Wall clock time and date at job start Tue Mar 31 2020 20:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86793 * 120.00146 * 2 1 4 4 H 1.48497 * 109.47630 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47126 * 300.00581 * 3 2 1 6 6 H 1.48505 * 109.47088 * 60.00000 * 3 2 1 7 7 C 1.39035 * 119.99745 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99531 * 171.39581 * 7 2 1 9 9 N 1.36872 * 120.00217 * 351.67571 * 7 2 1 10 10 C 1.34776 * 120.00138 * 151.58440 * 9 7 2 11 11 O 1.21624 * 119.99928 * 355.17902 * 10 9 7 12 12 C 1.47474 * 120.00104 * 175.18884 * 10 9 7 13 13 C 1.40267 * 119.84555 * 221.57887 * 12 10 9 14 14 C 1.36247 * 120.32576 * 179.71674 * 13 12 10 15 15 C 1.39732 * 119.98531 * 0.54946 * 14 13 12 16 16 C 1.40769 * 120.26157 * 359.71999 * 15 14 13 17 17 C 1.38705 * 119.45223 * 0.02562 * 16 15 14 18 18 N 1.37923 * 107.35546 * 180.02562 * 16 15 14 19 19 H 0.97000 * 124.93134 * 180.02562 * 18 16 15 20 20 C 1.36269 * 110.13524 * 0.02562 * 18 16 15 21 21 C 1.35699 * 109.81279 * 0.02562 * 20 18 16 22 22 C 1.48309 * 126.63392 * 180.02562 * 21 20 18 23 23 N 1.33733 * 126.31696 * 180.02562 * 22 21 20 24 24 N 1.28568 * 109.84476 * 179.97438 * 23 22 21 25 25 N 1.28918 * 109.73628 * 0.02562 * 24 23 22 26 26 H 0.96999 * 126.42409 * 180.02562 * 25 24 23 27 27 N 1.32038 * 126.31482 * 359.73523 * 22 21 20 28 28 C 1.46501 * 119.99975 * 331.57972 * 9 7 2 29 29 C 1.52997 * 117.50063 * 313.04610 * 28 9 7 30 30 C 1.52997 * 117.50046 * 244.41980 * 28 9 7 31 31 H 0.96993 * 120.00142 * 5.00318 * 1 2 3 32 32 H 1.08002 * 119.83668 * 359.97042 * 13 12 10 33 33 H 1.07998 * 120.00637 * 180.27429 * 14 13 12 34 34 H 1.08008 * 120.16534 * 179.97438 * 17 16 15 35 35 H 1.07997 * 125.09364 * 179.97438 * 20 18 16 36 36 H 1.09008 * 115.54680 * 98.75176 * 28 9 7 37 37 H 1.08994 * 117.49668 * 359.97438 * 29 28 9 38 38 H 1.09003 * 117.49927 * 145.01953 * 29 28 9 39 39 H 1.09006 * 117.50050 * 214.97913 * 30 28 9 40 40 H 1.08997 * 117.49795 * 359.97438 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6176 0.0000 4 1 3.7078 1.3464 -0.0006 5 1 1.8889 2.3965 -1.2125 6 1 1.8890 2.3964 1.2125 7 6 2.0089 -1.2041 -0.0005 8 1 3.0798 -1.2093 -0.1405 9 7 1.3354 -2.3833 0.1705 10 6 1.8184 -3.5198 -0.3694 11 8 2.8039 -3.4839 -1.0812 12 6 1.1519 -4.8068 -0.0972 13 6 1.9216 -5.9508 0.1607 14 6 1.3160 -7.1436 0.4190 15 6 -0.0784 -7.2338 0.4165 16 6 -0.8626 -6.0947 0.1537 17 6 -0.2396 -4.8823 -0.1033 18 7 -2.1848 -6.4816 0.2182 19 1 -2.9432 -5.8935 0.0767 20 6 -2.2712 -7.8099 0.5097 21 6 -1.0265 -8.3330 0.6451 22 6 -0.6882 -9.7421 0.9607 23 7 0.5415 -10.2508 1.0933 24 7 0.4678 -11.5046 1.3683 25 7 -0.7685 -11.8655 1.4267 26 1 -1.0998 -12.7569 1.6179 27 7 -1.5456 -10.7245 1.1679 28 6 0.0894 -2.4101 0.9406 29 6 0.0760 -1.6858 2.2882 30 6 0.0801 -3.2151 2.2417 31 1 -0.4850 0.8368 -0.0733 32 1 2.9996 -5.8848 0.1584 33 1 1.9136 -8.0201 0.6212 34 1 -0.8300 -4.0011 -0.3067 35 1 -3.1924 -8.3633 0.6176 36 1 -0.8277 -2.3949 0.3516 37 1 0.9944 -1.1897 2.6020 38 1 -0.8500 -1.1938 2.5860 39 1 -0.8432 -3.7292 2.5089 40 1 1.0010 -3.7251 2.5244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:23 Heat of formation + Delta-G solvation = 196.425364 kcal Electronic energy + Delta-G solvation = -28323.063138 eV Core-core repulsion = 24336.158234 eV Total energy + Delta-G solvation = -3986.904904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.21460 -41.19214 -39.00922 -36.46183 -35.83398 -34.12142 -33.04495 -33.02273 -31.57197 -30.96514 -29.31893 -28.84858 -25.23848 -24.76322 -23.56373 -23.10474 -22.12461 -21.43869 -21.25393 -20.18334 -19.20164 -18.71377 -17.47690 -16.95722 -16.57762 -16.46785 -15.63577 -15.14906 -14.87774 -14.56905 -14.45360 -14.11933 -14.08684 -13.92068 -13.50493 -13.33998 -12.86469 -12.54606 -12.28463 -12.10444 -11.66222 -11.47275 -11.26843 -11.23132 -11.13045 -10.99627 -10.88948 -10.70628 -10.64382 -10.46884 -10.30298 -9.83470 -9.50236 -9.19385 -8.87438 -8.43640 -8.01396 -7.68773 -7.50617 -6.35281 -3.92215 0.68604 1.19248 1.65907 2.01309 2.06844 2.96444 3.01960 3.15454 3.24507 3.30896 3.77405 3.83911 4.09056 4.17594 4.40049 4.71891 4.73865 4.78917 4.95358 5.15191 5.19499 5.34031 5.48059 5.56377 5.65484 5.77525 5.84102 5.90686 5.96942 5.98897 6.19704 6.34638 6.36863 6.40391 6.63904 6.68087 6.75189 6.85935 6.95479 7.01989 7.13477 7.33289 7.42340 7.54065 8.07925 8.12812 8.46944 9.15268 9.36209 9.95553 10.70496 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.002820 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.150417 B = 9926.941942 C =10466.398824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.041 3.959 3 Si 0.922 3.078 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.306 4.306 8 H 0.098 0.902 9 N -0.409 5.409 10 C 0.489 3.511 11 O -0.579 6.579 12 C -0.065 4.065 13 C -0.093 4.093 14 C -0.080 4.080 15 C -0.068 4.068 16 C 0.086 3.914 17 C -0.093 4.093 18 N -0.578 5.578 19 H 0.422 0.578 20 C 0.120 3.880 21 C -0.131 4.131 22 C 0.301 3.699 23 N -0.293 5.293 24 N 0.006 4.994 25 N -0.306 5.306 26 H 0.467 0.533 27 N -0.313 5.313 28 C 0.130 3.870 29 C -0.142 4.142 30 C -0.213 4.213 31 H 0.267 0.733 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.179 0.821 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 -16.756 4.843 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.163 4.163 3 Si 0.748 3.252 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.434 4.434 8 H 0.115 0.885 9 N -0.126 5.126 10 C 0.278 3.722 11 O -0.463 6.463 12 C -0.070 4.070 13 C -0.113 4.113 14 C -0.099 4.099 15 C -0.072 4.072 16 C -0.019 4.019 17 C -0.114 4.114 18 N -0.180 5.180 19 H 0.260 0.740 20 C -0.016 4.016 21 C -0.143 4.143 22 C 0.021 3.979 23 N -0.172 5.172 24 N 0.009 4.991 25 N -0.153 5.153 26 H 0.320 0.680 27 N -0.157 5.157 28 C 0.025 3.975 29 C -0.179 4.179 30 C -0.251 4.251 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.196 0.804 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.178 -16.932 4.655 19.814 hybrid contribution -0.826 0.873 0.029 1.202 sum -10.004 -16.059 4.684 19.491 Atomic orbital electron populations 1.69839 1.05903 1.27608 1.47298 1.25330 0.95488 0.99496 0.96035 0.85925 0.80036 0.81435 0.77764 1.19175 1.20684 1.20665 1.19603 0.93035 0.81961 1.48813 0.88464 1.43017 1.20277 1.06545 1.42800 1.17873 0.86984 0.83415 0.83889 1.90643 1.28722 1.86386 1.40573 1.19934 0.92233 0.95263 0.99548 1.20758 1.00238 0.91095 0.99200 1.20219 0.91934 0.97909 0.99839 1.18749 0.93117 0.90672 1.04710 1.18039 0.82841 0.95269 1.05703 1.20459 0.93973 0.94684 1.02268 1.41659 1.06927 1.08680 1.60718 0.73980 1.21734 0.98122 0.83570 0.98170 1.16973 0.92682 0.86322 1.18311 1.22713 0.86294 0.93852 0.95021 1.75537 1.22347 0.99451 1.19850 1.78347 1.03277 1.08173 1.09259 1.50933 1.02233 1.12651 1.49448 0.67969 1.78843 1.18165 0.92644 1.26065 1.21132 0.89036 1.01585 0.85739 1.22745 1.02188 0.92111 1.00879 1.23501 1.01909 0.95231 1.04441 0.92231 0.85315 0.85050 0.84790 0.80391 0.87850 0.89242 0.89872 0.89868 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.88 10.69 55.50 0.59 -21.29 16 2 C 0.04 1.05 4.83 -17.45 -0.08 0.97 16 3 Si 0.92 20.24 29.57 -169.99 -5.03 15.21 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.31 -8.28 8.73 -15.01 -0.13 -8.41 16 8 H 0.10 2.77 7.55 -52.49 -0.40 2.38 16 9 N -0.41 -10.20 2.91 -108.92 -0.32 -10.52 16 10 C 0.49 12.11 7.20 -12.50 -0.09 12.02 16 11 O -0.58 -16.37 16.73 5.26 0.09 -16.28 16 12 C -0.07 -1.30 4.75 -104.96 -0.50 -1.80 16 13 C -0.09 -1.69 9.57 -39.54 -0.38 -2.07 16 14 C -0.08 -1.30 10.03 -39.74 -0.40 -1.69 16 15 C -0.07 -1.03 6.36 -104.86 -0.67 -1.70 16 16 C 0.09 1.25 7.25 -84.00 -0.61 0.64 16 17 C -0.09 -1.58 7.29 -38.99 -0.28 -1.87 16 18 N -0.58 -6.00 6.04 -10.47 -0.06 -6.06 16 19 H 0.42 3.04 8.96 -40.82 -0.37 2.67 16 20 C 0.12 1.19 11.77 -16.49 -0.19 0.99 16 21 C -0.13 -1.71 6.29 -103.14 -0.65 -2.36 16 22 C 0.30 3.94 8.18 -156.43 -1.28 2.66 16 23 N -0.29 -4.08 11.96 32.11 0.38 -3.70 16 24 N 0.01 0.07 13.42 60.35 0.81 0.88 16 25 N -0.31 -2.63 8.44 60.35 0.51 -2.12 16 26 H 0.47 1.72 8.96 -331.92 -2.98 -1.26 16 27 N -0.31 -3.44 12.90 32.12 0.41 -3.03 16 28 C 0.13 2.76 2.17 -67.93 -0.15 2.61 16 29 C -0.14 -2.83 8.58 -26.73 -0.23 -3.06 16 30 C -0.21 -3.83 8.18 -26.73 -0.22 -4.05 16 31 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 32 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 33 H 0.13 1.97 7.68 -52.49 -0.40 1.57 16 34 H 0.13 2.29 5.46 -52.48 -0.29 2.01 16 35 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.10 2.20 6.63 -51.92 -0.34 1.86 16 37 H 0.09 1.94 7.95 -51.93 -0.41 1.53 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.09 1.62 8.09 -51.93 -0.42 1.20 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -33.40 347.15 -9.66 -43.07 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.43 Total: 5.72 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -5.86 Total: -7.11 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 2.33 Total: -45.84 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.09 Total: -16.28 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.40 -9.66 -43.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.492 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 206.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 196.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds