Wall clock time and date at job start Tue Mar 31 2020 20:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 120.00644 * 2 1 4 4 H 1.48496 * 109.47017 * 270.00418 * 3 2 1 5 5 H 1.48506 * 109.46559 * 30.00148 * 3 2 1 6 6 H 1.48495 * 109.47054 * 150.00037 * 3 2 1 7 7 C 1.38804 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00098 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47242 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99600 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00162 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00138 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47050 * 180.02562 * 14 13 11 16 16 C 1.31002 * 120.00010 * 125.00077 * 15 14 13 17 17 C 1.50702 * 119.99691 * 179.97438 * 16 15 14 18 18 N 1.46899 * 109.46600 * 125.00178 * 17 16 15 19 19 C 1.46905 * 110.99942 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.47137 * 179.97438 * 19 18 17 21 21 C 1.38227 * 120.01020 * 105.00458 * 20 19 18 22 22 C 1.38219 * 120.02402 * 180.27931 * 21 20 19 23 23 C 1.38271 * 120.05279 * 359.48356 * 22 21 20 24 24 C 1.38179 * 120.02498 * 0.51287 * 23 22 21 25 25 C 1.38435 * 120.01563 * 285.02139 * 20 19 18 26 26 F 1.35097 * 120.02437 * 359.95787 * 25 20 19 27 27 H 0.97008 * 119.99515 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47164 * 60.00111 * 10 9 7 29 29 H 1.09001 * 109.46997 * 300.00578 * 10 9 7 30 30 H 0.97006 * 120.00106 * 359.97438 * 13 11 10 31 31 H 1.08999 * 109.47045 * 59.99840 * 14 13 11 32 32 H 1.08999 * 109.47050 * 299.99871 * 14 13 11 33 33 H 1.08005 * 119.99922 * 304.99861 * 15 14 13 34 34 H 1.07992 * 119.99993 * 0.02562 * 16 15 14 35 35 H 1.08998 * 109.47656 * 5.00540 * 17 16 15 36 36 H 1.08995 * 109.47536 * 244.99963 * 17 16 15 37 37 H 1.00899 * 111.00444 * 303.95311 * 18 17 16 38 38 H 1.09004 * 109.47045 * 59.99785 * 19 18 17 39 39 H 1.09000 * 109.47403 * 300.00082 * 19 18 17 40 40 H 1.08002 * 119.98464 * 359.97438 * 21 20 19 41 41 H 1.08000 * 119.97200 * 179.72235 * 22 21 20 42 42 H 1.07997 * 119.98711 * 180.25982 * 23 22 21 43 43 H 1.07994 * 120.01414 * 179.76315 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4399 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5155 -3.8916 -0.0005 11 6 1.9870 -5.3028 -0.0012 12 8 0.7907 -5.5023 -0.0011 13 7 2.8437 -6.3433 -0.0008 14 6 2.3298 -7.7152 -0.0008 15 6 3.4842 -8.6839 0.0003 16 6 3.5669 -9.6032 0.9300 17 6 4.7211 -10.5723 0.9307 18 7 5.4000 -10.5240 2.2325 19 6 6.5329 -11.4585 2.2704 20 6 7.2034 -11.3806 3.6177 21 6 7.0167 -12.3911 4.5423 22 6 7.6270 -12.3171 5.7803 23 6 8.4333 -11.2379 6.0915 24 6 8.6215 -10.2266 5.1688 25 6 8.0063 -10.2970 3.9301 26 9 8.1899 -9.3091 3.0270 27 1 -0.4850 0.8402 0.0004 28 1 3.1242 -3.7316 0.8894 29 1 3.1242 -3.7315 -0.8905 30 1 3.8005 -6.1837 -0.0004 31 1 1.7215 -7.8753 -0.8910 32 1 1.7209 -7.8752 0.8890 33 1 4.2433 -8.6203 -0.7653 34 1 2.8076 -9.6671 1.6952 35 1 5.4245 -10.3003 0.1438 36 1 4.3487 -11.5810 0.7524 37 1 5.6980 -9.5850 2.4504 38 1 7.2490 -11.1930 1.4926 39 1 6.1727 -12.4733 2.1015 40 1 6.3899 -13.2362 4.2990 41 1 7.4769 -13.1049 6.5037 42 1 8.9130 -11.1833 7.0575 43 1 9.2482 -9.3819 5.4135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715786690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:27 Heat of formation + Delta-G solvation = -68.603129 kcal Electronic energy + Delta-G solvation = -24217.965900 eV Core-core repulsion = 20302.799737 eV Total energy + Delta-G solvation = -3915.166164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.94905 -40.62760 -40.04912 -37.98459 -36.43684 -34.59234 -34.33919 -32.35154 -31.43028 -30.89942 -28.34678 -27.63358 -25.95810 -23.90734 -23.66186 -22.35420 -21.88095 -20.66266 -19.78045 -18.54998 -17.90243 -17.67428 -17.36744 -16.98168 -16.88147 -16.74831 -16.65019 -16.23665 -15.80735 -15.66430 -15.45546 -15.04392 -14.82225 -14.52589 -14.43835 -14.28073 -14.05183 -13.76850 -13.39315 -13.24248 -13.17167 -13.06199 -12.89174 -12.82079 -12.61888 -12.51377 -12.08183 -11.83966 -11.72727 -11.14713 -11.09286 -10.41539 -10.28544 -10.03183 -9.94923 -9.69110 -9.42833 -8.67551 -8.35075 -6.13428 0.17232 0.27326 0.96564 1.29796 1.42282 1.48425 1.58838 1.59394 2.26695 2.42650 2.61835 2.98967 3.28460 3.31750 3.32345 3.67980 3.73998 3.80980 3.98183 4.05954 4.07802 4.27753 4.29931 4.35827 4.40578 4.49732 4.52377 4.54530 4.59267 4.65143 4.76250 4.83560 4.95672 5.11712 5.21466 5.35011 5.41449 5.42044 5.49667 5.58429 5.69549 5.90921 5.99005 6.19457 6.24839 6.48952 7.06057 7.21815 8.74206 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.001646 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.414934 B =17006.953616 C =18486.508476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.710 5.710 14 C 0.150 3.850 15 C -0.163 4.163 16 C -0.125 4.125 17 C 0.090 3.910 18 N -0.689 5.689 19 C 0.101 3.899 20 C -0.127 4.127 21 C -0.081 4.081 22 C -0.130 4.130 23 C -0.094 4.094 24 C -0.166 4.166 25 C 0.075 3.925 26 F -0.153 7.153 27 H 0.271 0.729 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.416 0.584 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.045 0.955 36 H 0.095 0.905 37 H 0.340 0.660 38 H 0.039 0.961 39 H 0.103 0.897 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.702 -30.029 8.665 38.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.364 5.364 14 C 0.027 3.973 15 C -0.182 4.182 16 C -0.145 4.145 17 C -0.038 4.038 18 N -0.320 5.320 19 C -0.027 4.027 20 C -0.128 4.128 21 C -0.100 4.100 22 C -0.148 4.148 23 C -0.112 4.112 24 C -0.185 4.185 25 C 0.055 3.945 26 F -0.132 7.132 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.253 0.747 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.131 0.869 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.157 0.843 38 H 0.057 0.943 39 H 0.121 0.879 40 H 0.169 0.831 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 19.139 -30.710 8.906 37.266 hybrid contribution 2.432 2.189 -0.812 3.371 sum 21.570 -28.521 8.094 36.664 Atomic orbital electron populations 1.70189 1.07971 1.28620 1.47947 1.26144 0.95990 1.03341 0.93713 0.84940 0.78174 0.75960 0.78815 1.19257 1.20243 1.18234 1.23212 0.95363 0.91990 1.58951 0.89904 1.85574 1.10564 0.99247 1.97057 1.23373 1.03577 0.94286 1.06830 1.20100 0.86230 0.86730 0.75127 1.90690 1.17424 1.86122 1.50293 1.45758 1.10343 1.04883 1.75402 1.20340 0.95532 0.79494 1.01957 1.22791 0.98744 0.96218 1.00490 1.22898 0.98402 0.95749 0.97433 1.21030 0.93388 0.99773 0.89594 1.60538 1.28396 1.11903 1.31155 1.20836 0.90976 0.98906 0.92028 1.19990 0.99214 0.95046 0.98562 1.21263 0.98146 0.97972 0.92598 1.21616 0.96830 0.99168 0.97147 1.21401 0.97447 0.92635 0.99721 1.21415 1.02357 1.02028 0.92688 1.17955 1.00867 0.87157 0.88520 1.91455 1.94177 1.60598 1.66929 0.91971 0.87274 0.87095 0.74698 0.91426 0.92192 0.84996 0.86931 0.93730 0.88655 0.84293 0.94259 0.87910 0.83090 0.82699 0.82675 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 44.01 29.55 68.60 2.03 46.04 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.55 -31.67 9.50 67.96 0.65 -31.02 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.13 -5.24 6.16 71.23 0.44 -4.81 16 11 C 0.53 20.24 7.85 87.66 0.69 20.93 16 12 O -0.57 -27.02 15.86 -3.03 -0.05 -27.07 16 13 N -0.71 -18.62 5.55 -466.80 -2.59 -21.21 16 14 C 0.15 3.46 6.11 85.63 0.52 3.98 16 15 C -0.16 -2.55 9.24 25.64 0.24 -2.31 16 16 C -0.13 -1.84 9.38 25.64 0.24 -1.60 16 17 C 0.09 1.08 6.13 85.56 0.52 1.60 16 18 N -0.69 -9.81 6.48 -521.97 -3.38 -13.19 16 19 C 0.10 1.21 5.50 85.56 0.47 1.69 16 20 C -0.13 -1.72 5.43 -19.82 -0.11 -1.83 16 21 C -0.08 -0.80 9.67 22.26 0.22 -0.59 16 22 C -0.13 -1.04 10.04 22.27 0.22 -0.81 16 23 C -0.09 -0.85 10.04 22.26 0.22 -0.62 16 24 C -0.17 -2.16 10.03 22.31 0.22 -1.94 16 25 C 0.07 1.21 7.10 22.38 0.16 1.36 16 26 F -0.15 -2.93 16.36 44.97 0.74 -2.20 16 27 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 28 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 29 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 30 H 0.42 8.10 8.46 -92.70 -0.78 7.31 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.54 7.79 -2.39 -0.02 1.52 16 33 H 0.13 1.64 7.84 -2.91 -0.02 1.62 16 34 H 0.11 1.86 7.84 -2.91 -0.02 1.83 16 35 H 0.04 0.49 7.79 -2.39 -0.02 0.47 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.34 5.61 8.19 -89.69 -0.73 4.87 16 38 H 0.04 0.50 8.08 -2.39 -0.02 0.48 16 39 H 0.10 0.88 7.95 -2.39 -0.02 0.87 16 40 H 0.15 0.85 8.00 -2.91 -0.02 0.83 16 41 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 42 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 43 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -78.56 391.39 0.56 -78.01 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.48 Total: 20.32 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 5.17 Total: -14.76 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -5.68 Total: -90.62 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.74 Total: -2.20 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -78.56 0.56 -78.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715786690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.405 kcal (2) G-P(sol) polarization free energy of solvation -78.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds