Wall clock time and date at job start Tue Mar 31 2020 21:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38147 * 120.03482 * 2 1 4 4 C 1.38249 * 120.06522 * 180.02562 * 3 2 1 5 5 C 1.38303 * 120.13436 * 359.97438 * 4 3 2 6 6 C 1.38104 * 120.06311 * 359.74638 * 5 4 3 7 7 C 1.38812 * 120.03269 * 180.02562 * 2 1 3 8 8 N 1.40228 * 120.06198 * 359.96122 * 7 2 1 9 9 C 1.35088 * 126.61275 * 132.82357 * 8 7 2 10 10 C 1.36624 * 106.79079 * 179.97438 * 9 8 7 11 11 C 1.47496 * 125.76882 * 179.97438 * 10 9 8 12 12 O 1.21617 * 119.99966 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00244 * 179.97438 * 11 10 9 14 14 C 1.40550 * 120.00371 * 179.97438 * 13 11 10 15 15 C 1.40662 * 126.08065 * 359.97438 * 14 13 11 16 16 N 1.30912 * 108.38548 * 179.73414 * 15 14 13 17 17 N 1.40062 * 108.41212 * 0.44700 * 16 15 14 18 18 C 1.37316 * 126.07200 * 179.81354 * 17 16 15 19 19 H 1.07999 * 120.00212 * 179.68622 * 18 17 16 20 20 C 1.38993 * 119.99781 * 359.96616 * 18 17 16 21 21 N 1.31287 * 119.99909 * 359.72307 * 20 18 17 22 22 Si 1.86797 * 119.99727 * 179.72442 * 20 18 17 23 23 H 1.48504 * 109.46997 * 89.99896 * 22 20 18 24 24 H 1.48503 * 109.46728 * 209.99760 * 22 20 18 25 25 H 1.48503 * 109.47449 * 329.99895 * 22 20 18 26 26 C 1.35692 * 126.08589 * 180.02562 * 14 13 11 27 27 N 1.34421 * 108.46733 * 0.26213 * 10 9 8 28 28 N 1.28758 * 109.57566 * 359.54855 * 27 10 9 29 29 H 1.09004 * 109.47386 * 264.62917 * 1 2 3 30 30 H 1.09004 * 109.46822 * 24.62482 * 1 2 3 31 31 H 1.09000 * 109.47075 * 144.62331 * 1 2 3 32 32 H 1.07994 * 119.96495 * 0.03554 * 3 2 1 33 33 H 1.08001 * 119.93527 * 180.02562 * 4 3 2 34 34 H 1.08001 * 119.96790 * 180.02562 * 5 4 3 35 35 H 1.07996 * 120.03311 * 180.28032 * 6 5 4 36 36 H 1.08002 * 126.60292 * 359.95561 * 9 8 7 37 37 H 0.97008 * 120.00082 * 0.02562 * 13 11 10 38 38 H 1.07999 * 125.80736 * 0.04163 * 15 14 13 39 39 H 0.96998 * 120.00094 * 180.02562 * 21 20 18 40 40 H 1.07998 * 126.24980 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5809 1.1967 -0.0005 5 6 4.2759 0.0010 -0.0005 6 6 3.5901 -1.1978 0.0053 7 6 2.2017 -1.2018 -0.0005 8 7 1.5026 -2.4173 -0.0003 9 6 1.7394 -3.4831 -0.7958 10 6 0.8261 -4.4405 -0.4552 11 6 0.7100 -5.7776 -1.0668 12 8 1.4704 -6.1073 -1.9569 13 7 -0.2380 -6.6346 -0.6386 14 6 -0.3490 -7.9085 -1.2218 15 6 0.4567 -8.4196 -2.2553 16 7 0.0570 -9.6361 -2.5274 17 7 -1.0219 -9.9451 -1.6893 18 6 -1.7196 -11.1277 -1.6723 19 1 -2.5358 -11.2632 -0.9781 20 6 -1.3715 -12.1525 -2.5443 21 7 -0.3793 -11.9878 -3.3881 22 14 -2.3157 -13.7640 -2.5158 23 1 -3.4592 -13.6845 -3.4599 24 1 -1.4148 -14.8727 -2.9216 25 1 -2.8236 -14.0160 -1.1433 26 6 -1.2532 -8.8639 -0.8887 27 7 0.0472 -3.9556 0.5272 28 7 0.4235 -2.7611 0.8263 29 1 -0.3634 -0.0962 1.0232 30 1 -0.3633 0.9342 -0.4282 31 1 -0.3633 -0.8379 -0.5950 32 1 1.6585 2.1312 0.0006 33 1 4.1194 2.1329 -0.0001 34 1 5.3559 0.0047 -0.0005 35 1 4.1333 -2.1312 0.0099 36 1 2.5033 -3.5629 -1.5551 37 1 -0.8443 -6.3718 0.0716 38 1 1.2703 -7.8989 -2.7384 39 1 -0.1366 -12.7029 -3.9969 40 1 -2.0168 -8.7835 -0.1292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625845228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:15 Heat of formation + Delta-G solvation = 182.099242 kcal Electronic energy + Delta-G solvation = -26838.875360 eV Core-core repulsion = 22851.349229 eV Total energy + Delta-G solvation = -3987.526132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.53087 -39.99353 -39.69244 -38.32189 -34.91182 -34.18443 -33.33312 -33.09898 -31.13007 -30.41078 -30.07547 -27.78762 -27.44149 -25.16432 -24.35777 -23.49836 -22.36213 -21.64819 -20.95915 -20.29598 -19.37993 -18.65057 -17.34313 -16.73961 -16.61287 -16.10049 -15.52633 -15.41471 -15.28575 -15.02110 -14.46705 -14.42556 -14.17564 -14.03453 -13.75560 -13.52255 -13.08717 -12.90783 -12.88379 -12.70483 -12.26366 -12.02389 -11.84247 -11.66140 -11.53029 -11.39010 -11.24297 -10.99672 -10.92974 -10.51234 -10.16151 -9.60348 -9.42230 -9.37703 -9.14374 -9.01872 -8.78723 -8.02903 -6.66086 -6.53134 -4.19514 0.27037 0.72662 1.22505 1.72582 1.77954 2.97404 3.04652 3.07521 3.12441 3.36312 3.56090 3.80415 3.88667 4.10883 4.19876 4.20789 4.43754 4.49023 4.60563 4.69291 4.70707 4.83494 4.95460 5.03399 5.05223 5.10847 5.17460 5.28232 5.32882 5.64324 5.70165 5.81001 5.86731 5.90489 6.09313 6.30109 6.49541 6.51533 6.92454 6.98322 7.12793 7.25963 7.76730 7.89134 8.21519 8.30941 8.63549 8.84675 9.40647 9.69713 10.42933 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.039835 B = 0.001889 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.733876 B =14821.969216 C =15293.174987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.109 4.109 4 C -0.103 4.103 5 C -0.110 4.110 6 C -0.104 4.104 7 C 0.122 3.878 8 N -0.318 5.318 9 C 0.093 3.907 10 C -0.078 4.078 11 C 0.584 3.416 12 O -0.534 6.534 13 N -0.603 5.603 14 C -0.060 4.060 15 C -0.031 4.031 16 N -0.260 5.260 17 N -0.142 5.142 18 C -0.322 4.322 19 H 0.117 0.883 20 C 0.046 3.954 21 N -0.770 5.770 22 Si 0.935 3.065 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.264 1.264 26 C -0.079 4.079 27 N -0.202 5.202 28 N -0.057 5.057 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.207 0.793 37 H 0.405 0.595 38 H 0.177 0.823 39 H 0.275 0.725 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 25.126 6.904 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.060 4.060 3 C -0.127 4.127 4 C -0.121 4.121 5 C -0.129 4.129 6 C -0.125 4.125 7 C 0.032 3.968 8 N -0.098 5.098 9 C -0.060 4.060 10 C -0.217 4.217 11 C 0.367 3.633 12 O -0.411 6.411 13 N -0.243 5.243 14 C -0.166 4.166 15 C -0.206 4.206 16 N -0.091 5.091 17 N 0.090 4.910 18 C -0.454 4.454 19 H 0.134 0.866 20 C -0.171 4.171 21 N -0.397 5.397 22 Si 0.759 3.241 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.230 4.230 27 N -0.077 5.077 28 N -0.036 5.036 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.223 0.777 37 H 0.239 0.761 38 H 0.194 0.806 39 H 0.085 0.915 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.900 24.130 6.472 25.670 hybrid contribution -0.127 -0.032 0.226 0.261 sum 5.773 24.098 6.698 25.669 Atomic orbital electron populations 1.20839 0.89757 1.02971 1.03703 1.19894 0.97129 0.91152 0.97866 1.21026 0.94269 0.97059 1.00357 1.21353 0.94217 0.98594 0.97946 1.21057 1.00513 0.91328 0.99965 1.21157 0.91362 1.00052 0.99912 1.17352 0.90340 0.81982 1.07152 1.47479 1.25205 1.10915 1.26182 1.23442 1.00535 0.85879 0.96182 1.21622 0.99507 0.98751 1.01776 1.16487 0.82019 0.81699 0.83046 1.90709 1.43602 1.76037 1.30751 1.42248 1.32456 1.12668 1.36977 1.17252 1.06297 0.86921 1.06132 1.24123 1.02889 0.94124 0.99511 1.78249 1.02267 1.13241 1.15384 1.44552 1.18498 1.08566 1.19347 1.19882 1.14704 0.88659 1.22186 0.86572 1.25643 0.96272 1.00150 0.95062 1.70214 1.22044 1.32359 1.15042 0.85827 0.79134 0.79815 0.79366 1.19600 1.20110 1.18801 1.21282 1.06133 0.90388 1.05244 1.74656 1.19807 1.02857 1.10335 1.82106 0.99898 1.08303 1.13272 0.89702 0.90964 0.91478 0.84695 0.84988 0.84605 0.84665 0.77670 0.76059 0.80623 0.91482 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 8.86 36.00 0.32 -0.62 16 2 C -0.06 -0.48 5.90 -104.44 -0.62 -1.10 16 3 C -0.11 -0.64 9.67 -39.61 -0.38 -1.03 16 4 C -0.10 -0.51 10.04 -39.55 -0.40 -0.91 16 5 C -0.11 -0.61 10.04 -39.61 -0.40 -1.00 16 6 C -0.10 -0.78 9.65 -39.41 -0.38 -1.16 16 7 C 0.12 1.16 6.26 -83.58 -0.52 0.63 16 8 N -0.32 -3.73 3.14 -10.42 -0.03 -3.76 16 9 C 0.09 1.15 10.97 -16.70 -0.18 0.97 16 10 C -0.08 -1.20 6.99 -83.54 -0.58 -1.78 16 11 C 0.58 10.97 7.79 -12.49 -0.10 10.87 16 12 O -0.53 -11.37 14.01 5.26 0.07 -11.30 16 13 N -0.60 -11.72 5.46 -10.95 -0.06 -11.78 16 14 C -0.06 -1.44 6.90 -83.85 -0.58 -2.01 16 15 C -0.03 -0.82 10.85 -17.03 -0.18 -1.00 16 16 N -0.26 -7.64 10.40 30.80 0.32 -7.32 16 17 N -0.14 -3.96 3.74 -11.40 -0.04 -4.00 16 18 C -0.32 -8.61 10.25 -14.82 -0.15 -8.76 16 19 H 0.12 2.78 7.83 -52.49 -0.41 2.37 16 20 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 21 N -0.77 -21.65 11.81 55.50 0.66 -20.99 16 22 Si 0.93 19.10 29.55 -169.99 -5.02 14.07 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 26 C -0.08 -1.92 11.49 -16.38 -0.19 -2.11 16 27 N -0.20 -3.06 12.03 32.85 0.40 -2.67 16 28 N -0.06 -0.79 12.17 60.35 0.73 -0.05 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 31 H 0.07 0.68 7.22 -51.93 -0.37 0.30 16 32 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 34 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.14 0.88 8.04 -52.49 -0.42 0.45 16 36 H 0.21 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.41 6.76 8.51 -40.82 -0.35 6.41 16 38 H 0.18 4.56 5.91 -52.49 -0.31 4.25 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.15 2.99 8.06 -52.49 -0.42 2.56 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -34.41 357.10 -6.00 -40.41 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -3.96 Total: 9.92 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -4.44 Total: -7.91 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 1.97 Total: -50.57 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.07 Total: -11.30 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.41 -6.00 -40.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625845228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.508 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds