Wall clock time and date at job start Tue Mar 31 2020 20:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31340 * 1 3 3 Si 1.86796 * 120.00206 * 2 1 4 4 H 1.48493 * 109.47509 * 274.87376 * 3 2 1 5 5 H 1.48508 * 109.47050 * 34.87355 * 3 2 1 6 6 H 1.48509 * 109.47230 * 154.87038 * 3 2 1 7 7 C 1.39090 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00542 * 2.44700 * 7 2 1 9 9 N 1.36749 * 119.99700 * 182.44994 * 7 2 1 10 10 C 1.34775 * 120.00161 * 307.86892 * 9 7 2 11 11 O 1.21754 * 119.99575 * 3.64375 * 10 9 7 12 12 C 1.46560 * 119.99968 * 183.63770 * 10 9 7 13 13 N 1.37903 * 125.50443 * 254.15064 * 12 10 9 14 14 H 0.97004 * 124.94055 * 0.05378 * 13 12 10 15 15 C 1.37540 * 110.11125 * 180.28152 * 13 12 10 16 16 C 1.39338 * 132.81099 * 179.72063 * 15 13 12 17 17 C 1.37676 * 119.84148 * 180.02562 * 16 15 13 18 18 C 1.38891 * 120.69745 * 359.97438 * 17 16 15 19 19 C 1.36566 * 120.49259 * 0.02562 * 18 17 16 20 20 C 1.39735 * 119.80356 * 359.97438 * 19 18 17 21 21 C 1.38411 * 125.49494 * 74.03193 * 12 10 9 22 22 C 1.48012 * 126.77656 * 359.97438 * 21 12 10 23 23 N 1.34194 * 126.70227 * 179.36888 * 22 21 12 24 24 N 1.28987 * 107.25369 * 179.83782 * 23 22 21 25 25 N 1.28715 * 108.99253 * 0.43970 * 24 23 22 26 26 H 0.96996 * 125.32199 * 179.72757 * 25 24 23 27 27 N 1.28875 * 109.36614 * 359.72057 * 25 24 23 28 28 C 1.46508 * 119.99861 * 127.86886 * 9 7 2 29 29 C 1.52999 * 117.49539 * 13.43341 * 28 9 7 30 30 C 1.53008 * 117.49624 * 304.77602 * 28 9 7 31 31 H 0.97008 * 120.00127 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.07551 * 0.02562 * 16 15 13 33 33 H 1.08008 * 119.65075 * 180.02562 * 17 16 15 34 34 H 1.07992 * 119.75132 * 179.97438 * 18 17 16 35 35 H 1.07996 * 120.09800 * 179.97438 * 19 18 17 36 36 H 1.08989 * 115.54807 * 159.10741 * 28 9 7 37 37 H 1.08994 * 117.50292 * 0.02562 * 29 28 9 38 38 H 1.09002 * 117.49351 * 145.02599 * 29 28 9 39 39 H 1.08990 * 117.49335 * 214.97766 * 30 28 9 40 40 H 1.08993 * 117.50008 * 359.97438 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.3920 2.1059 -1.3949 5 1 1.5002 2.6207 0.8006 6 1 3.5927 1.4125 0.5946 7 6 2.0088 -1.2046 -0.0005 8 1 1.4696 -2.1394 -0.0409 9 7 3.3753 -1.2052 0.0501 10 6 4.0826 -0.4691 -0.8299 11 8 3.5050 0.2477 -1.6267 12 6 5.5469 -0.5314 -0.8274 13 7 6.3895 0.4499 -0.3492 14 1 6.0996 1.2902 0.0392 15 6 7.7006 0.0660 -0.5078 16 6 8.9117 0.6829 -0.2009 17 6 10.0975 0.0423 -0.4819 18 6 10.1015 -1.2163 -1.0692 19 6 8.9269 -1.8403 -1.3789 20 6 7.7113 -1.2090 -1.1027 21 6 6.3072 -1.5859 -1.3026 22 6 5.8035 -2.8434 -1.8991 23 7 6.5422 -3.8598 -2.3702 24 7 5.7245 -4.7609 -2.7982 25 7 4.5178 -4.3483 -2.6237 26 1 3.7169 -4.8390 -2.8657 27 7 4.5400 -3.1815 -2.0770 28 6 4.0705 -2.0061 1.0609 29 6 3.2514 -3.0527 1.8188 30 6 3.6989 -1.7712 2.5265 31 1 -0.4851 0.8401 0.0004 32 1 8.9201 1.6614 0.2563 33 1 11.0345 0.5232 -0.2423 34 1 11.0406 -1.7047 -1.2834 35 1 8.9375 -2.8188 -1.8359 36 1 5.1100 -2.2456 0.8375 37 1 2.1955 -3.1458 1.5652 38 1 3.7523 -3.9808 2.0944 39 1 4.4939 -1.8567 3.2671 40 1 2.9376 -1.0206 2.7386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:17 Heat of formation + Delta-G solvation = 197.999101 kcal Electronic energy + Delta-G solvation = -29797.366975 eV Core-core repulsion = 25810.530313 eV Total energy + Delta-G solvation = -3986.836662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.03091 -41.25742 -39.14738 -36.87297 -36.38367 -34.10984 -33.32797 -33.12092 -31.67866 -31.38527 -29.49634 -28.96211 -25.73467 -24.33610 -23.81238 -23.29231 -21.97700 -21.84834 -21.37315 -20.37688 -19.54959 -18.71222 -18.01911 -17.22238 -16.75270 -16.40823 -16.02631 -15.45234 -14.99442 -14.82616 -14.40891 -14.10614 -13.88531 -13.83481 -13.57634 -13.50508 -13.28092 -12.93869 -12.62916 -11.99469 -11.69645 -11.66419 -11.60740 -11.23712 -11.12221 -10.98939 -10.88751 -10.82920 -10.61741 -10.43957 -10.18656 -10.07349 -9.70707 -9.36913 -9.14089 -8.67776 -8.17057 -7.61674 -7.53680 -6.34141 -4.28137 0.93220 1.42940 1.61096 1.94235 2.57434 2.60921 3.09240 3.24434 3.30553 3.50688 3.69803 3.96409 4.07672 4.20931 4.34102 4.44333 4.55001 4.75905 4.87160 5.08039 5.13297 5.24502 5.42427 5.43623 5.50815 5.53423 5.61629 5.63218 5.80355 5.84111 5.95768 6.09912 6.12274 6.19316 6.44447 6.59894 6.62012 6.66009 6.70561 6.74114 6.79846 7.11261 7.41928 7.62550 7.84819 8.50484 8.52699 8.57616 9.17278 9.49698 10.66537 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.005719 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.021115 B = 4895.022829 C = 6133.759786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.078 3.922 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.320 1.320 6 H -0.301 1.301 7 C -0.332 4.332 8 H 0.102 0.898 9 N -0.396 5.396 10 C 0.513 3.487 11 O -0.531 6.531 12 C 0.137 3.863 13 N -0.565 5.565 14 H 0.424 0.576 15 C 0.099 3.901 16 C -0.126 4.126 17 C -0.100 4.100 18 C -0.146 4.146 19 C -0.060 4.060 20 C -0.071 4.071 21 C -0.092 4.092 22 C 0.251 3.749 23 N -0.274 5.274 24 N -0.066 5.066 25 N -0.229 5.229 26 H 0.474 0.526 27 N -0.263 5.263 28 C 0.060 3.940 29 C -0.170 4.170 30 C -0.190 4.190 31 H 0.275 0.725 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.261 -4.222 1.459 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.131 4.131 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.252 1.252 6 H -0.229 1.229 7 C -0.458 4.458 8 H 0.119 0.881 9 N -0.112 5.112 10 C 0.301 3.699 11 O -0.416 6.416 12 C 0.018 3.982 13 N -0.167 5.167 14 H 0.262 0.738 15 C -0.008 4.008 16 C -0.147 4.147 17 C -0.119 4.119 18 C -0.165 4.165 19 C -0.079 4.079 20 C -0.077 4.077 21 C -0.104 4.104 22 C -0.028 4.028 23 N -0.148 5.148 24 N -0.060 5.060 25 N -0.075 5.075 26 H 0.327 0.673 27 N -0.115 5.115 28 C -0.046 4.046 29 C -0.208 4.208 30 C -0.229 4.229 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.746 -4.299 0.827 15.382 hybrid contribution -0.361 1.352 0.229 1.417 sum 14.385 -2.948 1.055 14.722 Atomic orbital electron populations 1.69636 1.06639 1.28538 1.45026 1.25586 0.95247 1.00098 0.92155 0.85424 0.76886 0.80875 0.77466 1.19344 1.25213 1.22919 1.18736 0.77310 0.95252 1.54536 0.88078 1.42781 1.06016 1.39218 1.23228 1.17313 0.83080 0.86458 0.83022 1.90490 1.68865 1.41767 1.40450 1.20980 0.92071 0.88016 0.97136 1.41955 1.03784 1.18410 1.52590 0.73782 1.18248 0.84631 0.95298 1.02650 1.20063 0.89250 1.00474 1.04909 1.20790 0.96719 0.95262 0.99125 1.20641 0.97748 0.95872 1.02285 1.20441 0.89921 0.99818 0.97719 1.18653 0.91602 0.94099 1.03322 1.17111 0.90709 0.90626 1.11947 1.22511 0.84898 0.95255 1.00148 1.76010 1.24866 0.99478 1.14417 1.78769 0.88683 1.21497 1.17100 1.47735 1.09572 1.11482 1.38703 0.67275 1.75492 1.21588 0.98832 1.15569 1.21888 0.95835 0.99427 0.87405 1.23108 1.02190 0.92146 1.03373 1.23243 1.03757 1.00958 0.94903 0.91491 0.86016 0.85771 0.85922 0.84961 0.87134 0.87027 0.89729 0.89490 0.88034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.91 13.95 55.50 0.77 -24.14 16 2 C 0.08 2.19 5.33 -17.45 -0.09 2.09 16 3 Si 0.96 24.68 24.11 -169.99 -4.10 20.58 16 4 H -0.27 -7.33 6.62 56.52 0.37 -6.96 16 5 H -0.32 -8.11 7.11 56.52 0.40 -7.71 16 6 H -0.30 -7.28 6.33 56.52 0.36 -6.92 16 7 C -0.33 -8.75 8.44 -15.04 -0.13 -8.87 16 8 H 0.10 2.80 7.19 -52.49 -0.38 2.42 16 9 N -0.40 -9.14 2.52 -109.25 -0.28 -9.41 16 10 C 0.51 12.12 4.30 -12.91 -0.06 12.06 16 11 O -0.53 -14.49 12.07 5.14 0.06 -14.43 16 12 C 0.14 2.73 5.41 -81.72 -0.44 2.29 16 13 N -0.56 -9.48 6.09 -6.97 -0.04 -9.53 16 14 H 0.42 6.40 8.96 -40.82 -0.37 6.03 16 15 C 0.10 1.49 7.23 -83.96 -0.61 0.89 16 16 C -0.13 -1.51 10.08 -39.38 -0.40 -1.90 16 17 C -0.10 -1.05 10.01 -39.54 -0.40 -1.44 16 18 C -0.15 -1.63 9.98 -39.94 -0.40 -2.03 16 19 C -0.06 -0.83 10.05 -39.63 -0.40 -1.23 16 20 C -0.07 -1.16 6.33 -104.97 -0.66 -1.82 16 21 C -0.09 -1.72 5.42 -102.39 -0.55 -2.27 16 22 C 0.25 4.63 8.14 -156.21 -1.27 3.36 16 23 N -0.27 -4.64 12.19 32.11 0.39 -4.25 16 24 N -0.07 -0.99 13.46 60.35 0.81 -0.18 16 25 N -0.23 -3.26 7.90 60.35 0.48 -2.79 16 26 H 0.47 4.65 8.96 -340.34 -3.05 1.60 16 27 N -0.26 -4.85 11.50 32.12 0.37 -4.48 16 28 C 0.06 1.15 6.12 -67.92 -0.42 0.74 16 29 C -0.17 -2.95 9.86 -26.69 -0.26 -3.21 16 30 C -0.19 -3.30 10.18 -26.69 -0.27 -3.57 16 31 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.76 7.70 -52.49 -0.40 1.36 16 36 H 0.11 2.05 6.25 -51.94 -0.32 1.72 16 37 H 0.11 2.14 6.66 -51.93 -0.35 1.80 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 343.38 15.07 5.17 5.17 Total: -1.00 -33.48 343.38 -9.32 -42.81 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.61 Total: 5.56 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -6.36 Total: -4.93 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 2.51 Total: -54.77 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.06 Total: -14.43 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -4.10 Total: 20.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.48 -9.32 -42.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.804 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 197.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds