Wall clock time and date at job start Tue Mar 31 2020 20:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99825 * 2 1 4 4 H 1.48499 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47239 * 300.00444 * 3 2 1 6 6 H 1.48498 * 109.46784 * 60.00201 * 3 2 1 7 7 C 1.38797 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99769 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00257 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47135 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99946 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99687 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99892 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47130 * 180.02562 * 14 13 11 16 16 C 1.53935 * 113.73564 * 86.23324 * 15 14 13 17 17 N 1.48296 * 86.06285 * 138.12918 * 16 15 14 18 18 C 1.46902 * 111.00409 * 222.41947 * 17 16 15 19 19 C 1.50702 * 109.47215 * 269.34877 * 18 17 16 20 20 C 1.38259 * 119.99087 * 269.73250 * 19 18 17 21 21 C 1.38220 * 120.05335 * 179.72777 * 20 19 18 22 22 C 1.38225 * 120.02520 * 0.53931 * 21 20 19 23 23 C 1.38440 * 119.96968 * 359.73157 * 22 21 20 24 24 F 1.35104 * 120.02049 * 180.02562 * 23 22 21 25 25 C 1.38180 * 119.98316 * 89.99999 * 19 18 17 26 26 C 1.47961 * 90.75572 * 335.31010 * 17 16 15 27 27 H 0.97004 * 120.00791 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46889 * 59.99679 * 10 9 7 29 29 H 1.09007 * 109.46550 * 300.00163 * 10 9 7 30 30 H 0.96992 * 120.00176 * 0.02562 * 13 11 10 31 31 H 1.09002 * 109.47069 * 59.99899 * 14 13 11 32 32 H 1.09006 * 109.47047 * 300.00275 * 14 13 11 33 33 H 1.09002 * 112.93723 * 314.66502 * 15 14 13 34 34 H 1.09001 * 113.76001 * 252.50503 * 16 15 14 35 35 H 1.09000 * 113.75996 * 23.86319 * 16 15 14 36 36 H 1.09001 * 109.47358 * 29.35236 * 18 17 16 37 37 H 1.09004 * 109.47314 * 149.35402 * 18 17 16 38 38 H 1.08006 * 119.97249 * 359.97029 * 20 19 18 39 39 H 1.08008 * 119.99085 * 180.27124 * 21 20 19 40 40 H 1.07991 * 120.01337 * 179.70801 * 22 21 20 41 41 H 1.07999 * 120.01408 * 0.02562 * 25 19 18 42 42 H 1.09007 * 113.75652 * 270.36911 * 26 17 16 43 43 H 1.08993 * 113.76177 * 139.00817 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0902 -1.2019 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5022 -0.0021 13 7 2.8443 -6.3430 -0.0018 14 6 2.3306 -7.7150 -0.0019 15 6 3.5027 -8.6984 -0.0020 16 6 4.0369 -9.0259 1.4041 17 7 4.1221 -10.4295 0.9334 18 6 3.6442 -11.3606 1.9643 19 6 4.8009 -11.7872 2.8310 20 6 5.5385 -12.9078 2.4967 21 6 6.6032 -13.2970 3.2876 22 6 6.9247 -12.5725 4.4200 23 6 6.1834 -11.4535 4.7588 24 9 6.4971 -10.7443 5.8651 25 6 5.1204 -11.0613 3.9626 26 6 3.0729 -10.1746 -0.0783 27 1 -0.4851 0.8400 -0.0004 28 1 3.1245 -3.7312 0.8894 29 1 3.1245 -3.7312 -0.8906 30 1 3.8010 -6.1834 -0.0015 31 1 1.7215 -7.8749 -0.8916 32 1 1.7223 -7.8753 0.8884 33 1 4.2816 -8.4309 -0.7160 34 1 5.0048 -8.5745 1.6222 35 1 3.3062 -8.8725 2.1982 36 1 2.8920 -10.8666 2.5795 37 1 3.2052 -12.2368 1.4873 38 1 5.2850 -13.4772 1.6147 39 1 7.1814 -14.1701 3.0231 40 1 7.7537 -12.8795 5.0404 41 1 4.5412 -10.1887 4.2261 42 1 2.0607 -10.3566 0.2833 43 1 3.2710 -10.6404 -1.0435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713887416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:11 Heat of formation + Delta-G solvation = -49.698966 kcal Electronic energy + Delta-G solvation = -24867.180207 eV Core-core repulsion = 20952.833789 eV Total energy + Delta-G solvation = -3914.346418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.92071 -41.38329 -40.41609 -39.63298 -35.88373 -34.58811 -33.75176 -31.69407 -31.43436 -29.90396 -27.74947 -27.23883 -26.98856 -24.14389 -23.63253 -22.07649 -21.86096 -20.64701 -19.77091 -18.34903 -17.76917 -17.58434 -17.29523 -17.09767 -16.94621 -16.88417 -16.63309 -16.44021 -16.03609 -15.74511 -15.50430 -15.08301 -14.64452 -14.56646 -14.44407 -14.27319 -13.83258 -13.66183 -13.29948 -13.26155 -13.16138 -12.93437 -12.91424 -12.62657 -12.44326 -12.32346 -12.06428 -11.76910 -11.69154 -11.54292 -11.16172 -10.95031 -10.27402 -10.13330 -9.99536 -9.78540 -9.62384 -8.66745 -8.35125 -6.12985 0.18472 0.24363 1.27361 1.41175 1.47319 1.58465 1.61945 2.25468 2.30110 2.54363 2.99122 3.00504 3.26975 3.31056 3.44355 3.68721 3.71817 3.79269 3.98890 4.05648 4.23259 4.23703 4.25966 4.30884 4.39707 4.41351 4.46454 4.51900 4.56514 4.64848 4.72959 4.81707 4.89269 4.93818 5.07313 5.15202 5.22950 5.26414 5.40102 5.42083 5.47179 5.56910 5.93418 6.00383 6.19869 6.51342 7.06438 7.25193 8.74322 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.001739 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.900686 B =16093.418217 C =17215.525903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.711 5.711 14 C 0.130 3.870 15 C -0.115 4.115 16 C 0.004 3.996 17 N -0.479 5.479 18 C 0.056 3.944 19 C -0.050 4.050 20 C -0.114 4.114 21 C -0.089 4.089 22 C -0.162 4.162 23 C 0.071 3.929 24 F -0.155 7.155 25 C -0.158 4.158 26 C 0.017 3.983 27 H 0.271 0.729 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.416 0.584 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.147 0.853 41 H 0.128 0.872 42 H 0.082 0.918 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.767 -30.395 3.754 34.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.365 5.365 14 C 0.006 3.994 15 C -0.134 4.134 16 C -0.124 4.124 17 N -0.201 5.201 18 C -0.072 4.072 19 C -0.051 4.051 20 C -0.132 4.132 21 C -0.107 4.107 22 C -0.181 4.181 23 C 0.052 3.948 24 F -0.134 7.134 25 C -0.178 4.178 26 C -0.111 4.111 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.253 0.747 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.166 0.834 39 H 0.178 0.822 40 H 0.165 0.835 41 H 0.146 0.854 42 H 0.100 0.900 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.273 -30.937 3.608 34.261 hybrid contribution 1.071 1.964 0.850 2.393 sum 15.344 -28.974 4.459 33.087 Atomic orbital electron populations 1.70184 1.07958 1.28546 1.48077 1.26128 0.95976 1.03327 0.93768 0.84905 0.78618 0.76345 0.78074 1.18033 1.19896 1.19974 1.23241 0.95361 0.92020 1.58740 0.89909 1.85563 1.10658 0.99272 1.97046 1.23381 1.03509 0.94484 1.06789 1.20050 0.86230 0.86714 0.75125 1.90691 1.17462 1.86142 1.50312 1.45741 1.10278 1.05109 1.75366 1.21426 0.96435 0.79681 1.01813 1.23157 0.97349 0.94302 0.98570 1.24223 1.01819 0.90180 0.96205 1.68634 1.38380 1.03914 1.09189 1.21691 0.93303 0.98775 0.93388 1.19663 0.97223 0.94698 0.93492 1.21398 0.95113 0.96416 1.00273 1.21370 0.96711 0.99748 0.92835 1.21428 1.01451 0.95067 1.00109 1.18014 0.97912 0.93537 0.85342 1.91472 1.92595 1.77989 1.51326 1.21130 0.98181 1.01967 0.96503 1.23986 0.95211 0.93461 0.98480 0.91993 0.87300 0.87174 0.74676 0.91733 0.92459 0.86452 0.89279 0.91026 0.92488 0.87923 0.83374 0.82183 0.83523 0.85397 0.90028 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.04 13.22 21.65 0.29 -55.76 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.19 9.50 67.95 0.65 -30.54 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 10 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 11 C 0.53 19.19 7.85 87.66 0.69 19.88 16 12 O -0.57 -25.96 15.86 -3.04 -0.05 -26.01 16 13 N -0.71 -16.73 5.56 -463.04 -2.57 -19.30 16 14 C 0.13 2.55 5.51 86.38 0.48 3.03 16 15 C -0.11 -1.44 3.93 -10.15 -0.04 -1.48 16 16 C 0.00 0.06 7.53 86.34 0.65 0.71 16 17 N -0.48 -5.93 6.15 -911.41 -5.61 -11.53 16 18 C 0.06 0.63 4.93 85.56 0.42 1.05 16 19 C -0.05 -0.67 5.44 -19.87 -0.11 -0.77 16 20 C -0.11 -1.20 9.70 22.27 0.22 -0.98 16 21 C -0.09 -0.86 10.04 22.26 0.22 -0.64 16 22 C -0.16 -2.12 10.03 22.31 0.22 -1.90 16 23 C 0.07 1.25 7.30 22.37 0.16 1.42 16 24 F -0.15 -3.25 17.27 44.97 0.78 -2.48 16 25 C -0.16 -2.59 9.68 22.31 0.22 -2.37 16 26 C 0.02 0.18 7.52 86.41 0.65 0.83 16 27 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 29 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 30 H 0.42 7.04 8.47 -92.71 -0.79 6.25 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.26 7.88 -2.38 -0.02 1.24 16 33 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.02 7.26 -2.39 -0.02 1.00 16 36 H 0.06 0.65 7.33 -2.39 -0.02 0.63 16 37 H 0.10 0.82 8.02 -2.39 -0.02 0.80 16 38 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 40 H 0.15 1.41 8.06 -2.92 -0.02 1.39 16 41 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 42 H 0.08 0.78 7.88 -2.38 -0.02 0.76 16 43 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -78.09 384.14 -0.73 -78.82 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.24 Total: 15.45 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 5.33 Total: -15.25 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -7.89 Total: -86.59 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.05 Total: -26.01 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -78.09 -0.73 -78.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713887416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.120 kcal (2) G-P(sol) polarization free energy of solvation -78.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds