Wall clock time and date at job start Tue Mar 31 2020 20:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86808 * 120.00119 * 2 1 4 4 H 1.48499 * 109.46883 * 270.00155 * 3 2 1 5 5 H 1.48506 * 109.46691 * 29.99836 * 3 2 1 6 6 H 1.48496 * 109.47312 * 149.99883 * 3 2 1 7 7 C 1.38801 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99380 * 0.02562 * 7 2 1 9 9 S 1.76194 * 120.00163 * 179.97438 * 7 2 1 10 10 C 1.81000 * 100.00068 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.47025 * 125.64993 * 359.68696 * 13 11 10 15 15 C 1.54329 * 107.26818 * 178.85193 * 14 13 11 16 16 C 1.55158 * 103.02014 * 338.13889 * 15 14 13 17 17 H 1.08998 * 111.00419 * 277.23255 * 16 15 14 18 18 N 1.46899 * 111.00324 * 153.37932 * 16 15 14 19 19 C 1.46900 * 110.99895 * 161.35107 * 18 16 15 20 20 C 1.50700 * 109.47126 * 180.02562 * 19 18 16 21 21 C 1.38247 * 119.97751 * 269.72286 * 20 19 18 22 22 C 1.38197 * 120.02821 * 179.76682 * 21 20 19 23 23 C 1.38455 * 119.97150 * 0.50672 * 22 21 20 24 24 F 1.35102 * 120.02263 * 179.76749 * 23 22 21 25 25 C 1.38451 * 119.95137 * 359.74912 * 23 22 21 26 26 C 1.38200 * 119.97610 * 359.97438 * 25 23 22 27 27 C 1.47429 * 125.64908 * 179.97438 * 13 11 10 28 28 H 0.97001 * 120.00241 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47013 * 300.00500 * 10 9 7 30 30 H 1.09004 * 109.47116 * 59.99987 * 10 9 7 31 31 H 1.09005 * 109.88144 * 298.39827 * 14 13 11 32 32 H 1.08999 * 109.88386 * 59.55785 * 14 13 11 33 33 H 1.08999 * 110.85038 * 219.67161 * 15 14 13 34 34 H 1.09004 * 110.67048 * 96.52167 * 15 14 13 35 35 H 1.00905 * 111.00020 * 37.39607 * 18 16 15 36 36 H 1.09002 * 109.46899 * 300.00037 * 19 18 16 37 37 H 1.08997 * 109.47131 * 60.00448 * 19 18 16 38 38 H 1.08002 * 119.98427 * 0.02777 * 21 20 19 39 39 H 1.08003 * 120.01362 * 180.25693 * 22 21 20 40 40 H 1.08003 * 120.01533 * 179.97438 * 25 23 22 41 41 H 1.07996 * 119.98849 * 180.02562 * 26 25 23 42 42 H 1.08994 * 110.36580 * 322.92629 * 27 13 11 43 43 H 1.09001 * 110.36419 * 85.14116 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7722 -1.2019 -0.0001 10 6 4.0866 -2.9844 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2962 -0.0003 13 7 6.0457 -4.4946 -0.0001 14 6 5.2274 -5.7160 0.0060 15 6 6.1964 -6.9168 -0.0264 16 6 7.4952 -6.3021 -0.6117 17 1 7.4518 -6.2605 -1.7000 18 7 8.6791 -7.0466 -0.1622 19 6 9.8336 -6.7723 -1.0281 20 6 11.0261 -7.5521 -0.5373 21 6 11.8862 -6.9899 0.3876 22 6 12.9773 -7.7059 0.8419 23 6 13.2150 -8.9829 0.3626 24 9 14.2841 -9.6820 0.8026 25 6 12.3560 -9.5430 -0.5676 26 6 11.2622 -8.8273 -1.0163 27 6 7.4690 -4.8791 -0.0005 28 1 -0.4850 0.8400 0.0004 29 1 3.6440 -3.4313 0.8904 30 1 3.6434 -3.4317 -0.8896 31 1 4.6206 -5.7512 0.9108 32 1 4.5852 -5.7364 -0.8745 33 1 5.8159 -7.7049 -0.6761 34 1 6.3698 -7.2986 0.9797 35 1 8.4881 -8.0364 -0.1168 36 1 9.6003 -7.0708 -2.0501 37 1 10.0610 -5.7066 -1.0037 38 1 11.7028 -5.9922 0.7583 39 1 13.6467 -7.2680 1.5676 40 1 12.5406 -10.5389 -0.9425 41 1 10.5918 -9.2642 -1.7416 42 1 8.0476 -4.1909 -0.6166 43 1 7.8580 -4.8946 1.0176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661285222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:50 Heat of formation + Delta-G solvation = -73.231857 kcal Electronic energy + Delta-G solvation = -25064.443088 eV Core-core repulsion = 21149.076208 eV Total energy + Delta-G solvation = -3915.366880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.89724 -41.11418 -40.16540 -38.78621 -36.16255 -34.67873 -32.95912 -32.06562 -31.24609 -30.76684 -28.62557 -27.83248 -25.99828 -24.02799 -23.98506 -22.22199 -21.73473 -20.74514 -19.63216 -18.63629 -18.14760 -17.74890 -17.34932 -17.14061 -16.86584 -16.60145 -16.52371 -16.11309 -15.74184 -15.62185 -15.14981 -14.91168 -14.80303 -14.50951 -14.43603 -14.30866 -14.22739 -13.83354 -13.49446 -13.33802 -13.19446 -13.13493 -13.01547 -12.75032 -12.67195 -12.17406 -12.03996 -11.91266 -11.87340 -11.72301 -11.17522 -11.05057 -10.54899 -10.04247 -9.75488 -9.64854 -9.39152 -9.01711 -8.51962 -6.23365 0.12840 0.30724 0.95535 1.30968 1.44989 1.50093 1.52893 2.02863 2.24767 2.56598 2.67698 2.86255 3.25679 3.31567 3.35169 3.68408 3.76529 3.78481 3.88691 4.00326 4.09888 4.18231 4.24710 4.32294 4.35700 4.39974 4.48219 4.62683 4.68634 4.71134 4.82425 4.92073 4.98891 5.01255 5.06971 5.16311 5.19026 5.28618 5.30782 5.57781 5.70322 5.91607 5.99841 6.10717 6.32455 6.46729 6.93170 7.04359 8.60280 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033940 B = 0.001699 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.776510 B =16478.968946 C =17057.629365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.177 6.177 10 C -0.102 4.102 11 C 0.546 3.454 12 O -0.566 6.566 13 N -0.616 5.616 14 C 0.090 3.910 15 C -0.117 4.117 16 C 0.086 3.914 17 H 0.071 0.929 18 N -0.674 5.674 19 C 0.100 3.900 20 C -0.094 4.094 21 C -0.077 4.077 22 C -0.163 4.163 23 C 0.074 3.926 24 F -0.153 7.153 25 C -0.157 4.157 26 C -0.080 4.080 27 C 0.114 3.886 28 H 0.277 0.723 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.359 0.641 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.057 0.943 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.215 -24.592 -2.444 33.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.050 5.950 10 C -0.252 4.252 11 C 0.334 3.666 12 O -0.445 6.445 13 N -0.351 5.351 14 C -0.033 4.033 15 C -0.154 4.154 16 C -0.025 4.025 17 H 0.089 0.911 18 N -0.307 5.307 19 C -0.029 4.029 20 C -0.094 4.094 21 C -0.095 4.095 22 C -0.181 4.181 23 C 0.054 3.946 24 F -0.132 7.132 25 C -0.176 4.176 26 C -0.099 4.099 27 C -0.009 4.009 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.181 0.819 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.076 0.924 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.351 -22.631 -1.962 33.302 hybrid contribution -1.020 -0.679 -0.494 1.321 sum 23.331 -23.310 -2.455 33.071 Atomic orbital electron populations 1.70006 1.07226 1.29030 1.49027 1.25533 0.95261 1.02156 0.92849 0.85890 0.80672 0.79707 0.80248 1.18642 1.18226 1.16223 1.22437 0.90053 0.96757 1.58403 0.91854 1.84732 1.06668 1.06033 1.97577 1.23197 0.95383 0.99546 1.07099 1.19665 0.89489 0.81828 0.75595 1.90684 1.59476 1.43082 1.51227 1.48349 1.08939 1.04847 1.72927 1.22359 0.94792 0.82813 1.03297 1.22778 0.92427 0.96298 1.03940 1.22497 0.90372 0.91873 0.97749 0.91142 1.60230 1.03277 1.14177 1.53053 1.20921 0.87687 0.99664 0.94605 1.19932 0.96743 0.95120 0.97642 1.21107 0.92721 1.00408 0.95281 1.21337 1.00428 0.93608 1.02761 1.18063 0.86425 0.91654 0.98415 1.91473 1.54244 1.78908 1.88559 1.21358 0.95735 1.02219 0.98283 1.21182 0.96424 0.93192 0.99082 1.22259 0.80891 0.96231 1.01516 0.91333 0.87169 0.87031 0.90328 0.90081 0.86977 0.88713 0.81950 0.92281 0.90531 0.84312 0.84098 0.83309 0.82672 0.92407 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.51 13.97 21.65 0.30 -55.20 16 2 C 0.05 2.79 5.50 84.86 0.47 3.26 16 3 Si 0.91 45.07 27.74 68.60 1.90 46.97 16 4 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.24 -11.81 6.74 99.48 0.67 -11.14 16 7 C -0.53 -30.85 10.04 67.95 0.68 -30.17 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 10 C -0.10 -3.93 5.35 71.24 0.38 -3.55 16 11 C 0.55 19.84 7.87 87.66 0.69 20.53 16 12 O -0.57 -25.35 16.12 -3.04 -0.05 -25.40 16 13 N -0.62 -15.80 3.33 -811.80 -2.70 -18.50 16 14 C 0.09 1.49 6.49 86.73 0.56 2.05 16 15 C -0.12 -1.09 6.42 31.78 0.20 -0.89 16 16 C 0.09 1.03 3.32 46.30 0.15 1.18 16 17 H 0.07 0.81 7.92 -2.39 -0.02 0.79 16 18 N -0.67 -6.42 6.36 -488.44 -3.11 -9.53 16 19 C 0.10 0.92 5.68 85.56 0.49 1.41 16 20 C -0.09 -0.96 5.39 -19.86 -0.11 -1.07 16 21 C -0.08 -0.94 9.70 22.26 0.22 -0.73 16 22 C -0.16 -2.20 10.03 22.31 0.22 -1.97 16 23 C 0.07 1.09 7.30 22.37 0.16 1.25 16 24 F -0.15 -2.67 17.27 44.97 0.78 -1.90 16 25 C -0.16 -1.70 10.03 22.31 0.22 -1.48 16 26 C -0.08 -0.67 9.70 22.26 0.22 -0.45 16 27 C 0.11 2.42 6.55 86.85 0.57 2.99 16 28 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 30 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 31 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.36 2.18 8.52 -89.69 -0.76 1.41 16 36 H 0.06 0.40 8.04 -2.39 -0.02 0.38 16 37 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 38 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 41 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 42 H 0.06 1.42 8.04 -2.39 -0.02 1.40 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -75.67 379.81 1.43 -74.24 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.22 Total: 7.04 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 5.13 Total: -7.63 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -5.51 Total: -83.23 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.90 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.90 Total: 46.97 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -75.67 1.43 -74.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661285222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.009 kcal (2) G-P(sol) polarization free energy of solvation -75.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds