Wall clock time and date at job start Tue Mar 31 2020 20:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48501 * 109.47174 * 264.66685 * 3 2 1 5 5 H 1.48498 * 109.46748 * 24.67010 * 3 2 1 6 6 H 1.48498 * 109.46658 * 144.66854 * 3 2 1 7 7 C 1.37878 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00213 * 4.98305 * 7 2 1 9 9 C 1.50703 * 120.00092 * 184.98420 * 7 2 1 10 10 H 1.09002 * 109.46680 * 25.09395 * 9 7 2 11 11 C 1.50691 * 109.47089 * 145.09568 * 9 7 2 12 12 O 1.21284 * 119.99776 * 120.00167 * 11 9 7 13 13 N 1.34777 * 120.00237 * 300.00071 * 11 9 7 14 14 N 1.40102 * 119.99863 * 180.02562 * 13 11 9 15 15 C 1.38393 * 120.00005 * 180.02562 * 14 13 11 16 16 N 1.32913 * 120.77188 * 359.97438 * 15 14 13 17 17 C 1.32044 * 121.19204 * 180.02562 * 16 15 14 18 18 N 1.31641 * 122.46375 * 0.02625 * 17 16 15 19 19 C 1.32898 * 120.64075 * 359.97188 * 18 17 16 20 20 N 1.37195 * 134.91895 * 179.97438 * 19 18 17 21 21 H 0.97001 * 126.27830 * 359.97438 * 20 19 18 22 22 C 1.36320 * 107.44378 * 180.02562 * 20 19 18 23 23 N 1.30139 * 109.97353 * 359.97438 * 22 20 19 24 24 C 1.35468 * 109.44532 * 359.74048 * 23 22 20 25 25 C 1.50696 * 109.47076 * 265.09896 * 9 7 2 26 26 C 1.38237 * 119.99972 * 305.02138 * 25 9 7 27 27 C 1.38235 * 119.99921 * 179.81077 * 26 25 9 28 28 C 1.38236 * 120.00103 * 0.39634 * 27 26 25 29 29 C 1.38236 * 119.99862 * 359.85500 * 28 27 26 30 30 C 1.38232 * 120.00157 * 125.29374 * 25 9 7 31 31 H 0.97002 * 120.00277 * 359.97438 * 1 2 3 32 32 H 0.96992 * 119.99925 * 0.02562 * 13 11 9 33 33 H 0.96998 * 120.00166 * 359.97438 * 14 13 11 34 34 H 1.08004 * 118.76369 * 179.97438 * 17 16 15 35 35 H 1.08001 * 125.01181 * 180.02562 * 22 20 19 36 36 H 1.08000 * 120.00328 * 359.97438 * 26 25 9 37 37 H 1.08007 * 119.99552 * 180.22502 * 27 26 25 38 38 H 1.07995 * 119.99756 * 179.83432 * 28 27 26 39 39 H 1.07992 * 119.99997 * 179.97438 * 29 28 27 40 40 H 1.08000 * 119.99894 * 359.97438 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6093 1.9814 -1.3940 5 1 1.3948 2.6825 0.5844 6 1 3.4858 1.4752 0.8097 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1276 -0.0822 9 6 3.5072 -1.1966 0.1129 10 1 3.8352 -0.2866 0.6152 11 6 3.9488 -2.3972 0.9094 12 8 4.6845 -3.2206 0.4076 13 7 3.5262 -2.5560 2.1793 14 7 3.9372 -3.6720 2.9199 15 6 3.5029 -3.8353 4.2237 16 7 2.6961 -2.9428 4.7886 17 6 2.2770 -3.0902 6.0321 18 7 2.6280 -4.1157 6.7791 19 6 3.4320 -5.0591 6.2999 20 7 3.9713 -6.2177 6.7990 21 1 3.8356 -6.5768 7.6898 22 6 4.7339 -6.7710 5.8138 23 7 4.6932 -6.0251 4.7482 24 6 3.8996 -4.9517 4.9792 25 6 4.1148 -1.2566 -1.2649 26 6 3.7601 -2.2721 -2.1331 27 6 4.3145 -2.3250 -3.3983 28 6 5.2298 -1.3670 -3.7924 29 6 5.5885 -0.3544 -2.9223 30 6 5.0312 -0.2994 -1.6585 31 1 -0.4850 0.8400 0.0004 32 1 2.9376 -1.8977 2.5804 33 1 4.5256 -4.3305 2.5187 34 1 1.6225 -2.3408 6.4522 35 1 5.2892 -7.6929 5.9041 36 1 3.0478 -3.0228 -1.8240 37 1 4.0345 -3.1163 -4.0779 38 1 5.6649 -1.4098 -4.7799 39 1 6.3039 0.3937 -3.2300 40 1 5.3113 0.4917 -0.9787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650831422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:49 Heat of formation + Delta-G solvation = 109.030665 kcal Electronic energy + Delta-G solvation = -27896.914126 eV Core-core repulsion = 23906.219503 eV Total energy + Delta-G solvation = -3990.694623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.53387 -41.25728 -40.28383 -39.51694 -37.49049 -35.59652 -34.71791 -33.43756 -33.09665 -32.32512 -31.62927 -30.18934 -29.06105 -25.71289 -25.29627 -24.59629 -23.39283 -22.84572 -22.67217 -21.54000 -20.26759 -19.68532 -19.14547 -18.38603 -18.32070 -17.51027 -17.12244 -17.08571 -16.39516 -16.17591 -15.88034 -15.77524 -15.63729 -15.48504 -14.91732 -14.88810 -14.68968 -14.44125 -14.14921 -13.83721 -13.56590 -13.45597 -13.01260 -12.71487 -12.70950 -12.08373 -12.01015 -11.97639 -11.64706 -11.50711 -11.46233 -11.02020 -10.72915 -10.66447 -10.21442 -10.17068 -9.64441 -9.40293 -8.66191 -8.34172 -6.44450 -0.23101 0.21015 0.53719 0.67419 0.87811 1.35262 1.42474 1.46861 1.57315 1.65499 1.76889 2.31238 2.64068 2.81282 2.94355 3.00309 3.13213 3.22467 3.66301 3.87132 4.04844 4.10743 4.19022 4.24573 4.32605 4.39542 4.53480 4.56136 4.81102 4.89406 4.89465 5.13813 5.22401 5.31673 5.36557 5.46347 5.69441 5.71086 5.74001 5.93145 6.11260 6.17839 6.27625 6.32865 6.55546 6.59298 6.68439 7.13865 7.20912 7.34197 8.80141 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013670 B = 0.003338 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.819663 B = 8387.242518 C = 9854.845452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.042 3.958 3 Si 0.921 3.079 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.233 1.233 7 C -0.509 4.509 8 H 0.038 0.962 9 C 0.038 3.962 10 H 0.088 0.912 11 C 0.534 3.466 12 O -0.578 6.578 13 N -0.509 5.509 14 N -0.489 5.489 15 C 0.485 3.515 16 N -0.608 5.608 17 C 0.363 3.637 18 N -0.567 5.567 19 C 0.295 3.705 20 N -0.563 5.563 21 H 0.449 0.551 22 C 0.282 3.718 23 N -0.508 5.508 24 C -0.125 4.125 25 C -0.057 4.057 26 C -0.102 4.102 27 C -0.133 4.133 28 C -0.134 4.134 29 C -0.124 4.124 30 C -0.149 4.149 31 H 0.272 0.728 32 H 0.439 0.561 33 H 0.444 0.556 34 H 0.239 0.761 35 H 0.283 0.717 36 H 0.089 0.911 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.723 -7.862 11.241 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.159 4.159 3 Si 0.744 3.256 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.156 1.156 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.015 3.985 10 H 0.105 0.895 11 C 0.322 3.678 12 O -0.456 6.456 13 N -0.256 5.256 14 N -0.214 5.214 15 C 0.234 3.766 16 N -0.339 5.339 17 C 0.073 3.927 18 N -0.293 5.293 19 C 0.051 3.949 20 N -0.180 5.180 21 H 0.293 0.707 22 C -0.006 4.006 23 N -0.228 5.228 24 C -0.253 4.253 25 C -0.059 4.059 26 C -0.121 4.121 27 C -0.151 4.151 28 C -0.152 4.152 29 C -0.142 4.142 30 C -0.167 4.167 31 H 0.081 0.919 32 H 0.283 0.717 33 H 0.289 0.711 34 H 0.254 0.746 35 H 0.298 0.702 36 H 0.107 0.893 37 H 0.152 0.848 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.870 -7.687 10.360 16.869 hybrid contribution -0.510 -0.013 0.738 0.897 sum 10.360 -7.700 11.098 17.023 Atomic orbital electron populations 1.69986 1.08029 1.28610 1.49646 1.25676 0.95279 1.02163 0.92819 0.86125 0.80085 0.79255 0.80107 1.18972 1.20722 1.15619 1.20415 0.87613 0.93858 1.52740 0.94350 1.18381 0.96494 0.93292 0.90311 0.89455 1.21554 0.78256 0.88668 0.79287 1.90600 1.38733 1.46185 1.70093 1.45077 1.51370 1.18159 1.10946 1.43327 1.50860 1.19833 1.07393 1.17915 0.88018 0.87345 0.83371 1.67998 1.18804 1.30750 1.16317 1.25180 0.92150 0.92121 0.83287 1.67432 1.18492 1.04234 1.39130 1.19003 0.95096 0.90600 0.90245 1.42817 1.40463 1.17174 1.17550 0.70669 1.26573 0.93429 0.99823 0.80774 1.70240 1.20098 1.04145 1.28291 1.19503 1.09666 0.99617 0.96482 1.19978 0.94574 0.95120 0.96190 1.20835 0.98939 0.97755 0.94540 1.21354 0.98017 1.00159 0.95594 1.21367 0.98250 0.94845 1.00701 1.21372 1.00320 0.99305 0.93195 1.21255 0.97752 0.99480 0.98256 0.91881 0.71689 0.71116 0.74556 0.70199 0.89258 0.84784 0.83169 0.83263 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.76 13.96 21.45 0.30 -53.46 16 2 C 0.04 2.25 5.47 84.66 0.46 2.71 16 3 Si 0.92 40.12 27.18 68.60 1.86 41.99 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.23 -8.98 6.06 99.48 0.60 -8.38 16 7 C -0.51 -27.07 8.06 25.60 0.21 -26.86 16 8 H 0.04 2.34 8.06 -2.91 -0.02 2.31 16 9 C 0.04 1.74 1.89 -13.04 -0.02 1.72 16 10 H 0.09 3.77 4.89 -2.39 -0.01 3.76 16 11 C 0.53 24.08 7.15 87.65 0.63 24.71 16 12 O -0.58 -27.77 15.21 -3.04 -0.05 -27.81 16 13 N -0.51 -20.83 6.19 -173.54 -1.07 -21.91 16 14 N -0.49 -18.24 6.40 -54.65 -0.35 -18.59 16 15 C 0.49 16.66 7.68 133.46 1.02 17.68 16 16 N -0.61 -19.90 9.51 -196.96 -1.87 -21.77 16 17 C 0.36 9.57 12.25 180.86 2.22 11.78 16 18 N -0.57 -14.69 10.47 -197.89 -2.07 -16.76 16 19 C 0.29 7.38 8.51 133.86 1.14 8.52 16 20 N -0.56 -7.97 6.20 -195.84 -1.21 -9.18 16 21 H 0.45 2.71 8.96 -92.71 -0.83 1.88 16 22 C 0.28 3.80 12.98 179.95 2.34 6.13 16 23 N -0.51 -12.86 11.28 -191.40 -2.16 -15.02 16 24 C -0.13 -3.75 7.17 39.69 0.28 -3.47 16 25 C -0.06 -2.54 4.09 -19.87 -0.08 -2.62 16 26 C -0.10 -4.51 8.25 22.27 0.18 -4.33 16 27 C -0.13 -4.80 10.05 22.27 0.22 -4.58 16 28 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 29 C -0.12 -3.94 10.05 22.27 0.22 -3.72 16 30 C -0.15 -5.67 9.46 22.27 0.21 -5.46 16 31 H 0.27 14.79 8.31 -92.71 -0.77 14.01 16 32 H 0.44 17.93 7.88 -213.33 -1.68 16.25 16 33 H 0.44 16.62 8.02 -213.32 -1.71 14.91 16 34 H 0.24 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.28 0.09 8.06 -2.91 -0.02 0.07 16 36 H 0.09 4.30 7.93 -2.91 -0.02 4.27 16 37 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 39 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 40 H 0.12 4.23 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -77.35 352.07 -0.54 -77.89 By element: Atomic # 1 Polarization: 49.50 SS G_CDS: -3.18 Total: 46.32 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 9.26 Total: 18.30 kcal Atomic # 7 Polarization: -148.25 SS G_CDS: -8.44 Total: -156.69 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.05 Total: -27.81 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.86 Total: 41.99 kcal Total: -77.35 -0.54 -77.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650831422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.922 kcal (2) G-P(sol) polarization free energy of solvation -77.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds