Wall clock time and date at job start Tue Mar 31 2020 20:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86808 * 120.00119 * 2 1 4 4 H 1.48499 * 109.46883 * 270.00155 * 3 2 1 5 5 H 1.48506 * 109.46691 * 29.99836 * 3 2 1 6 6 H 1.48496 * 109.47312 * 149.99883 * 3 2 1 7 7 C 1.38801 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99380 * 0.02562 * 7 2 1 9 9 S 1.76194 * 120.00163 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00068 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.47025 * 125.64993 * 359.68696 * 13 11 10 15 15 C 1.54329 * 107.26818 * 178.85193 * 14 13 11 16 16 C 1.55158 * 103.02014 * 338.13889 * 15 14 13 17 17 H 1.08998 * 111.00419 * 277.23255 * 16 15 14 18 18 N 1.46899 * 111.00324 * 153.37932 * 16 15 14 19 19 C 1.46900 * 110.99895 * 161.35107 * 18 16 15 20 20 C 1.50700 * 109.47126 * 180.02562 * 19 18 16 21 21 C 1.38247 * 119.97751 * 269.72286 * 20 19 18 22 22 C 1.38197 * 120.02821 * 179.76682 * 21 20 19 23 23 C 1.38455 * 119.97150 * 0.50672 * 22 21 20 24 24 F 1.35102 * 120.02263 * 179.76749 * 23 22 21 25 25 C 1.38451 * 119.95137 * 359.74912 * 23 22 21 26 26 C 1.38200 * 119.97610 * 359.97438 * 25 23 22 27 27 C 1.47429 * 125.64908 * 179.97438 * 13 11 10 28 28 H 0.97001 * 120.00241 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47013 * 300.00500 * 10 9 7 30 30 H 1.09004 * 109.47116 * 59.99987 * 10 9 7 31 31 H 1.09005 * 109.88144 * 298.39827 * 14 13 11 32 32 H 1.08999 * 109.88386 * 59.55785 * 14 13 11 33 33 H 1.08999 * 110.85038 * 219.67161 * 15 14 13 34 34 H 1.09004 * 110.67048 * 96.52167 * 15 14 13 35 35 H 1.00905 * 111.00020 * 37.39607 * 18 16 15 36 36 H 1.09002 * 109.46899 * 300.00037 * 19 18 16 37 37 H 1.08997 * 109.47131 * 60.00448 * 19 18 16 38 38 H 1.08002 * 119.98427 * 0.02777 * 21 20 19 39 39 H 1.08003 * 120.01362 * 180.25693 * 22 21 20 40 40 H 1.08003 * 120.01533 * 179.97438 * 25 23 22 41 41 H 1.07996 * 119.98849 * 180.02562 * 26 25 23 42 42 H 1.08994 * 110.36580 * 322.92629 * 27 13 11 43 43 H 1.09001 * 110.36419 * 85.14116 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7722 -1.2019 -0.0001 10 6 4.0866 -2.9844 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2962 -0.0003 13 7 6.0457 -4.4946 -0.0001 14 6 5.2274 -5.7160 0.0060 15 6 6.1964 -6.9168 -0.0264 16 6 7.4952 -6.3021 -0.6117 17 1 7.4518 -6.2605 -1.7000 18 7 8.6791 -7.0466 -0.1622 19 6 9.8336 -6.7723 -1.0281 20 6 11.0261 -7.5521 -0.5373 21 6 11.8862 -6.9899 0.3876 22 6 12.9773 -7.7059 0.8419 23 6 13.2150 -8.9829 0.3626 24 9 14.2841 -9.6820 0.8026 25 6 12.3560 -9.5430 -0.5676 26 6 11.2622 -8.8273 -1.0163 27 6 7.4690 -4.8791 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 3.6440 -3.4313 0.8904 30 1 3.6434 -3.4317 -0.8896 31 1 4.6206 -5.7512 0.9108 32 1 4.5852 -5.7364 -0.8745 33 1 5.8159 -7.7049 -0.6761 34 1 6.3698 -7.2986 0.9797 35 1 8.4881 -8.0364 -0.1168 36 1 9.6003 -7.0708 -2.0501 37 1 10.0610 -5.7066 -1.0037 38 1 11.7028 -5.9922 0.7583 39 1 13.6467 -7.2680 1.5676 40 1 12.5406 -10.5389 -0.9425 41 1 10.5918 -9.2642 -1.7416 42 1 8.0476 -4.1909 -0.6166 43 1 7.8580 -4.8946 1.0176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661285222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:51 Heat of formation + Delta-G solvation = -51.122660 kcal Electronic energy + Delta-G solvation = -25063.484362 eV Core-core repulsion = 21149.076208 eV Total energy + Delta-G solvation = -3914.408154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.30459 -40.08741 -39.56793 -37.73370 -35.40707 -32.44669 -32.12133 -31.60876 -30.27604 -29.75971 -27.66954 -25.65383 -25.32091 -23.52587 -23.16397 -21.70988 -21.03772 -19.45110 -18.12026 -17.75704 -17.04079 -16.73940 -16.69124 -16.26304 -16.00708 -15.37653 -15.17000 -15.02079 -14.80355 -14.55444 -14.15127 -14.03803 -13.92954 -13.69307 -13.59939 -13.23161 -12.85913 -12.71741 -12.64815 -12.56178 -12.15038 -11.93550 -11.60761 -11.46581 -11.41069 -11.26435 -11.09353 -11.00811 -10.61498 -9.86339 -9.58107 -9.54794 -9.16169 -9.00765 -8.91472 -8.57420 -8.50325 -6.92622 -6.29377 -4.01212 0.62951 0.76703 2.65591 2.93620 3.02699 3.19776 3.32974 3.50606 3.58306 3.80836 3.83468 4.06428 4.22306 4.31459 4.33064 4.39347 4.44838 4.65997 4.70066 4.75091 4.78445 4.98987 5.06683 5.09747 5.13554 5.19078 5.22281 5.42351 5.44051 5.52319 5.53947 5.63580 5.65335 5.68880 5.75011 5.79422 5.84741 6.00839 6.04221 6.28173 6.40612 6.55134 6.84741 7.56452 7.93592 8.40886 8.42745 9.16845 10.79783 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033940 B = 0.001699 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.776510 B =16478.968946 C =17057.629365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.117 4.117 11 C 0.548 3.452 12 O -0.518 6.518 13 N -0.625 5.625 14 C 0.103 3.897 15 C -0.131 4.131 16 C 0.071 3.929 17 H 0.063 0.937 18 N -0.672 5.672 19 C 0.096 3.904 20 C -0.093 4.093 21 C -0.066 4.066 22 C -0.154 4.154 23 C 0.097 3.903 24 F -0.141 7.141 25 C -0.155 4.155 26 C -0.085 4.085 27 C 0.120 3.880 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.347 0.653 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.073 0.927 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.650 -22.670 -1.773 32.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.268 4.268 11 C 0.336 3.664 12 O -0.392 6.392 13 N -0.363 5.363 14 C -0.020 4.020 15 C -0.169 4.169 16 C -0.040 4.040 17 H 0.081 0.919 18 N -0.304 5.304 19 C -0.032 4.032 20 C -0.094 4.094 21 C -0.085 4.085 22 C -0.173 4.173 23 C 0.077 3.923 24 F -0.120 7.120 25 C -0.174 4.174 26 C -0.104 4.104 27 C -0.004 4.004 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.166 0.834 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.092 0.908 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 23.787 -20.634 -1.294 31.517 hybrid contribution -0.878 -1.097 -0.710 1.574 sum 22.909 -21.732 -2.003 31.640 Atomic orbital electron populations 1.69934 1.05906 1.27767 1.48060 1.24705 0.94444 0.98948 0.93158 0.86740 0.81930 0.83285 0.79939 1.19210 1.19919 1.15902 1.22309 0.88223 0.97541 1.58816 0.89389 1.84791 1.09328 1.00068 1.97422 1.23253 0.93673 1.04202 1.05671 1.19976 0.90554 0.80597 0.75280 1.90707 1.58888 1.41190 1.48440 1.48395 1.07079 1.05283 1.75548 1.21972 0.94090 0.83463 1.02525 1.22788 0.94100 0.97214 1.02780 1.22692 0.89337 0.94238 0.97695 0.91862 1.60359 1.03757 1.13445 1.52843 1.20955 0.88025 1.00250 0.93963 1.19836 0.96837 0.94763 0.97914 1.20975 0.92527 1.00138 0.94829 1.21208 1.00052 0.93575 1.02450 1.17774 0.86039 0.91168 0.97286 1.91507 1.53590 1.78648 1.88265 1.21114 0.95933 1.01470 0.98873 1.20924 0.96556 0.93688 0.99186 1.22081 0.82700 0.93943 1.01671 0.91939 0.88519 0.88605 0.90833 0.91081 0.89997 0.89427 0.83389 0.93766 0.89483 0.84596 0.84633 0.84785 0.85207 0.90815 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.79 27.74 -169.99 -4.72 17.08 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16 8 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 10 C -0.12 -2.31 5.35 36.00 0.19 -2.12 16 11 C 0.55 10.10 7.87 -10.99 -0.09 10.02 16 12 O -0.52 -11.49 16.12 5.56 0.09 -11.40 16 13 N -0.63 -8.51 3.33 -170.52 -0.57 -9.08 16 14 C 0.10 1.01 6.49 -3.06 -0.02 0.99 16 15 C -0.13 -0.88 6.42 -24.89 -0.16 -1.04 16 16 C 0.07 0.54 3.32 -65.57 -0.22 0.32 16 17 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 18 N -0.67 -4.24 6.36 -105.74 -0.67 -4.91 16 19 C 0.10 0.57 5.68 -4.98 -0.03 0.54 16 20 C -0.09 -0.57 5.39 -104.62 -0.56 -1.14 16 21 C -0.07 -0.44 9.70 -39.59 -0.38 -0.82 16 22 C -0.15 -1.07 10.03 -39.52 -0.40 -1.46 16 23 C 0.10 0.74 7.30 -39.42 -0.29 0.45 16 24 F -0.14 -1.24 17.27 2.25 0.04 -1.20 16 25 C -0.16 -0.97 10.03 -39.52 -0.40 -1.37 16 26 C -0.08 -0.47 9.70 -39.59 -0.38 -0.85 16 27 C 0.12 1.35 6.55 -2.54 -0.02 1.34 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 30 H 0.10 1.76 8.14 -51.91 -0.42 1.33 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.35 1.75 8.52 -39.29 -0.33 1.42 16 36 H 0.04 0.23 8.04 -51.93 -0.42 -0.19 16 37 H 0.09 0.57 8.08 -51.93 -0.42 0.15 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 41 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 42 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -34.28 379.81 -10.08 -44.37 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.23 Total: -2.08 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.53 Total: -7.15 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: -0.46 Total: -39.71 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.72 Total: 17.08 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.28 -10.08 -44.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661285222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.757 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds