Wall clock time and date at job start Tue Mar 31 2020 20:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86806 * 119.99936 * 2 1 4 4 H 1.48495 * 109.46955 * 270.00189 * 3 2 1 5 5 H 1.48505 * 109.46690 * 30.00312 * 3 2 1 6 6 H 1.48502 * 109.46977 * 149.99882 * 3 2 1 7 7 C 1.38653 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00122 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99975 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00251 * 185.05738 * 9 7 2 11 11 C 1.38873 * 120.06762 * 354.46662 * 10 9 7 12 12 C 1.38099 * 119.93081 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06779 * 0.02562 * 12 11 10 14 14 C 1.50709 * 119.93050 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47277 * 89.99715 * 14 13 12 16 16 C 1.39026 * 120.00253 * 179.72216 * 15 14 13 17 17 C 1.38946 * 119.64920 * 0.02562 * 16 15 14 18 18 C 1.39397 * 118.95720 * 179.75349 * 17 16 15 19 19 C 1.48466 * 120.85979 * 180.21895 * 18 17 16 20 20 N 1.34048 * 126.67246 * 359.97438 * 19 18 17 21 21 N 1.28986 * 107.26906 * 179.87591 * 20 19 18 22 22 N 1.28733 * 108.94236 * 0.39257 * 21 20 19 23 23 H 0.97004 * 125.33943 * 179.76707 * 22 21 20 24 24 N 1.28869 * 109.31744 * 359.75460 * 22 21 20 25 25 C 1.39929 * 118.27962 * 0.50257 * 18 17 16 26 26 C 1.37810 * 119.19891 * 359.73756 * 25 18 17 27 27 N 1.32021 * 120.97018 * 0.02562 * 26 25 18 28 28 C 1.38298 * 120.14009 * 0.24760 * 13 12 11 29 29 C 1.38095 * 120.06857 * 359.45676 * 28 13 12 30 30 H 0.96997 * 120.00145 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.03705 * 0.02562 * 11 10 9 32 32 H 1.08005 * 119.97050 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.46682 * 329.99675 * 14 13 12 34 34 H 1.08994 * 109.46936 * 210.00103 * 14 13 12 35 35 H 0.97008 * 119.99846 * 359.97438 * 15 14 13 36 36 H 1.08000 * 120.52050 * 359.97438 * 17 16 15 37 37 H 1.08006 * 120.40120 * 179.70859 * 25 18 17 38 38 H 1.07992 * 119.51453 * 179.97438 * 26 25 18 39 39 H 1.08002 * 119.97008 * 179.70465 * 28 13 12 40 40 H 1.07996 * 120.03875 * 180.27195 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5046 0.1055 11 6 3.4573 -3.4394 0.0921 12 6 4.2026 -4.5970 0.1997 13 6 3.5689 -5.8204 0.3202 14 6 4.3853 -7.0818 0.4368 15 7 4.6570 -7.3588 1.8494 16 6 5.3938 -8.4818 2.2084 17 6 5.8695 -9.3362 1.2213 18 6 6.6111 -10.4551 1.5972 19 6 7.1438 -11.3934 0.5774 20 7 6.9948 -11.3004 -0.7516 21 7 7.6074 -12.3066 -1.2770 22 7 8.1203 -13.0209 -0.3368 23 1 8.6303 -13.8358 -0.4660 24 7 7.8502 -12.4832 0.8028 25 6 6.8353 -10.6743 2.9609 26 6 6.3247 -9.7816 3.8782 27 7 5.6303 -8.7289 3.4877 28 6 2.1877 -5.8892 0.3282 29 6 1.4368 -4.7346 0.2271 30 1 -0.4850 0.8400 0.0004 31 1 3.9527 -2.4844 -0.0024 32 1 5.2814 -4.5471 0.1889 33 1 5.3275 -6.9554 -0.0965 34 1 3.8314 -7.9144 0.0032 35 1 4.3197 -6.7607 2.5346 36 1 5.6708 -9.1347 0.1791 37 1 7.4014 -11.5331 3.2906 38 1 6.4943 -9.9461 4.9320 39 1 1.6957 -6.8465 0.4176 40 1 0.3583 -4.7885 0.2378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609496025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:58 Heat of formation + Delta-G solvation = 145.262526 kcal Electronic energy + Delta-G solvation = -26265.021890 eV Core-core repulsion = 22275.898399 eV Total energy + Delta-G solvation = -3989.123491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.50923 -41.20739 -40.76267 -38.68742 -36.62331 -35.62110 -34.90526 -34.30380 -32.48648 -32.07057 -31.78821 -29.88548 -27.60814 -26.37914 -26.10882 -25.55372 -23.64508 -23.60126 -22.59359 -21.99546 -20.35214 -19.86367 -18.89885 -18.49935 -18.18064 -17.80054 -16.64015 -16.52413 -16.35116 -15.97985 -15.85223 -15.56631 -15.48666 -15.26365 -15.13601 -14.75694 -14.60387 -14.34582 -14.23465 -13.73172 -13.43847 -13.38934 -13.05098 -12.81064 -12.60254 -12.48542 -12.37843 -12.30570 -12.20545 -12.16583 -12.11075 -11.22442 -11.00606 -10.81258 -10.47198 -10.34991 -9.80112 -9.01585 -8.62699 -8.48224 -6.16504 -0.35642 0.16006 0.43773 0.55386 0.59168 1.35518 1.37034 1.38067 1.44037 1.52779 2.17048 2.26578 2.57373 2.86898 2.99747 3.10953 3.19664 3.49401 3.80405 3.90337 4.00986 4.04676 4.16072 4.19768 4.22250 4.39688 4.45136 4.48355 4.57946 4.71546 4.81647 4.83153 4.92439 5.05211 5.14795 5.27704 5.30723 5.52643 5.58975 5.62043 5.69887 5.76220 6.01733 6.04443 6.18682 6.66150 6.96527 7.07338 7.24595 7.76048 8.74618 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.022435 B = 0.001819 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.728972 B =15386.905413 C =15792.407513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.230 6.230 10 C 0.122 3.878 11 C -0.246 4.246 12 C -0.045 4.045 13 C -0.181 4.181 14 C 0.190 3.810 15 N -0.716 5.716 16 C 0.398 3.602 17 C -0.208 4.208 18 C 0.060 3.940 19 C 0.204 3.796 20 N -0.288 5.288 21 N -0.056 5.056 22 N -0.197 5.197 23 H 0.496 0.504 24 N -0.279 5.279 25 C -0.199 4.199 26 C 0.152 3.848 27 N -0.560 5.560 28 C -0.043 4.043 29 C -0.207 4.207 30 H 0.273 0.727 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.405 0.595 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.191 0.809 39 H 0.148 0.852 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.721 -26.613 3.499 32.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.136 6.136 10 C 0.071 3.929 11 C -0.265 4.265 12 C -0.064 4.064 13 C -0.182 4.182 14 C 0.067 3.933 15 N -0.348 5.348 16 C 0.162 3.838 17 C -0.236 4.236 18 C 0.049 3.951 19 C -0.076 4.076 20 N -0.160 5.160 21 N -0.051 5.051 22 N -0.048 5.048 23 H 0.356 0.644 24 N -0.132 5.132 25 C -0.223 4.223 26 C -0.006 4.006 27 N -0.278 5.278 28 C -0.061 4.061 29 C -0.226 4.226 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.157 0.843 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.241 0.759 36 H 0.162 0.838 37 H 0.177 0.823 38 H 0.208 0.792 39 H 0.166 0.834 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 18.050 -26.061 3.218 31.865 hybrid contribution 0.243 0.455 -0.214 0.558 sum 18.293 -25.606 3.004 31.613 Atomic orbital electron populations 1.70179 1.08011 1.28844 1.48633 1.26592 0.96850 1.02769 0.95820 0.84592 0.77822 0.74589 0.79261 1.18787 1.19649 1.17655 1.21827 0.92554 0.81355 1.53208 0.87962 1.83945 1.36079 1.12680 1.80904 1.20000 0.91656 0.87954 0.93296 1.21250 0.93022 1.00130 1.12111 1.20967 0.99835 0.90795 0.94761 1.19501 0.93421 0.94376 1.10935 1.20088 0.98548 0.93747 0.80894 1.44834 1.56913 1.24905 1.08138 1.18311 0.89422 0.87372 0.88672 1.21379 1.04838 0.96538 1.00849 1.17357 0.95847 0.91269 0.90649 1.23636 0.98915 0.94070 0.91001 1.76127 1.17874 1.15178 1.06840 1.78914 1.08131 1.00079 1.17992 1.47844 1.34869 1.22310 0.99827 0.64444 1.74887 1.17884 1.10172 1.10270 1.21994 1.05811 1.03664 0.90865 1.22866 0.89470 0.86875 1.01373 1.67191 1.20246 1.23547 1.16839 1.20905 0.93222 0.96953 0.95062 1.20463 1.00071 0.90501 1.11602 0.91809 0.86299 0.84253 0.90270 0.90037 0.75931 0.83753 0.82291 0.79179 0.83440 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.12 13.67 21.61 0.30 -55.83 16 2 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 3 Si 1.02 42.59 29.55 68.60 2.03 44.62 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.41 -23.83 9.49 67.92 0.64 -23.18 16 8 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 9 O -0.23 -13.68 9.76 -22.73 -0.22 -13.90 16 10 C 0.12 5.92 6.65 22.58 0.15 6.07 16 11 C -0.25 -10.33 9.17 22.39 0.21 -10.12 16 12 C -0.05 -1.46 9.69 22.25 0.22 -1.24 16 13 C -0.18 -5.16 5.25 -19.83 -0.10 -5.26 16 14 C 0.19 4.11 5.01 85.64 0.43 4.54 16 15 N -0.72 -16.27 5.72 -348.93 -2.00 -18.27 16 16 C 0.40 9.06 7.65 133.00 1.02 10.08 16 17 C -0.21 -4.36 9.01 22.72 0.20 -4.16 16 18 C 0.06 1.15 5.91 -19.86 -0.12 1.03 16 19 C 0.20 3.85 7.97 137.38 1.09 4.94 16 20 N -0.29 -6.02 12.32 -52.18 -0.64 -6.66 16 21 N -0.06 -0.91 13.47 37.02 0.50 -0.41 16 22 N -0.20 -1.85 7.90 37.02 0.29 -1.56 16 23 H 0.50 -0.53 8.96 -347.53 -3.12 -3.65 16 24 N -0.28 -3.95 12.17 -52.12 -0.63 -4.59 16 25 C -0.20 -3.04 9.79 22.58 0.22 -2.82 16 26 C 0.15 2.46 11.16 84.56 0.94 3.40 16 27 N -0.56 -12.61 10.38 -193.52 -2.01 -14.62 16 28 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16 29 C -0.21 -8.50 9.99 22.39 0.22 -8.27 16 30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.12 5.12 5.64 -2.91 -0.02 5.11 16 32 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 33 H 0.08 1.55 7.88 -2.39 -0.02 1.53 16 34 H 0.08 1.57 7.85 -2.39 -0.02 1.55 16 35 H 0.40 9.87 8.59 -92.70 -0.80 9.08 16 36 H 0.14 2.92 6.61 -2.91 -0.02 2.90 16 37 H 0.16 1.70 7.97 -2.91 -0.02 1.67 16 38 H 0.19 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 40 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -76.25 357.43 0.65 -75.59 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -2.77 Total: 22.56 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 5.81 Total: -26.94 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -4.20 Total: -101.93 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.22 Total: -13.90 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -76.25 0.65 -75.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609496025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.857 kcal (2) G-P(sol) polarization free energy of solvation -76.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds