Wall clock time and date at job start Tue Mar 31 2020 20:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99660 * 2 1 4 4 H 1.48506 * 109.46688 * 240.00032 * 3 2 1 5 5 H 1.48498 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46838 * 120.00339 * 3 2 1 7 7 C 1.37873 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00411 * 181.97704 * 7 2 1 9 9 C 1.50700 * 120.00028 * 1.97623 * 7 2 1 10 10 H 1.08994 * 109.47511 * 175.34592 * 9 7 2 11 11 C 1.50700 * 109.47178 * 55.34500 * 9 7 2 12 12 O 1.21284 * 120.00148 * 240.00364 * 11 9 7 13 13 N 1.34777 * 119.99992 * 60.00092 * 11 9 7 14 14 N 1.40106 * 119.99764 * 180.02562 * 13 11 9 15 15 C 1.38385 * 119.99301 * 180.27562 * 14 13 11 16 16 N 1.32901 * 120.77914 * 359.72350 * 15 14 13 17 17 C 1.32051 * 121.19423 * 180.02562 * 16 15 14 18 18 N 1.31641 * 122.45971 * 0.02562 * 17 16 15 19 19 C 1.32885 * 120.64492 * 359.97438 * 18 17 16 20 20 N 1.37200 * 134.92270 * 179.97438 * 19 18 17 21 21 H 0.97001 * 126.27757 * 359.97438 * 20 19 18 22 22 C 1.36322 * 107.44417 * 180.02562 * 20 19 18 23 23 N 1.30140 * 109.97601 * 359.97438 * 22 20 19 24 24 C 1.35470 * 109.44371 * 359.73849 * 23 22 20 25 25 C 1.50702 * 109.47198 * 295.34539 * 9 7 2 26 26 C 1.38238 * 119.99962 * 346.94742 * 25 9 7 27 27 C 1.38237 * 120.00356 * 179.78865 * 26 25 9 28 28 C 1.38238 * 119.99349 * 0.43827 * 27 26 25 29 29 C 1.38240 * 120.00308 * 359.81466 * 28 27 26 30 30 C 1.38231 * 120.00026 * 359.97427 * 29 28 27 31 31 H 0.97003 * 119.99736 * 359.97438 * 1 2 3 32 32 H 0.96994 * 119.99719 * 0.02562 * 13 11 9 33 33 H 0.96996 * 119.99935 * 0.02562 * 14 13 11 34 34 H 1.07997 * 118.76563 * 179.97438 * 17 16 15 35 35 H 1.08000 * 125.00936 * 180.02562 * 22 20 19 36 36 H 1.08002 * 119.99549 * 359.97438 * 26 25 9 37 37 H 1.07987 * 120.00272 * 180.27086 * 27 26 25 38 38 H 1.08003 * 119.99642 * 179.83576 * 28 27 26 39 39 H 1.08001 * 119.99886 * 180.02562 * 29 28 27 40 40 H 1.07999 * 120.00094 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0317 9 6 1.2518 -2.4987 -0.0461 10 1 1.9595 -3.3241 -0.1230 11 6 0.3363 -2.5089 -1.2431 12 8 -0.8609 -2.6288 -1.0900 13 7 0.8478 -2.3846 -2.4838 14 7 -0.0034 -2.3935 -3.5966 15 6 0.5224 -2.2717 -4.8708 16 7 1.8318 -2.1399 -5.0565 17 6 2.3423 -2.0225 -6.2687 18 7 1.5961 -2.0282 -7.3531 19 6 0.2762 -2.1552 -7.2665 20 7 -0.7545 -2.1972 -8.1711 21 1 -0.6747 -2.1328 -9.1356 22 6 -1.9116 -2.3450 -7.4656 23 7 -1.6520 -2.3961 -6.1914 24 6 -0.3152 -2.2905 -5.9989 25 6 0.4359 -2.6522 1.2116 26 6 0.6645 -1.8178 2.2899 27 6 -0.0868 -1.9556 3.4420 28 6 -1.0606 -2.9338 3.5192 29 6 -1.2856 -3.7716 2.4428 30 6 -0.5373 -3.6309 1.2891 31 1 -0.4850 0.8401 0.0004 32 1 1.8052 -2.2890 -2.6063 33 1 -0.9609 -2.4888 -3.4740 34 1 3.4119 -1.9171 -6.3741 35 1 -2.8981 -2.4109 -7.9001 36 1 1.4281 -1.0563 2.2310 37 1 0.0888 -1.3010 4.2827 38 1 -1.6458 -3.0433 4.4203 39 1 -2.0467 -4.5355 2.5030 40 1 -0.7128 -4.2856 0.4484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650831423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:53 Heat of formation + Delta-G solvation = 132.665003 kcal Electronic energy + Delta-G solvation = -28349.608054 eV Core-core repulsion = 24359.938292 eV Total energy + Delta-G solvation = -3989.669761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.123 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.45571 -39.43876 -38.90174 -37.67072 -35.84402 -33.73004 -33.36258 -31.96104 -31.07253 -30.76734 -29.71734 -28.73017 -27.04613 -24.22920 -24.07703 -23.30544 -21.62412 -21.32858 -20.95735 -19.96788 -19.00270 -18.31309 -17.22295 -16.99448 -16.09988 -15.94384 -15.71168 -15.20974 -15.00342 -14.77376 -14.50497 -14.19695 -13.94437 -13.88336 -13.63414 -13.31202 -12.78745 -12.46510 -12.24411 -12.14849 -11.93830 -11.58736 -11.37118 -10.97696 -10.84882 -10.65898 -10.48363 -10.37391 -10.09449 -9.75825 -9.51754 -9.49407 -9.02991 -8.82535 -8.75326 -8.56158 -7.74189 -7.47274 -7.09290 -6.20848 -4.38379 0.92437 1.44845 2.27594 2.48572 2.56291 2.63833 2.71061 3.20334 3.27897 3.28715 3.87273 3.97660 4.07329 4.15872 4.27269 4.32417 4.70282 4.90554 4.95716 5.05503 5.32508 5.59598 5.82859 5.90790 5.96415 6.03124 6.17866 6.36000 6.47652 6.62510 6.66072 6.77468 6.81575 6.97280 7.07314 7.16544 7.34991 7.50585 7.58613 7.62104 7.63831 7.70596 7.91489 8.09840 8.20733 8.34916 8.46885 8.67065 9.29635 9.44219 10.79348 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014089 B = 0.003489 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.923700 B = 8024.346939 C = 9179.982362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.071 3.929 10 H 0.065 0.935 11 C 0.550 3.450 12 O -0.543 6.543 13 N -0.523 5.523 14 N -0.468 5.468 15 C 0.507 3.493 16 N -0.595 5.595 17 C 0.374 3.626 18 N -0.579 5.579 19 C 0.309 3.691 20 N -0.582 5.582 21 H 0.428 0.572 22 C 0.238 3.762 23 N -0.456 5.456 24 C -0.114 4.114 25 C -0.016 4.016 26 C -0.062 4.062 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.144 4.144 30 C -0.100 4.100 31 H 0.267 0.733 32 H 0.432 0.568 33 H 0.446 0.554 34 H 0.204 0.796 35 H 0.223 0.777 36 H 0.130 0.870 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 -4.886 -11.402 12.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.583 4.583 8 H 0.090 0.910 9 C 0.049 3.951 10 H 0.083 0.917 11 C 0.339 3.661 12 O -0.417 6.417 13 N -0.273 5.273 14 N -0.187 5.187 15 C 0.251 3.749 16 N -0.327 5.327 17 C 0.083 3.917 18 N -0.307 5.307 19 C 0.067 3.933 20 N -0.198 5.198 21 H 0.267 0.733 22 C -0.051 4.051 23 N -0.175 5.175 24 C -0.243 4.243 25 C -0.017 4.017 26 C -0.080 4.080 27 C -0.165 4.165 28 C -0.160 4.160 29 C -0.162 4.162 30 C -0.119 4.119 31 H 0.077 0.923 32 H 0.274 0.726 33 H 0.291 0.709 34 H 0.220 0.780 35 H 0.240 0.760 36 H 0.147 0.853 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.445 -4.855 -10.407 11.492 hybrid contribution -0.142 1.371 -1.257 1.865 sum -0.587 -3.484 -11.663 12.187 Atomic orbital electron populations 1.70045 1.05527 1.27404 1.44475 1.25073 0.94867 0.99434 0.94015 0.86662 0.79717 0.82890 0.79027 1.19874 1.21338 1.19770 1.20702 0.93198 0.88405 1.55954 0.90959 1.17777 0.92311 0.98880 0.86172 0.91665 1.21805 0.90113 0.72469 0.81696 1.90580 1.16418 1.49835 1.84820 1.45448 1.07035 1.77980 0.96867 1.43453 1.07775 1.71439 0.96065 1.17670 0.87941 0.86740 0.82508 1.67979 1.09534 1.27994 1.27166 1.24430 0.99646 0.87233 0.80415 1.67315 1.01871 1.26816 1.34710 1.18672 0.88861 0.97883 0.87909 1.42734 1.05303 1.61891 1.09827 0.73256 1.25296 0.91137 1.01802 0.86822 1.70202 1.12953 1.18385 1.15943 1.19392 0.92062 1.19101 0.93723 1.19708 0.94736 0.92601 0.94704 1.21151 0.98450 0.97039 0.91356 1.20997 0.98106 0.99029 0.98384 1.20799 0.99469 0.97666 0.98113 1.20821 1.00571 1.00390 0.94408 1.20978 0.95947 0.98751 0.96189 0.92272 0.72592 0.70862 0.78007 0.76034 0.85260 0.87927 0.88130 0.88019 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.59 10.90 55.43 0.60 -21.98 16 2 C 0.07 1.85 4.01 -17.82 -0.07 1.78 16 3 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.55 -12.86 7.11 -34.44 -0.24 -13.10 16 8 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.07 1.62 2.78 -94.07 -0.26 1.35 16 10 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 11 C 0.55 12.67 5.57 -10.99 -0.06 12.60 16 12 O -0.54 -13.89 13.79 5.55 0.08 -13.82 16 13 N -0.52 -10.72 6.19 31.22 0.19 -10.53 16 14 N -0.47 -9.03 6.40 31.37 0.20 -8.82 16 15 C 0.51 8.96 7.68 -154.66 -1.19 7.77 16 16 N -0.59 -9.75 9.51 -13.61 -0.13 -9.88 16 17 C 0.37 5.13 12.25 -92.06 -1.13 4.00 16 18 N -0.58 -8.19 10.47 -13.90 -0.15 -8.34 16 19 C 0.31 4.37 8.51 -155.81 -1.33 3.05 16 20 N -0.58 -5.61 6.20 -13.25 -0.08 -5.69 16 21 H 0.43 2.49 8.96 -40.82 -0.37 2.12 16 22 C 0.24 2.30 12.98 -89.49 -1.16 1.14 16 23 N -0.46 -6.71 11.28 -11.84 -0.13 -6.84 16 24 C -0.11 -1.86 7.17 -84.54 -0.61 -2.46 16 25 C -0.02 -0.38 4.51 -104.62 -0.47 -0.85 16 26 C -0.06 -1.40 8.21 -39.58 -0.32 -1.73 16 27 C -0.15 -2.99 10.05 -39.58 -0.40 -3.39 16 28 C -0.14 -2.75 10.05 -39.58 -0.40 -3.14 16 29 C -0.14 -2.88 10.05 -39.58 -0.40 -3.27 16 30 C -0.10 -2.21 8.21 -39.58 -0.33 -2.53 16 31 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.43 8.40 7.88 -182.60 -1.44 6.96 16 33 H 0.45 8.91 8.02 -182.60 -1.47 7.44 16 34 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.22 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.13 3.02 6.04 -52.49 -0.32 2.70 16 37 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 39 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.11 2.32 7.01 -52.49 -0.37 1.96 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -32.37 347.19 -13.60 -45.98 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -6.04 Total: 18.73 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -8.36 Total: 1.21 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: 0.51 Total: -72.09 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.37 -13.60 -45.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650831423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.641 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds