Wall clock time and date at job start Tue Mar 31 2020 20:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31340 * 1 3 3 Si 1.86796 * 120.00206 * 2 1 4 4 H 1.48493 * 109.47509 * 274.87376 * 3 2 1 5 5 H 1.48508 * 109.47050 * 34.87355 * 3 2 1 6 6 H 1.48509 * 109.47230 * 154.87038 * 3 2 1 7 7 C 1.39090 * 119.99578 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00542 * 2.44700 * 7 2 1 9 9 N 1.36749 * 119.99700 * 182.44994 * 7 2 1 10 10 C 1.34775 * 120.00161 * 307.86892 * 9 7 2 11 11 O 1.21754 * 119.99575 * 3.64375 * 10 9 7 12 12 C 1.46560 * 119.99968 * 183.63770 * 10 9 7 13 13 N 1.37903 * 125.50443 * 254.15064 * 12 10 9 14 14 H 0.97004 * 124.94055 * 0.05378 * 13 12 10 15 15 C 1.37540 * 110.11125 * 180.28152 * 13 12 10 16 16 C 1.39338 * 132.81099 * 179.72063 * 15 13 12 17 17 C 1.37676 * 119.84148 * 180.02562 * 16 15 13 18 18 C 1.38891 * 120.69745 * 359.97438 * 17 16 15 19 19 C 1.36566 * 120.49259 * 0.02562 * 18 17 16 20 20 C 1.39735 * 119.80356 * 359.97438 * 19 18 17 21 21 C 1.38411 * 125.49494 * 74.03193 * 12 10 9 22 22 C 1.48012 * 126.77656 * 359.97438 * 21 12 10 23 23 N 1.34194 * 126.70227 * 179.36888 * 22 21 12 24 24 N 1.28987 * 107.25369 * 179.83782 * 23 22 21 25 25 N 1.28715 * 108.99253 * 0.43970 * 24 23 22 26 26 H 0.96996 * 125.32199 * 179.72757 * 25 24 23 27 27 N 1.28875 * 109.36614 * 359.72057 * 25 24 23 28 28 C 1.46508 * 119.99861 * 127.86886 * 9 7 2 29 29 C 1.52999 * 117.49539 * 13.43341 * 28 9 7 30 30 C 1.53008 * 117.49624 * 304.77602 * 28 9 7 31 31 H 0.97008 * 120.00127 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.07551 * 0.02562 * 16 15 13 33 33 H 1.08008 * 119.65075 * 180.02562 * 17 16 15 34 34 H 1.07992 * 119.75132 * 179.97438 * 18 17 16 35 35 H 1.07996 * 120.09800 * 179.97438 * 19 18 17 36 36 H 1.08989 * 115.54807 * 159.10741 * 28 9 7 37 37 H 1.08994 * 117.50292 * 0.02562 * 29 28 9 38 38 H 1.09002 * 117.49351 * 145.02599 * 29 28 9 39 39 H 1.08990 * 117.49335 * 214.97766 * 30 28 9 40 40 H 1.08993 * 117.50008 * 359.97438 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.3920 2.1059 -1.3949 5 1 1.5002 2.6207 0.8006 6 1 3.5927 1.4125 0.5946 7 6 2.0088 -1.2046 -0.0005 8 1 1.4696 -2.1394 -0.0409 9 7 3.3753 -1.2052 0.0501 10 6 4.0826 -0.4691 -0.8299 11 8 3.5050 0.2477 -1.6267 12 6 5.5469 -0.5314 -0.8274 13 7 6.3895 0.4499 -0.3492 14 1 6.0996 1.2902 0.0392 15 6 7.7006 0.0660 -0.5078 16 6 8.9117 0.6829 -0.2009 17 6 10.0975 0.0423 -0.4819 18 6 10.1015 -1.2163 -1.0692 19 6 8.9269 -1.8403 -1.3789 20 6 7.7113 -1.2090 -1.1027 21 6 6.3072 -1.5859 -1.3026 22 6 5.8035 -2.8434 -1.8991 23 7 6.5422 -3.8598 -2.3702 24 7 5.7245 -4.7609 -2.7982 25 7 4.5178 -4.3483 -2.6237 26 1 3.7169 -4.8390 -2.8657 27 7 4.5400 -3.1815 -2.0770 28 6 4.0705 -2.0061 1.0609 29 6 3.2514 -3.0527 1.8188 30 6 3.6989 -1.7712 2.5265 31 1 -0.4851 0.8401 0.0004 32 1 8.9201 1.6614 0.2563 33 1 11.0345 0.5232 -0.2423 34 1 11.0406 -1.7047 -1.2834 35 1 8.9375 -2.8188 -1.8359 36 1 5.1100 -2.2456 0.8375 37 1 2.1955 -3.1458 1.5652 38 1 3.7523 -3.9808 2.0944 39 1 4.4939 -1.8567 3.2671 40 1 2.9376 -1.0206 2.7386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:16 Heat of formation + Delta-G solvation = 174.483491 kcal Electronic energy + Delta-G solvation = -29798.386688 eV Core-core repulsion = 25810.530313 eV Total energy + Delta-G solvation = -3987.856375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.33314 -42.51955 -40.81483 -38.30035 -37.71084 -35.39092 -35.05474 -34.63879 -33.57285 -32.51878 -30.65506 -30.18528 -27.47605 -25.70525 -25.15607 -24.65924 -23.35362 -23.11782 -22.69807 -21.75131 -21.16618 -20.04089 -19.48859 -18.61997 -18.08401 -17.96817 -17.48369 -16.94210 -16.57119 -16.27545 -15.72366 -15.49877 -15.42181 -15.17104 -14.98190 -14.79907 -14.73204 -14.61685 -14.10437 -13.55100 -13.28480 -13.03624 -12.71158 -12.61602 -12.45475 -12.39620 -12.30342 -12.15768 -12.10850 -12.07614 -11.79626 -11.69115 -11.36232 -11.11325 -10.73637 -10.45238 -9.46286 -9.25728 -8.73393 -8.47315 -6.40149 -0.32033 0.19996 0.55929 0.77956 0.94265 1.15006 1.39945 1.45434 1.63179 1.75526 1.93920 2.31935 2.55152 2.83122 2.88326 2.97796 3.10115 3.12896 3.53682 3.71488 3.94166 4.05800 4.13701 4.19659 4.22114 4.30877 4.44943 4.53743 4.57572 4.76440 4.77895 4.79079 4.82380 5.13069 5.18560 5.36854 5.40971 5.51296 5.58526 5.62754 5.65435 5.73350 5.83152 6.11089 6.28905 6.53010 6.65839 7.11474 7.21910 7.57826 8.56128 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.005719 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.021115 B = 4895.022829 C = 6133.759786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.037 3.963 3 Si 0.998 3.002 4 H -0.298 1.298 5 H -0.316 1.316 6 H -0.282 1.282 7 C -0.319 4.319 8 H 0.080 0.920 9 N -0.402 5.402 10 C 0.519 3.481 11 O -0.579 6.579 12 C 0.100 3.900 13 N -0.561 5.561 14 H 0.427 0.573 15 C 0.094 3.906 16 C -0.129 4.129 17 C -0.083 4.083 18 C -0.134 4.134 19 C -0.075 4.075 20 C -0.095 4.095 21 C -0.089 4.089 22 C 0.239 3.761 23 N -0.278 5.278 24 N -0.052 5.052 25 N -0.208 5.208 26 H 0.489 0.511 27 N -0.298 5.298 28 C 0.042 3.958 29 C -0.159 4.159 30 C -0.176 4.176 31 H 0.276 0.724 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.775 -4.661 2.676 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.167 4.167 3 Si 0.834 3.166 4 H -0.227 1.227 5 H -0.248 1.248 6 H -0.208 1.208 7 C -0.446 4.446 8 H 0.098 0.902 9 N -0.118 5.118 10 C 0.309 3.691 11 O -0.467 6.467 12 C -0.018 4.018 13 N -0.164 5.164 14 H 0.267 0.733 15 C -0.013 4.013 16 C -0.149 4.149 17 C -0.102 4.102 18 C -0.153 4.153 19 C -0.093 4.093 20 C -0.100 4.100 21 C -0.102 4.102 22 C -0.040 4.040 23 N -0.152 5.152 24 N -0.047 5.047 25 N -0.058 5.058 26 H 0.347 0.653 27 N -0.150 5.150 28 C -0.062 4.062 29 C -0.197 4.197 30 C -0.214 4.214 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.183 0.817 34 H 0.174 0.826 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.105 0.895 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 19.278 -4.772 2.085 19.969 hybrid contribution -1.531 1.314 -0.244 2.032 sum 17.748 -3.458 1.842 18.175 Atomic orbital electron populations 1.69693 1.07499 1.28915 1.47851 1.26099 0.95707 1.02137 0.92790 0.84738 0.77231 0.78881 0.75715 1.22699 1.24764 1.20838 1.18548 0.79017 0.94026 1.53043 0.90236 1.42851 1.05009 1.39594 1.24356 1.17662 0.84902 0.84711 0.81810 1.90434 1.70548 1.43603 1.42079 1.20201 0.90179 0.90225 1.01216 1.41808 1.04159 1.17915 1.52558 0.73322 1.18615 0.84626 0.95258 1.02793 1.20493 0.88249 1.01628 1.04573 1.21327 0.97750 0.94568 0.96543 1.21084 0.98006 0.95939 1.00224 1.20576 0.90007 1.00157 0.98581 1.18821 0.91146 0.95119 1.04932 1.17383 0.92066 0.90026 1.10695 1.22668 0.84970 0.95760 1.00572 1.76001 1.25063 0.99358 1.14760 1.78706 0.88749 1.20916 1.16355 1.47728 1.10118 1.10515 1.37404 0.65310 1.75448 1.22295 1.00387 1.16865 1.22027 0.96289 1.00432 0.87450 1.23124 1.00805 0.93505 1.02244 1.23302 1.03904 1.00039 0.94188 0.91460 0.83338 0.81675 0.82629 0.85151 0.85991 0.89526 0.86259 0.85634 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.38 13.95 21.69 0.30 -54.08 16 2 C 0.04 2.17 5.33 84.97 0.45 2.62 16 3 Si 1.00 52.67 24.11 68.60 1.65 54.32 16 4 H -0.30 -17.14 6.62 99.48 0.66 -16.48 16 5 H -0.32 -16.08 7.11 99.48 0.71 -15.37 16 6 H -0.28 -13.62 6.33 99.48 0.63 -12.99 16 7 C -0.32 -17.48 8.44 84.13 0.71 -16.77 16 8 H 0.08 4.64 7.19 -2.92 -0.02 4.62 16 9 N -0.40 -18.96 2.52 -617.74 -1.56 -20.52 16 10 C 0.52 25.13 4.30 86.41 0.37 25.50 16 11 O -0.58 -32.85 12.07 -4.52 -0.05 -32.90 16 12 C 0.10 4.02 5.41 40.40 0.22 4.24 16 13 N -0.56 -18.35 6.09 -175.97 -1.07 -19.42 16 14 H 0.43 12.59 8.96 -92.71 -0.83 11.76 16 15 C 0.09 2.61 7.23 39.11 0.28 2.90 16 16 C -0.13 -2.52 10.08 22.40 0.23 -2.29 16 17 C -0.08 -1.27 10.01 22.29 0.22 -1.05 16 18 C -0.13 -2.34 9.98 22.04 0.22 -2.12 16 19 C -0.07 -1.84 10.05 22.24 0.22 -1.61 16 20 C -0.10 -2.92 6.33 -20.09 -0.13 -3.05 16 21 C -0.09 -3.29 5.42 -18.42 -0.10 -3.39 16 22 C 0.24 8.79 8.14 137.14 1.12 9.91 16 23 N -0.28 -9.19 12.19 -52.34 -0.64 -9.83 16 24 N -0.05 -1.53 13.46 37.02 0.50 -1.03 16 25 N -0.21 -5.85 7.90 37.02 0.29 -5.56 16 26 H 0.49 9.42 8.96 -347.52 -3.11 6.31 16 27 N -0.30 -11.07 11.50 -52.29 -0.60 -11.67 16 28 C 0.04 1.61 6.12 44.99 0.28 1.88 16 29 C -0.16 -5.34 9.86 30.62 0.30 -5.04 16 30 C -0.18 -5.85 10.18 30.62 0.31 -5.54 16 31 H 0.28 15.75 8.31 -92.70 -0.77 14.98 16 32 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 34 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.13 3.20 7.70 -2.91 -0.02 3.18 16 36 H 0.12 4.39 6.25 -2.39 -0.01 4.38 16 37 H 0.09 3.38 6.66 -2.39 -0.02 3.36 16 38 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -77.04 343.38 0.61 -76.43 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -2.92 Total: 18.06 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 4.71 Total: 6.19 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -2.78 Total: -122.10 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.05 Total: -32.90 kcal Atomic # 14 Polarization: 52.67 SS G_CDS: 1.65 Total: 54.32 kcal Total: -77.04 0.61 -76.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 250.915 kcal (2) G-P(sol) polarization free energy of solvation -77.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds