Wall clock time and date at job start Tue Mar 31 2020 21:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34876 * 116.99921 * 2 1 4 4 O 1.21595 * 119.99855 * 0.02562 * 3 2 1 5 5 C 1.46631 * 119.99409 * 180.02562 * 3 2 1 6 6 N 1.37837 * 125.85818 * 0.32324 * 5 3 2 7 7 H 0.96996 * 125.38954 * 0.02562 * 6 5 3 8 8 C 1.34254 * 109.21734 * 180.15396 * 6 5 3 9 9 C 1.50696 * 125.80200 * 179.84279 * 8 6 5 10 10 C 1.38320 * 108.40083 * 359.57383 * 8 6 5 11 11 C 1.47313 * 126.46188 * 180.26246 * 10 8 6 12 12 O 1.21635 * 120.00160 * 90.03045 * 11 10 8 13 13 N 1.34782 * 120.00203 * 270.02524 * 11 10 8 14 14 C 1.36974 * 119.99350 * 0.02562 * 13 11 10 15 15 H 1.07991 * 120.00660 * 325.61620 * 14 13 11 16 16 C 1.38983 * 119.99629 * 145.61798 * 14 13 11 17 17 N 1.31414 * 119.99875 * 338.44128 * 16 14 13 18 18 Si 1.86796 * 119.99926 * 158.43457 * 16 14 13 19 19 H 1.48497 * 109.47107 * 90.00099 * 18 16 14 20 20 H 1.48498 * 109.47132 * 210.00164 * 18 16 14 21 21 H 1.48502 * 109.47192 * 329.99798 * 18 16 14 22 22 C 1.46492 * 120.00071 * 179.97438 * 13 11 10 23 23 C 1.53007 * 109.47168 * 85.51103 * 22 13 11 24 24 C 1.50700 * 109.47093 * 179.97438 * 23 22 13 25 25 O 1.20822 * 120.00240 * 0.02562 * 24 23 22 26 26 O 1.34229 * 119.99593 * 180.02562 * 24 23 22 27 27 C 1.36451 * 125.84852 * 180.02562 * 5 3 2 28 28 C 1.50698 * 126.49224 * 0.04033 * 27 5 3 29 29 H 1.09005 * 109.47293 * 59.99419 * 1 2 3 30 30 H 1.08998 * 109.47398 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47237 * 299.99591 * 1 2 3 32 32 H 1.09003 * 109.46651 * 269.69433 * 9 8 6 33 33 H 1.08996 * 109.47471 * 149.69073 * 9 8 6 34 34 H 1.08996 * 109.47244 * 29.68738 * 9 8 6 35 35 H 0.97001 * 119.99655 * 180.02562 * 17 16 14 36 36 H 1.08996 * 109.47407 * 205.50898 * 22 13 11 37 37 H 1.08996 * 109.47528 * 325.51219 * 22 13 11 38 38 H 1.08996 * 109.46789 * 300.00174 * 23 22 13 39 39 H 1.09002 * 109.46711 * 60.00114 * 23 22 13 40 40 H 0.96700 * 116.99834 * 180.02562 * 26 24 23 41 41 H 1.09003 * 109.47239 * 269.97733 * 28 27 5 42 42 H 1.08999 * 109.47383 * 29.97873 * 28 27 5 43 43 H 1.08994 * 109.47005 * 149.97490 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4020 2.2215 0.0005 5 6 3.5286 1.2784 -0.0006 6 7 4.3933 0.2050 -0.0074 7 1 4.1299 -0.7285 -0.0131 8 6 5.6578 0.6561 -0.0023 9 6 6.8987 -0.1988 -0.0036 10 6 5.6280 2.0390 -0.0017 11 6 6.7936 2.9397 -0.0021 12 8 7.2738 3.3125 -1.0556 13 7 7.3280 3.3509 1.1649 14 6 6.7875 2.9308 2.3513 15 1 5.7222 2.7744 2.4341 16 6 7.6101 2.7058 3.4487 17 7 8.8923 2.4774 3.2728 18 14 6.8934 2.7282 5.1735 19 1 6.4464 1.3608 5.5416 20 1 7.9292 3.1858 6.1341 21 1 5.7346 3.6560 5.2160 22 6 8.4875 4.2462 1.1645 23 6 8.0122 5.6963 1.0528 24 6 9.2050 6.6174 1.0530 25 8 10.3207 6.1609 1.1336 26 8 9.0277 7.9449 0.9635 27 6 4.2689 2.4246 -0.0001 28 6 3.7373 3.8348 0.0019 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 7.1986 -0.4055 1.0238 33 1 7.7025 0.3281 -0.5177 34 1 6.6927 -1.1376 -0.5177 35 1 9.4663 2.3199 4.0387 36 1 9.0464 4.1175 2.0914 37 1 9.1300 4.0083 0.3168 38 1 7.4533 5.8251 0.1259 39 1 7.3697 5.9343 1.9006 40 1 9.8229 8.4952 0.9672 41 1 3.6085 4.1760 -1.0253 42 1 2.7767 3.8603 0.5163 43 1 4.4422 4.4880 0.5160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606521252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:29 Heat of formation + Delta-G solvation = -168.960675 kcal Electronic energy + Delta-G solvation = -30258.426302 eV Core-core repulsion = 25883.782648 eV Total energy + Delta-G solvation = -4374.643654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.29740 -39.83694 -39.71849 -38.14756 -36.36570 -35.76407 -34.86909 -32.59203 -31.94607 -31.45540 -30.28092 -28.27530 -27.47739 -25.95762 -25.19036 -24.29550 -22.07893 -21.22766 -20.14347 -19.28743 -18.73926 -18.30467 -17.71660 -16.75946 -16.46879 -16.35758 -15.93011 -15.78750 -15.34084 -15.21097 -14.60768 -14.31546 -14.06981 -13.77120 -13.30921 -13.17865 -13.02317 -12.77518 -12.62564 -12.55573 -12.43059 -12.33605 -12.16107 -11.87529 -11.76814 -11.64934 -11.29480 -11.17353 -11.11334 -10.96352 -10.84219 -10.70288 -10.43785 -10.25390 -10.12118 -10.04299 -9.18047 -8.67926 -8.24371 -7.70820 -7.58194 -6.40668 -4.06937 1.48493 2.69822 2.70138 2.85193 3.08778 3.20622 3.24524 3.33965 3.36946 3.45797 3.82047 4.11361 4.85092 4.94147 4.99559 5.04878 5.07938 5.17763 5.36531 5.47174 5.58549 5.66803 5.79494 5.84321 6.00353 6.00936 6.18004 6.20588 6.31125 6.33251 6.38499 6.39074 6.55391 6.69690 6.85163 6.90460 7.08343 7.26962 7.33824 7.49765 7.68734 7.82218 7.88866 8.32943 8.37859 9.04439 9.45472 9.87841 10.60803 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.011682 B = 0.003933 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.184611 B = 7117.539609 C = 7815.172103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.369 6.369 3 C 0.539 3.461 4 O -0.504 6.504 5 C -0.071 4.071 6 N -0.526 5.526 7 H 0.419 0.581 8 C 0.114 3.886 9 C -0.088 4.088 10 C -0.167 4.167 11 C 0.541 3.459 12 O -0.597 6.597 13 N -0.426 5.426 14 C -0.332 4.332 15 H 0.093 0.907 16 C 0.044 3.956 17 N -0.854 5.854 18 Si 0.907 3.093 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.268 1.268 22 C 0.125 3.875 23 C -0.127 4.127 24 C 0.483 3.517 25 O -0.514 6.514 26 O -0.525 6.525 27 C -0.020 4.020 28 C -0.092 4.092 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.270 0.730 36 H 0.121 0.879 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.401 0.599 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 -3.127 -2.665 9.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.286 6.286 3 C 0.386 3.614 4 O -0.392 6.392 5 C -0.179 4.179 6 N -0.122 5.122 7 H 0.256 0.744 8 C -0.007 4.007 9 C -0.145 4.145 10 C -0.176 4.176 11 C 0.329 3.671 12 O -0.483 6.483 13 N -0.143 5.143 14 C -0.460 4.460 15 H 0.111 0.889 16 C -0.162 4.162 17 N -0.490 5.490 18 Si 0.733 3.267 19 H -0.204 1.204 20 H -0.207 1.207 21 H -0.192 1.192 22 C 0.001 3.999 23 C -0.166 4.166 24 C 0.326 3.674 25 O -0.402 6.402 26 O -0.336 6.336 27 C -0.029 4.029 28 C -0.149 4.149 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.258 0.742 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.016 -3.200 -3.013 10.030 hybrid contribution -0.167 -0.145 1.095 1.118 sum -9.183 -3.345 -1.918 9.960 Atomic orbital electron populations 1.23199 0.76212 1.03347 1.02608 1.86554 1.23516 1.33326 1.85246 1.19865 0.87011 0.81440 0.73074 1.90843 1.65421 1.35562 1.47397 1.18356 0.85862 0.87820 1.25846 1.41354 1.05070 1.08324 1.57458 0.74382 1.20720 0.85251 0.93480 1.01292 1.20442 0.92761 0.97304 1.04027 1.19261 0.93263 0.92031 1.13011 1.17492 0.84041 0.81679 0.83904 1.90645 1.64663 1.61074 1.31906 1.43384 1.27402 1.38832 1.04704 1.19406 0.93242 1.46359 0.86963 0.88926 1.25313 0.95283 0.95515 1.00108 1.69916 1.04972 1.42477 1.31666 0.86255 0.79092 0.78852 0.82504 1.20365 1.20720 1.19207 1.21247 0.89104 0.83683 1.05883 1.21880 0.94324 0.95086 1.05275 1.23778 0.91635 0.80892 0.71120 1.90700 1.27087 1.76875 1.45531 1.84595 1.42978 1.20169 1.85871 1.19612 0.91051 0.94027 0.98178 1.20400 1.01486 0.90858 1.02194 0.91927 0.88353 0.91864 0.89348 0.89359 0.91912 0.91918 0.86146 0.91717 0.88305 0.87762 0.74173 0.91370 0.90363 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.37 -4.79 10.58 -40.97 -0.43 -5.22 16 3 C 0.54 8.59 7.93 34.12 0.27 8.87 16 4 O -0.50 -8.82 14.49 -19.34 -0.28 -9.10 16 5 C -0.07 -1.22 7.02 -82.42 -0.58 -1.80 16 6 N -0.53 -7.95 6.01 -5.61 -0.03 -7.98 16 7 H 0.42 4.80 8.96 -40.82 -0.37 4.43 16 8 C 0.11 2.02 7.21 -81.50 -0.59 1.43 16 9 C -0.09 -1.36 10.24 36.00 0.37 -0.99 16 10 C -0.17 -3.49 4.28 -105.02 -0.45 -3.94 16 11 C 0.54 12.81 6.79 -12.57 -0.09 12.72 16 12 O -0.60 -15.50 16.76 5.25 0.09 -15.41 16 13 N -0.43 -10.15 2.55 -116.07 -0.30 -10.45 16 14 C -0.33 -7.97 8.71 -14.98 -0.13 -8.10 16 15 H 0.09 2.24 7.25 -52.49 -0.38 1.86 16 16 C 0.04 1.06 4.94 -17.45 -0.09 0.97 16 17 N -0.85 -21.54 11.31 55.50 0.63 -20.91 16 18 Si 0.91 18.95 29.60 -169.99 -5.03 13.92 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C 0.12 2.90 4.20 -4.04 -0.02 2.89 16 23 C -0.13 -2.47 6.11 -27.88 -0.17 -2.64 16 24 C 0.48 8.83 8.33 36.01 0.30 9.13 16 25 O -0.51 -10.88 16.74 -18.75 -0.31 -11.19 16 26 O -0.52 -7.49 13.42 -39.25 -0.53 -8.01 16 27 C -0.02 -0.38 6.15 -104.11 -0.64 -1.02 16 28 C -0.09 -1.65 9.63 36.00 0.35 -1.31 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.09 1.53 7.93 -51.93 -0.41 1.12 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.27 6.52 8.31 -40.82 -0.34 6.19 16 36 H 0.12 3.03 5.29 -51.93 -0.27 2.76 16 37 H 0.06 1.61 7.52 -51.93 -0.39 1.22 16 38 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 39 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 40 H 0.40 3.77 9.10 45.56 0.41 4.19 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.35 6.41 -51.93 -0.33 1.02 16 43 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 LS Contribution 378.84 15.07 5.71 5.71 Total: -1.00 -32.39 378.84 -5.56 -37.95 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -4.68 Total: 13.06 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: -0.39 Total: 17.64 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.30 Total: -39.35 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -1.47 Total: -48.94 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.39 -5.56 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606521252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.007 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds