Wall clock time and date at job start Tue Mar 31 2020 20:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 120.00644 * 2 1 4 4 H 1.48496 * 109.47017 * 270.00418 * 3 2 1 5 5 H 1.48506 * 109.46559 * 30.00148 * 3 2 1 6 6 H 1.48495 * 109.47054 * 150.00037 * 3 2 1 7 7 C 1.38804 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00098 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47242 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99600 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00162 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00138 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47050 * 180.02562 * 14 13 11 16 16 C 1.31002 * 120.00010 * 125.00077 * 15 14 13 17 17 C 1.50702 * 119.99691 * 179.97438 * 16 15 14 18 18 N 1.46899 * 109.46600 * 125.00178 * 17 16 15 19 19 C 1.46905 * 110.99942 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.47137 * 179.97438 * 19 18 17 21 21 C 1.38227 * 120.01020 * 105.00458 * 20 19 18 22 22 C 1.38219 * 120.02402 * 180.27931 * 21 20 19 23 23 C 1.38271 * 120.05279 * 359.48356 * 22 21 20 24 24 C 1.38179 * 120.02498 * 0.51287 * 23 22 21 25 25 C 1.38435 * 120.01563 * 285.02139 * 20 19 18 26 26 F 1.35097 * 120.02437 * 359.95787 * 25 20 19 27 27 H 0.97008 * 119.99515 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47164 * 60.00111 * 10 9 7 29 29 H 1.09001 * 109.46997 * 300.00578 * 10 9 7 30 30 H 0.97006 * 120.00106 * 359.97438 * 13 11 10 31 31 H 1.08999 * 109.47045 * 59.99840 * 14 13 11 32 32 H 1.08999 * 109.47050 * 299.99871 * 14 13 11 33 33 H 1.08005 * 119.99922 * 304.99861 * 15 14 13 34 34 H 1.07992 * 119.99993 * 0.02562 * 16 15 14 35 35 H 1.08998 * 109.47656 * 5.00540 * 17 16 15 36 36 H 1.08995 * 109.47536 * 244.99963 * 17 16 15 37 37 H 1.00899 * 111.00444 * 303.95311 * 18 17 16 38 38 H 1.09004 * 109.47045 * 59.99785 * 19 18 17 39 39 H 1.09000 * 109.47403 * 300.00082 * 19 18 17 40 40 H 1.08002 * 119.98464 * 359.97438 * 21 20 19 41 41 H 1.08000 * 119.97200 * 179.72235 * 22 21 20 42 42 H 1.07997 * 119.98711 * 180.25982 * 23 22 21 43 43 H 1.07994 * 120.01414 * 179.76315 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4399 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5155 -3.8916 -0.0005 11 6 1.9870 -5.3028 -0.0012 12 8 0.7907 -5.5023 -0.0011 13 7 2.8437 -6.3433 -0.0008 14 6 2.3298 -7.7152 -0.0008 15 6 3.4842 -8.6839 0.0003 16 6 3.5669 -9.6032 0.9300 17 6 4.7211 -10.5723 0.9307 18 7 5.4000 -10.5240 2.2325 19 6 6.5329 -11.4585 2.2704 20 6 7.2034 -11.3806 3.6177 21 6 7.0167 -12.3911 4.5423 22 6 7.6270 -12.3171 5.7803 23 6 8.4333 -11.2379 6.0915 24 6 8.6215 -10.2266 5.1688 25 6 8.0063 -10.2970 3.9301 26 9 8.1899 -9.3091 3.0270 27 1 -0.4850 0.8402 0.0004 28 1 3.1242 -3.7316 0.8894 29 1 3.1242 -3.7315 -0.8905 30 1 3.8005 -6.1837 -0.0004 31 1 1.7215 -7.8753 -0.8910 32 1 1.7209 -7.8752 0.8890 33 1 4.2433 -8.6203 -0.7653 34 1 2.8076 -9.6671 1.6952 35 1 5.4245 -10.3003 0.1438 36 1 4.3487 -11.5810 0.7524 37 1 5.6980 -9.5850 2.4504 38 1 7.2490 -11.1930 1.4926 39 1 6.1727 -12.4733 2.1015 40 1 6.3899 -13.2362 4.2990 41 1 7.4769 -13.1049 6.5037 42 1 8.9130 -11.1833 7.0575 43 1 9.2482 -9.3819 5.4135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715786690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:28 Heat of formation + Delta-G solvation = -44.989210 kcal Electronic energy + Delta-G solvation = -24216.941924 eV Core-core repulsion = 20302.799737 eV Total energy + Delta-G solvation = -3914.142187 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.34490 -39.61293 -39.15135 -37.31807 -35.45726 -33.40307 -32.41070 -31.66119 -30.93226 -29.55114 -27.45950 -25.54803 -25.17339 -23.34306 -23.04531 -21.88668 -20.54639 -19.75249 -18.04901 -17.84183 -17.13218 -16.67568 -16.29618 -16.16945 -16.00662 -15.56991 -15.36225 -15.06910 -14.78821 -14.72675 -14.45471 -13.92035 -13.85471 -13.67123 -13.49377 -13.02472 -12.95815 -12.79620 -12.58861 -12.54721 -12.23216 -12.08205 -11.72061 -11.48404 -11.27249 -11.04907 -11.00710 -10.74833 -9.82424 -9.76494 -9.53102 -9.27821 -9.19608 -9.05248 -8.88862 -8.81917 -8.21510 -6.47973 -6.19966 -3.90335 0.63522 0.72081 1.73372 3.06223 3.11881 3.12916 3.23657 3.29874 3.36455 3.77231 3.82469 3.87518 4.15406 4.22125 4.24520 4.43599 4.50067 4.68211 4.74248 4.80709 4.99146 5.01775 5.04913 5.15124 5.15874 5.20666 5.36639 5.37807 5.53470 5.54724 5.61642 5.64204 5.83765 5.83946 5.91639 5.91793 6.16497 6.26255 6.33970 6.38745 6.49695 6.65904 6.87526 7.61325 7.74238 8.37006 8.63841 9.25304 10.87465 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.001646 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.414934 B =17006.953616 C =18486.508476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.736 5.736 14 C 0.150 3.850 15 C -0.163 4.163 16 C -0.137 4.137 17 C 0.087 3.913 18 N -0.682 5.682 19 C 0.099 3.901 20 C -0.115 4.115 21 C -0.075 4.075 22 C -0.130 4.130 23 C -0.091 4.091 24 C -0.153 4.153 25 C 0.102 3.898 26 F -0.139 7.139 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.399 0.601 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.347 0.653 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.208 -28.808 8.078 35.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.391 5.391 14 C 0.027 3.973 15 C -0.183 4.183 16 C -0.157 4.157 17 C -0.041 4.041 18 N -0.313 5.313 19 C -0.030 4.030 20 C -0.117 4.117 21 C -0.094 4.094 22 C -0.148 4.148 23 C -0.110 4.110 24 C -0.172 4.172 25 C 0.083 3.917 26 F -0.117 7.117 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.165 0.835 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 16.587 -29.443 8.321 34.804 hybrid contribution 3.158 2.000 -0.697 3.803 sum 19.745 -27.443 7.624 34.657 Atomic orbital electron populations 1.70024 1.05944 1.27424 1.46887 1.24996 0.95033 0.99021 0.94558 0.86165 0.79414 0.81572 0.78332 1.20283 1.20748 1.19703 1.22876 0.94920 0.91670 1.58908 0.90925 1.85395 1.04966 0.96305 1.96715 1.23530 1.06553 0.95347 1.04941 1.20325 0.86521 0.86284 0.75146 1.90702 1.15370 1.85595 1.47585 1.45990 1.10003 1.05161 1.77905 1.20258 0.94216 0.80158 1.02694 1.22993 0.99326 0.96636 0.99330 1.22833 0.98445 0.96051 0.98347 1.21026 0.93873 0.99590 0.89600 1.60510 1.27845 1.12138 1.30799 1.20807 0.91411 0.98516 0.92258 1.19829 0.99064 0.94831 0.97940 1.20961 0.98002 0.97852 0.92546 1.21247 0.97810 0.98811 0.96976 1.21063 0.97650 0.93140 0.99121 1.21186 1.02138 1.01158 0.92727 1.17630 0.99394 0.86720 0.87982 1.91503 1.93910 1.59931 1.66363 0.92197 0.89198 0.89225 0.76780 0.90776 0.91141 0.86843 0.86175 0.94505 0.89853 0.83478 0.93831 0.89410 0.84880 0.85195 0.84975 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.44 9.50 30.94 0.29 -15.14 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 11 C 0.53 10.18 7.85 -10.99 -0.09 10.10 16 12 O -0.52 -12.06 15.86 5.56 0.09 -11.98 16 13 N -0.74 -10.17 5.55 -61.48 -0.34 -10.51 16 14 C 0.15 1.80 6.11 -5.19 -0.03 1.77 16 15 C -0.16 -1.44 9.24 -36.03 -0.33 -1.77 16 16 C -0.14 -1.13 9.38 -36.03 -0.34 -1.47 16 17 C 0.09 0.61 6.13 -4.98 -0.03 0.58 16 18 N -0.68 -5.30 6.48 -116.34 -0.75 -6.06 16 19 C 0.10 0.66 5.50 -4.97 -0.03 0.63 16 20 C -0.12 -0.83 5.43 -104.55 -0.57 -1.40 16 21 C -0.08 -0.44 9.67 -39.59 -0.38 -0.82 16 22 C -0.13 -0.67 10.04 -39.58 -0.40 -1.07 16 23 C -0.09 -0.49 10.04 -39.59 -0.40 -0.89 16 24 C -0.15 -1.04 10.03 -39.51 -0.40 -1.44 16 25 C 0.10 0.84 7.10 -39.42 -0.28 0.56 16 26 F -0.14 -1.30 16.36 2.25 0.04 -1.27 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 30 H 0.40 4.37 8.46 -40.82 -0.35 4.03 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 33 H 0.11 0.87 7.84 -52.48 -0.41 0.46 16 34 H 0.12 1.06 7.84 -52.49 -0.41 0.65 16 35 H 0.04 0.25 7.79 -51.93 -0.40 -0.16 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.35 2.99 8.19 -39.29 -0.32 2.67 16 38 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 39 H 0.09 0.47 7.95 -51.93 -0.41 0.05 16 40 H 0.13 0.54 8.00 -52.49 -0.42 0.12 16 41 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -35.13 391.39 -10.48 -45.60 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.06 Total: 2.54 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.85 Total: -11.27 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -0.36 Total: -42.23 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.13 -10.48 -45.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715786690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.615 kcal (2) G-P(sol) polarization free energy of solvation -35.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds