Wall clock time and date at job start Tue Mar 31 2020 20:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99825 * 2 1 4 4 H 1.48499 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47239 * 300.00444 * 3 2 1 6 6 H 1.48498 * 109.46784 * 60.00201 * 3 2 1 7 7 C 1.38797 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99769 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00257 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47135 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99946 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99687 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99892 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47130 * 180.02562 * 14 13 11 16 16 C 1.53935 * 113.73564 * 86.23324 * 15 14 13 17 17 N 1.48296 * 86.06285 * 138.12918 * 16 15 14 18 18 C 1.46902 * 111.00409 * 222.41947 * 17 16 15 19 19 C 1.50702 * 109.47215 * 269.34877 * 18 17 16 20 20 C 1.38259 * 119.99087 * 269.73250 * 19 18 17 21 21 C 1.38220 * 120.05335 * 179.72777 * 20 19 18 22 22 C 1.38225 * 120.02520 * 0.53931 * 21 20 19 23 23 C 1.38440 * 119.96968 * 359.73157 * 22 21 20 24 24 F 1.35104 * 120.02049 * 180.02562 * 23 22 21 25 25 C 1.38180 * 119.98316 * 89.99999 * 19 18 17 26 26 C 1.47961 * 90.75572 * 335.31010 * 17 16 15 27 27 H 0.97004 * 120.00791 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46889 * 59.99679 * 10 9 7 29 29 H 1.09007 * 109.46550 * 300.00163 * 10 9 7 30 30 H 0.96992 * 120.00176 * 0.02562 * 13 11 10 31 31 H 1.09002 * 109.47069 * 59.99899 * 14 13 11 32 32 H 1.09006 * 109.47047 * 300.00275 * 14 13 11 33 33 H 1.09002 * 112.93723 * 314.66502 * 15 14 13 34 34 H 1.09001 * 113.76001 * 252.50503 * 16 15 14 35 35 H 1.09000 * 113.75996 * 23.86319 * 16 15 14 36 36 H 1.09001 * 109.47358 * 29.35236 * 18 17 16 37 37 H 1.09004 * 109.47314 * 149.35402 * 18 17 16 38 38 H 1.08006 * 119.97249 * 359.97029 * 20 19 18 39 39 H 1.08008 * 119.99085 * 180.27124 * 21 20 19 40 40 H 1.07991 * 120.01337 * 179.70801 * 22 21 20 41 41 H 1.07999 * 120.01408 * 0.02562 * 25 19 18 42 42 H 1.09007 * 113.75652 * 270.36911 * 26 17 16 43 43 H 1.08993 * 113.76177 * 139.00817 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2019 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5022 -0.0021 13 7 2.8443 -6.3430 -0.0018 14 6 2.3306 -7.7150 -0.0019 15 6 3.5027 -8.6984 -0.0020 16 6 4.0369 -9.0259 1.4041 17 7 4.1221 -10.4295 0.9334 18 6 3.6442 -11.3606 1.9643 19 6 4.8009 -11.7872 2.8310 20 6 5.5385 -12.9078 2.4967 21 6 6.6032 -13.2970 3.2876 22 6 6.9247 -12.5725 4.4200 23 6 6.1834 -11.4535 4.7588 24 9 6.4971 -10.7443 5.8651 25 6 5.1204 -11.0613 3.9626 26 6 3.0729 -10.1746 -0.0783 27 1 -0.4851 0.8400 -0.0004 28 1 3.1245 -3.7312 0.8894 29 1 3.1245 -3.7312 -0.8906 30 1 3.8010 -6.1834 -0.0015 31 1 1.7215 -7.8749 -0.8916 32 1 1.7223 -7.8753 0.8884 33 1 4.2816 -8.4309 -0.7160 34 1 5.0048 -8.5745 1.6222 35 1 3.3062 -8.8725 2.1982 36 1 2.8920 -10.8666 2.5795 37 1 3.2052 -12.2368 1.4873 38 1 5.2850 -13.4772 1.6147 39 1 7.1814 -14.1701 3.0231 40 1 7.7537 -12.8795 5.0404 41 1 4.5412 -10.1887 4.2261 42 1 2.0607 -10.3566 0.2833 43 1 3.2710 -10.6404 -1.0435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713887416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:12 Heat of formation + Delta-G solvation = -25.557442 kcal Electronic energy + Delta-G solvation = -24866.133351 eV Core-core repulsion = 20952.833789 eV Total energy + Delta-G solvation = -3913.299563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.23240 -40.74031 -39.34150 -38.80899 -34.76557 -33.06986 -32.43369 -31.00981 -30.41667 -28.88248 -26.62397 -26.36548 -25.45542 -23.45492 -23.08657 -21.50567 -20.62165 -19.82685 -17.92498 -17.66721 -16.85179 -16.58752 -16.44223 -16.43898 -16.11735 -15.87284 -15.35569 -15.00300 -14.86324 -14.80613 -14.50561 -13.96862 -13.81754 -13.61902 -13.16249 -13.12131 -12.94442 -12.72024 -12.59708 -12.41108 -11.92537 -11.88628 -11.62539 -11.48617 -11.16357 -11.07462 -11.02371 -10.93727 -10.75621 -9.81337 -9.53399 -9.39065 -9.23965 -9.08322 -9.06892 -8.89972 -8.23819 -6.50592 -6.22283 -3.92790 0.72368 0.77936 3.00706 3.07265 3.08522 3.21351 3.27796 3.32322 3.55534 3.66295 3.84041 4.06532 4.19944 4.24332 4.26563 4.36208 4.57572 4.69176 4.76966 4.91058 4.92237 4.94200 4.96134 5.09108 5.13043 5.18609 5.26349 5.34574 5.40444 5.46807 5.58473 5.60694 5.67096 5.73120 5.78085 5.88354 5.90268 5.93784 6.08250 6.13657 6.45627 6.53375 6.59888 7.59552 7.68859 8.35042 8.59662 9.23271 10.85198 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.001739 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.900686 B =16093.418217 C =17215.525903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.738 5.738 14 C 0.130 3.870 15 C -0.126 4.126 16 C 0.005 3.995 17 N -0.474 5.474 18 C 0.055 3.945 19 C -0.042 4.042 20 C -0.113 4.113 21 C -0.091 4.091 22 C -0.157 4.157 23 C 0.098 3.902 24 F -0.140 7.140 25 C -0.146 4.146 26 C 0.012 3.988 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.076 0.924 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.335 -29.052 4.499 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.393 5.393 14 C 0.005 3.995 15 C -0.145 4.145 16 C -0.123 4.123 17 N -0.196 5.196 18 C -0.073 4.073 19 C -0.043 4.043 20 C -0.131 4.131 21 C -0.109 4.109 22 C -0.176 4.176 23 C 0.079 3.921 24 F -0.119 7.119 25 C -0.166 4.166 26 C -0.117 4.117 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.094 0.906 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.784 -29.552 4.353 32.111 hybrid contribution 1.775 1.720 0.622 2.549 sum 13.560 -27.832 4.975 31.357 Atomic orbital electron populations 1.70024 1.05953 1.27352 1.46960 1.24995 0.95031 0.99049 0.94542 0.86115 0.79596 0.81871 0.77901 1.19606 1.20561 1.20568 1.22910 0.94955 0.91632 1.58822 0.90857 1.85393 1.04987 0.96381 1.96716 1.23531 1.06555 0.95387 1.04945 1.20320 0.86512 0.86324 0.75095 1.90702 1.15405 1.85640 1.47557 1.45978 1.09975 1.05349 1.77954 1.21289 0.95129 0.80650 1.02433 1.23233 0.98495 0.94545 0.98274 1.24239 1.02039 0.89682 0.96368 1.68643 1.37937 1.04127 1.08847 1.21665 0.93631 0.98397 0.93593 1.19508 0.96748 0.94354 0.93701 1.21087 0.95456 0.96824 0.99763 1.21016 0.96855 0.99342 0.93727 1.21169 1.01339 0.95625 0.99474 1.17692 0.96756 0.92476 0.85148 1.91517 1.92372 1.77481 1.50508 1.21050 0.98024 1.01622 0.95865 1.23942 0.95044 0.94623 0.98074 0.92234 0.89222 0.89199 0.76743 0.91195 0.91658 0.87447 0.89083 0.90636 0.92328 0.89440 0.85313 0.84975 0.84855 0.85000 0.90572 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.23 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.71 7.85 -10.99 -0.09 9.62 16 12 O -0.52 -11.65 15.86 5.56 0.09 -11.56 16 13 N -0.74 -9.30 5.56 -60.29 -0.33 -9.63 16 14 C 0.13 1.36 5.51 -4.04 -0.02 1.34 16 15 C -0.13 -0.93 3.93 -89.69 -0.35 -1.29 16 16 C 0.01 0.04 7.53 -2.57 -0.02 0.02 16 17 N -0.47 -3.44 6.15 -239.43 -1.47 -4.92 16 18 C 0.06 0.36 4.93 -4.97 -0.02 0.33 16 19 C -0.04 -0.31 5.44 -104.63 -0.57 -0.88 16 20 C -0.11 -0.73 9.70 -39.58 -0.38 -1.11 16 21 C -0.09 -0.55 10.04 -39.59 -0.40 -0.95 16 22 C -0.16 -1.12 10.03 -39.51 -0.40 -1.52 16 23 C 0.10 0.87 7.30 -39.42 -0.29 0.58 16 24 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 25 C -0.15 -1.20 9.68 -39.51 -0.38 -1.59 16 26 C 0.01 0.08 7.52 -2.76 -0.02 0.06 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 30 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.57 7.26 -51.93 -0.38 0.19 16 36 H 0.06 0.37 7.33 -51.93 -0.38 -0.01 16 37 H 0.09 0.46 8.02 -51.93 -0.42 0.05 16 38 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 39 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.08 0.45 7.88 -51.92 -0.41 0.04 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 384.14 15.07 5.79 5.79 Total: -1.00 -34.93 384.14 -11.03 -45.95 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.11 Total: -0.17 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.52 Total: -11.17 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -1.07 Total: -39.97 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.93 -11.03 -45.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713887416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.396 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds