879 2.57738 3.00113 3.21460 3.33259 3.39665 3.70775 3.76713 3.86746 4.00692 4.07679 4.11188 4.16991 4.25965 4.30939 4.31458 4.49380 4.51487 4.52655 4.62469 4.72034 4.75891 4.93596 5.01599 5.09872 5.16628 5.35595 5.37664 5.42156 5.50489 5.59234 5.71064 5.89878 5.96139 6.20080 6.37329 6.51606 7.07194 7.23818 8.74865 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028234 B = 0.001397 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.457437 B =20032.033496 C =20413.335493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.708 5.708 14 C 0.137 3.863 15 C -0.166 4.166 16 C -0.120 4.120 17 C 0.069 3.931 18 N -0.680 5.680 19 C 0.096 3.904 20 C -0.059 4.059 21 C -0.126 4.126 22 C -0.089 4.089 23 C -0.158 4.158 24 C 0.073 3.927 25 F -0.152 7.152 26 C -0.142 4.142 27 H 0.271 0.729 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.417 0.583 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.140 0.860 34 H 0.136 0.864 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.348 0.652 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.143 0.857 41 H 0.158 0.842 42 H 0.149 0.851 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 -30.795 3.049 31.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.362 5.362 14 C 0.014 3.986 15 C -0.185 4.185 16 C -0.139 4.139 17 C -0.059 4.059 18 N -0.311 5.311 19 C -0.032 4.032 20 C -0.059 4.059 21 C -0.145 4.145 22 C -0.107 4.107 23 C -0.177 4.177 24 C 0.054 3.946 25 F -0.131 7.131 26 C -0.161 4.161 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.254 0.746 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.166 0.834 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.161 0.839 41 H 0.176 0.824 42 H 0.167 0.833 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.150 -31.279 3.555 31.899 hybrid contribution 1.308 1.477 -0.214 1.984 sum 6.457 -29.802 3.341 30.676 Atomic orbital electron populations 1.70177 1.07978 1.28667 1.47932 1.26119 0.95949 1.03291 0.93690 0.85010 0.77811 0.75713 0.79502 1.18638 1.20420 1.18675 1.23185 0.95381 0.92021 1.59015 0.89865 1.85563 1.10605 0.99242 1.97068 1.23378 1.03555 0.94287 1.06880 1.20087 0.86223 0.86713 0.75135 1.90685 1.17447 1.86122 1.50347 1.45728 1.10403 1.04767 1.75332 1.20543 0.96106 0.79813 1.02116 1.22823 0.99074 0.96744 0.99865 1.22860 0.98650 0.98270 0.94134 1.21241 0.95958 0.88420 1.00244 1.60473 1.38277 1.19064 1.13288 1.20912 0.92532 0.91007 0.98788 1.19666 0.95764 0.95203 0.95310 1.21444 0.97578 0.96956 0.98496 1.21322 0.98979 0.92251 0.98130 1.21439 0.97523 1.02342 0.96391 1.17992 0.96940 0.87095 0.92582 1.91470 1.83539 1.67334 1.70747 1.21119 1.01874 0.91182 1.01945 0.91997 0.87174 0.87106 0.74567 0.91175 0.92035 0.84273 0.84664 0.89981 0.94085 0.83387 0.89667 0.93235 0.83926 0.82392 0.83340 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.75 13.22 21.65 0.29 -55.46 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.55 -31.11 9.50 67.95 0.65 -30.46 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 10 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 11 C 0.53 19.22 7.85 87.66 0.69 19.91 16 12 O -0.57 -25.92 15.86 -3.02 -0.05 -25.97 16 13 N -0.71 -17.04 5.55 -466.79 -2.59 -19.63 16 14 C 0.14 2.85 5.76 85.63 0.49 3.34 16 15 C -0.17 -2.20 9.63 25.65 0.25 -1.95 16 16 C -0.12 -1.46 9.77 25.65 0.25 -1.21 16 17 C 0.07 0.96 5.77 85.56 0.49 1.45 16 18 N -0.68 -8.79 6.48 -521.98 -3.38 -12.17 16 19 C 0.10 1.22 5.81 85.56 0.50 1.71 16 20 C -0.06 -0.78 5.39 -19.87 -0.11 -0.89 16 21 C -0.13 -1.39 9.70 22.27 0.22 -1.17 16 22 C -0.09 -0.87 10.04 22.26 0.22 -0.65 16 23 C -0.16 -1.93 10.03 22.31 0.22 -1.71 16 24 C 0.07 1.17 7.30 22.38 0.16 1.34 16 25 F -0.15 -2.84 17.27 44.97 0.78 -2.06 16 26 C -0.14 -2.15 9.68 22.31 0.22 -1.94 16 27 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 29 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 30 H 0.42 7.14 8.46 -92.70 -0.78 6.35 16 31 H 0.07 1.60 5.30 -2.39 -0.01 1.59 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.04 0.67 5.29 -2.39 -0.01 0.66 16 37 H 0.35 4.12 8.72 -89.69 -0.78 3.33 16 38 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 39 H 0.05 0.62 8.08 -2.39 -0.02 0.60 16 40 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 43 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -76.46 388.67 0.54 -75.92 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.52 Total: 19.25 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 5.16 Total: -15.55 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -5.69 Total: -87.27 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.05 Total: -25.97 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -76.46 0.54 -75.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568818671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.152 kcal (2) G-P(sol) polarization free energy of solvation -76.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds