Wall clock time and date at job start Tue Mar 31 2020 21:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38147 * 120.03482 * 2 1 4 4 C 1.38249 * 120.06522 * 180.02562 * 3 2 1 5 5 C 1.38303 * 120.13436 * 359.97438 * 4 3 2 6 6 C 1.38104 * 120.06311 * 359.74638 * 5 4 3 7 7 C 1.38812 * 120.03269 * 180.02562 * 2 1 3 8 8 N 1.40228 * 120.06198 * 359.96122 * 7 2 1 9 9 C 1.35088 * 126.61275 * 132.82357 * 8 7 2 10 10 C 1.36624 * 106.79079 * 179.97438 * 9 8 7 11 11 C 1.47496 * 125.76882 * 179.97438 * 10 9 8 12 12 O 1.21617 * 119.99966 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00244 * 179.97438 * 11 10 9 14 14 C 1.40550 * 120.00371 * 179.97438 * 13 11 10 15 15 C 1.40662 * 126.08065 * 359.97438 * 14 13 11 16 16 N 1.30912 * 108.38548 * 179.73414 * 15 14 13 17 17 N 1.40062 * 108.41212 * 0.44700 * 16 15 14 18 18 C 1.37316 * 126.07200 * 179.81354 * 17 16 15 19 19 H 1.07999 * 120.00212 * 179.68622 * 18 17 16 20 20 C 1.38993 * 119.99781 * 359.96616 * 18 17 16 21 21 N 1.31287 * 119.99909 * 359.72307 * 20 18 17 22 22 Si 1.86797 * 119.99727 * 179.72442 * 20 18 17 23 23 H 1.48504 * 109.46997 * 89.99896 * 22 20 18 24 24 H 1.48503 * 109.46728 * 209.99760 * 22 20 18 25 25 H 1.48503 * 109.47449 * 329.99895 * 22 20 18 26 26 C 1.35692 * 126.08589 * 180.02562 * 14 13 11 27 27 N 1.34421 * 108.46733 * 0.26213 * 10 9 8 28 28 N 1.28758 * 109.57566 * 359.54855 * 27 10 9 29 29 H 1.09004 * 109.47386 * 264.62917 * 1 2 3 30 30 H 1.09004 * 109.46822 * 24.62482 * 1 2 3 31 31 H 1.09000 * 109.47075 * 144.62331 * 1 2 3 32 32 H 1.07994 * 119.96495 * 0.03554 * 3 2 1 33 33 H 1.08001 * 119.93527 * 180.02562 * 4 3 2 34 34 H 1.08001 * 119.96790 * 180.02562 * 5 4 3 35 35 H 1.07996 * 120.03311 * 180.28032 * 6 5 4 36 36 H 1.08002 * 126.60292 * 359.95561 * 9 8 7 37 37 H 0.97008 * 120.00082 * 0.02562 * 13 11 10 38 38 H 1.07999 * 125.80736 * 0.04163 * 15 14 13 39 39 H 0.96998 * 120.00094 * 180.02562 * 21 20 18 40 40 H 1.07998 * 126.24980 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5809 1.1967 -0.0005 5 6 4.2759 0.0010 -0.0005 6 6 3.5901 -1.1978 0.0053 7 6 2.2017 -1.2018 -0.0005 8 7 1.5026 -2.4173 -0.0003 9 6 1.7394 -3.4831 -0.7958 10 6 0.8261 -4.4405 -0.4552 11 6 0.7100 -5.7776 -1.0668 12 8 1.4704 -6.1073 -1.9569 13 7 -0.2380 -6.6346 -0.6386 14 6 -0.3490 -7.9085 -1.2218 15 6 0.4567 -8.4196 -2.2553 16 7 0.0570 -9.6361 -2.5274 17 7 -1.0219 -9.9451 -1.6893 18 6 -1.7196 -11.1277 -1.6723 19 1 -2.5358 -11.2632 -0.9781 20 6 -1.3715 -12.1525 -2.5443 21 7 -0.3793 -11.9878 -3.3881 22 14 -2.3157 -13.7640 -2.5158 23 1 -3.4592 -13.6845 -3.4599 24 1 -1.4148 -14.8727 -2.9216 25 1 -2.8236 -14.0160 -1.1433 26 6 -1.2532 -8.8639 -0.8887 27 7 0.0472 -3.9556 0.5272 28 7 0.4235 -2.7611 0.8263 29 1 -0.3634 -0.0962 1.0232 30 1 -0.3633 0.9342 -0.4282 31 1 -0.3633 -0.8379 -0.5950 32 1 1.6585 2.1312 0.0006 33 1 4.1194 2.1329 -0.0001 34 1 5.3559 0.0047 -0.0005 35 1 4.1333 -2.1312 0.0099 36 1 2.5033 -3.5629 -1.5551 37 1 -0.8443 -6.3718 0.0716 38 1 1.2703 -7.8989 -2.7384 39 1 -0.1366 -12.7029 -3.9969 40 1 -2.0168 -8.7835 -0.1292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625845228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:14 Heat of formation + Delta-G solvation = 159.562010 kcal Electronic energy + Delta-G solvation = -26839.852648 eV Core-core repulsion = 22851.349229 eV Total energy + Delta-G solvation = -3988.503419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.56725 -41.67843 -40.52872 -39.93365 -36.03037 -35.69417 -34.92891 -33.90134 -32.41078 -32.02411 -31.05225 -29.57046 -28.07273 -26.96489 -25.34101 -24.73158 -23.12703 -22.78801 -22.49033 -21.65418 -21.14429 -19.78470 -19.06436 -17.88245 -17.50767 -17.38474 -16.91992 -16.74315 -16.33097 -16.12002 -15.89340 -15.64243 -15.23262 -15.10029 -14.97510 -14.78502 -14.73936 -14.22744 -13.67122 -13.48474 -13.39416 -13.30491 -13.10461 -12.90760 -12.84507 -12.71266 -12.44848 -12.36060 -12.07598 -11.89328 -11.80005 -11.06352 -11.02398 -10.81368 -10.61056 -10.09427 -9.92753 -9.69034 -8.54745 -8.46242 -6.23199 -0.46444 0.24590 0.36972 0.50186 0.88480 1.30350 1.41021 1.58849 1.72718 2.00161 2.05215 2.23505 2.56697 2.60923 2.83590 3.09893 3.11474 3.50618 3.65525 3.73860 3.79894 3.92562 4.08820 4.29997 4.32728 4.44477 4.44945 4.52102 4.59167 4.64044 4.65353 4.87166 5.01028 5.07271 5.12761 5.23912 5.28674 5.31971 5.40488 5.43108 5.49027 5.89902 5.95744 6.28993 6.54564 6.72536 6.79898 7.23318 7.45595 7.67384 8.53275 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.039835 B = 0.001889 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.733876 B =14821.969216 C =15293.174987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 C -0.109 4.109 4 C -0.092 4.092 5 C -0.108 4.108 6 C -0.110 4.110 7 C 0.083 3.917 8 N -0.302 5.302 9 C 0.111 3.889 10 C -0.101 4.101 11 C 0.590 3.410 12 O -0.561 6.561 13 N -0.602 5.602 14 C -0.048 4.048 15 C -0.053 4.053 16 N -0.307 5.307 17 N -0.166 5.166 18 C -0.354 4.354 19 H 0.140 0.860 20 C -0.007 4.007 21 N -0.823 5.823 22 Si 1.020 2.980 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.245 1.245 26 C -0.079 4.079 27 N -0.216 5.216 28 N -0.067 5.067 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.041 0.959 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.232 0.768 37 H 0.419 0.581 38 H 0.174 0.826 39 H 0.277 0.723 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.226 27.460 8.128 29.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 C -0.127 4.127 4 C -0.110 4.110 5 C -0.126 4.126 6 C -0.130 4.130 7 C -0.006 4.006 8 N -0.081 5.081 9 C -0.044 4.044 10 C -0.239 4.239 11 C 0.376 3.624 12 O -0.440 6.440 13 N -0.244 5.244 14 C -0.154 4.154 15 C -0.228 4.228 16 N -0.139 5.139 17 N 0.065 4.935 18 C -0.485 4.485 19 H 0.158 0.842 20 C -0.218 4.218 21 N -0.451 5.451 22 Si 0.839 3.161 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.168 1.168 26 C -0.229 4.229 27 N -0.090 5.090 28 N -0.045 5.045 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.060 0.940 32 H 0.177 0.823 33 H 0.182 0.818 34 H 0.180 0.820 35 H 0.158 0.842 36 H 0.248 0.752 37 H 0.256 0.744 38 H 0.191 0.809 39 H 0.087 0.913 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 6.107 26.538 7.745 28.311 hybrid contribution -0.047 -0.396 -0.098 0.411 sum 6.059 26.141 7.647 27.903 Atomic orbital electron populations 1.20803 0.90182 1.03051 1.02981 1.20061 0.97105 0.91682 0.98563 1.21356 0.94987 0.96994 0.99338 1.21798 0.93955 0.99768 0.95502 1.21438 1.01893 0.90688 0.98624 1.21353 0.90510 1.01351 0.99833 1.17770 0.91233 0.81255 1.10334 1.47581 1.24215 1.11452 1.24807 1.23767 0.99730 0.85184 0.95732 1.21127 1.01587 0.97860 1.03365 1.16873 0.80815 0.82502 0.82209 1.90686 1.44424 1.76927 1.31936 1.42191 1.33401 1.11373 1.37481 1.17310 1.04891 0.88342 1.04814 1.24215 1.03653 0.94079 1.00856 1.78143 1.03904 1.14626 1.17252 1.44840 1.18727 1.09823 1.20081 1.20628 1.15595 0.88922 1.23325 0.84233 1.26887 0.96908 1.04099 0.93936 1.70388 1.24369 1.33924 1.16391 0.84583 0.77327 0.73982 0.80241 1.18867 1.20092 1.16834 1.21958 1.06517 0.89364 1.05072 1.74620 1.20323 1.03462 1.10548 1.82038 1.00946 1.07713 1.13837 0.90360 0.88756 0.94000 0.82292 0.81775 0.81972 0.84173 0.75204 0.74397 0.80906 0.91317 0.79729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 8.86 71.24 0.63 -1.11 16 2 C -0.07 -1.07 5.90 -19.75 -0.12 -1.19 16 3 C -0.11 -0.94 9.67 22.25 0.22 -0.72 16 4 C -0.09 -0.54 10.04 22.29 0.22 -0.32 16 5 C -0.11 -0.81 10.04 22.25 0.22 -0.59 16 6 C -0.11 -1.41 9.65 22.38 0.22 -1.20 16 7 C 0.08 1.47 6.26 38.08 0.24 1.71 16 8 N -0.30 -6.91 3.14 -186.87 -0.59 -7.50 16 9 C 0.11 2.68 10.97 83.81 0.92 3.60 16 10 C -0.10 -3.09 6.99 40.81 0.29 -2.81 16 11 C 0.59 22.51 7.79 86.68 0.67 23.19 16 12 O -0.56 -24.50 14.01 -4.08 -0.06 -24.56 16 13 N -0.60 -23.56 5.46 -306.80 -1.68 -25.24 16 14 C -0.05 -2.29 6.90 37.74 0.26 -2.03 16 15 C -0.05 -2.92 10.85 85.42 0.93 -1.99 16 16 N -0.31 -18.80 10.40 -56.46 -0.59 -19.38 16 17 N -0.17 -9.44 3.74 -190.00 -0.71 -10.15 16 18 C -0.35 -19.08 10.25 84.02 0.86 -18.22 16 19 H 0.14 6.55 7.83 -2.91 -0.02 6.53 16 20 C -0.01 -0.35 5.50 84.96 0.47 0.12 16 21 N -0.82 -47.90 11.81 21.66 0.26 -47.65 16 22 Si 1.02 39.12 29.55 68.60 2.03 41.15 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 24 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 25 H -0.25 -8.57 7.11 99.48 0.71 -7.87 16 26 C -0.08 -3.81 11.49 83.38 0.96 -2.85 16 27 N -0.22 -6.55 12.03 -49.99 -0.60 -7.15 16 28 N -0.07 -1.83 12.17 37.02 0.45 -1.38 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 0.96 8.05 -2.39 -0.02 0.94 16 31 H 0.04 0.85 7.22 -2.39 -0.02 0.83 16 32 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 33 H 0.16 -0.05 8.06 -2.91 -0.02 -0.07 16 34 H 0.16 0.36 8.06 -2.91 -0.02 0.33 16 35 H 0.14 1.57 8.04 -2.91 -0.02 1.55 16 36 H 0.23 4.20 8.06 -2.91 -0.02 4.17 16 37 H 0.42 13.90 8.51 -92.70 -0.79 13.11 16 38 H 0.17 9.46 5.91 -2.91 -0.02 9.44 16 39 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.19 7.23 8.06 -2.91 -0.02 7.21 16 Total: -1.00 -78.91 357.10 5.83 -73.08 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.33 Total: 33.20 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 6.99 Total: -4.41 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -3.45 Total: -118.46 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.06 Total: -24.56 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -78.91 5.83 -73.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625845228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.641 kcal (2) G-P(sol) polarization free energy of solvation -78.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds