Wall clock time and date at job start Tue Mar 31 2020 20:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86802 * 119.99499 * 2 1 4 4 H 1.48507 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47221 * 299.99680 * 3 2 1 6 6 H 1.48498 * 109.47562 * 59.99970 * 3 2 1 7 7 C 1.38793 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00186 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00111 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47176 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00402 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00240 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00403 * 180.27604 * 13 11 10 15 15 C 1.52998 * 109.47276 * 174.31877 * 14 13 11 16 16 N 1.46904 * 115.55023 * 269.84628 * 15 14 13 17 17 C 1.46900 * 110.99801 * 294.96186 * 16 15 14 18 18 C 1.50697 * 109.46860 * 190.17437 * 17 16 15 19 19 C 1.38262 * 119.98883 * 89.99900 * 18 17 16 20 20 C 1.38233 * 120.05243 * 179.97438 * 19 18 17 21 21 C 1.38213 * 120.02404 * 0.02562 * 20 19 18 22 22 C 1.38436 * 119.97429 * 0.02562 * 21 20 19 23 23 F 1.35099 * 120.02922 * 179.97438 * 22 21 20 24 24 C 1.38180 * 119.98428 * 269.72312 * 18 17 16 25 25 C 1.52998 * 117.49968 * 124.17317 * 15 14 13 26 26 C 1.53000 * 117.49939 * 55.51324 * 15 14 13 27 27 H 0.96998 * 120.00503 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47107 * 59.99504 * 10 9 7 29 29 H 1.09001 * 109.47096 * 299.99711 * 10 9 7 30 30 H 0.97006 * 119.99864 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.46785 * 294.32089 * 14 13 11 32 32 H 1.08995 * 109.46569 * 54.31732 * 14 13 11 33 33 H 1.00892 * 111.00006 * 58.91680 * 16 15 14 34 34 H 1.09003 * 109.46890 * 310.17180 * 17 16 15 35 35 H 1.09002 * 109.47214 * 70.16887 * 17 16 15 36 36 H 1.08002 * 119.97557 * 0.02562 * 19 18 17 37 37 H 1.07998 * 119.98376 * 180.02562 * 20 19 18 38 38 H 1.07995 * 120.01613 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.01138 * 359.97438 * 24 18 17 40 40 H 1.09002 * 117.49782 * 0.02562 * 25 15 14 41 41 H 1.09001 * 117.50191 * 145.01747 * 25 15 14 42 42 H 1.09000 * 117.50216 * 214.98219 * 26 15 14 43 43 H 1.09002 * 117.49562 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3466 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3966 1.2124 7 6 2.0104 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9877 -5.3026 0.0012 12 8 0.7914 -5.5023 0.0011 13 7 2.8444 -6.3430 0.0008 14 6 2.3308 -7.7150 -0.0047 15 6 3.4967 -8.6955 -0.1468 16 7 3.8583 -9.0545 -1.5247 17 6 2.7701 -9.7931 -2.1791 18 6 3.2619 -10.3580 -3.4867 19 6 3.8295 -11.6182 -3.5253 20 6 4.2806 -12.1379 -4.7241 21 6 4.1651 -11.3979 -5.8857 22 6 3.5980 -10.1356 -5.8482 23 9 3.4851 -9.4111 -6.9829 24 6 3.1403 -9.6187 -4.6478 25 6 3.6469 -9.7749 0.9270 26 6 4.6282 -8.6011 0.8787 27 1 -0.4851 0.8400 -0.0004 28 1 3.1247 -3.7311 0.8905 29 1 3.1246 -3.7312 -0.8895 30 1 3.8013 -6.1833 0.0004 31 1 1.8042 -7.9095 0.9296 32 1 1.6446 -7.8426 -0.8419 33 1 4.1109 -8.2356 -2.0572 34 1 2.4428 -10.6068 -1.5319 35 1 1.9343 -9.1188 -2.3659 36 1 3.9197 -12.1973 -2.6181 37 1 4.7233 -13.1225 -4.7530 38 1 4.5180 -11.8039 -6.8222 39 1 2.6925 -8.6364 -4.6182 40 1 2.9148 -9.7868 1.7345 41 1 4.0143 -10.7514 0.6113 42 1 5.6408 -8.8057 0.5312 43 1 4.5421 -7.8401 1.6544 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716676321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:32 Heat of formation + Delta-G solvation = -33.579824 kcal Electronic energy + Delta-G solvation = -25259.731103 eV Core-core repulsion = 21346.083664 eV Total energy + Delta-G solvation = -3913.647439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.16545 -39.95986 -39.33010 -38.21755 -34.51610 -33.79159 -32.44378 -31.13819 -30.69932 -29.73932 -26.45995 -25.74677 -25.40662 -23.07829 -22.88217 -21.68691 -20.32674 -19.97338 -17.96117 -17.70177 -16.85712 -16.64836 -16.49952 -16.18683 -15.90957 -15.81841 -15.46276 -14.97587 -14.81938 -14.64320 -14.35828 -13.94572 -13.84235 -13.47517 -13.31337 -13.12980 -12.80285 -12.61715 -12.48780 -12.37709 -11.94176 -11.83058 -11.70264 -11.42524 -11.08231 -11.03739 -10.85237 -10.76802 -10.44548 -9.82591 -9.47854 -9.37594 -9.09756 -9.05386 -8.96680 -8.87024 -8.25488 -6.52122 -6.23377 -3.94128 0.77055 0.83678 2.91167 3.04542 3.11790 3.20593 3.24271 3.29700 3.43661 3.68498 3.81048 3.92879 4.18740 4.29414 4.31625 4.36965 4.63253 4.67696 4.71728 4.80541 4.93682 5.05970 5.11278 5.11933 5.12788 5.33396 5.36325 5.47554 5.49465 5.56333 5.63579 5.68971 5.74279 5.75800 5.86036 5.87768 5.91454 6.11029 6.12129 6.49981 6.53058 6.58864 6.91362 7.58364 7.65170 8.33900 8.55950 9.22151 10.84098 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.002161 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.523875 B =12955.469620 C =14442.902716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.736 5.736 14 C 0.131 3.869 15 C 0.014 3.986 16 N -0.644 5.644 17 C 0.094 3.906 18 C -0.049 4.049 19 C -0.109 4.109 20 C -0.093 4.093 21 C -0.156 4.156 22 C 0.098 3.902 23 F -0.140 7.140 24 C -0.147 4.147 25 C -0.149 4.149 26 C -0.153 4.153 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.399 0.601 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.349 0.651 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.715 -26.636 -5.011 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.391 5.391 14 C 0.005 3.995 15 C -0.078 4.078 16 N -0.274 5.274 17 C -0.034 4.034 18 C -0.049 4.049 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.175 4.175 22 C 0.079 3.921 23 F -0.118 7.118 24 C -0.166 4.166 25 C -0.187 4.187 26 C -0.191 4.191 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.233 0.767 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.168 0.832 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.868 -27.402 -4.876 29.530 hybrid contribution 1.766 2.232 -0.527 2.894 sum 11.634 -25.170 -5.403 28.250 Atomic orbital electron populations 1.70026 1.05953 1.27371 1.46935 1.25001 0.95040 0.99070 0.94534 0.86110 0.79582 0.81849 0.77915 1.19607 1.20549 1.20555 1.22900 0.94933 0.91597 1.58851 0.90865 1.85405 1.04924 0.96394 1.96716 1.23524 1.06580 0.95321 1.04923 1.20350 0.86516 0.86321 0.75110 1.90707 1.15399 1.85625 1.47480 1.46038 1.10022 1.05108 1.77981 1.21269 0.94725 0.80791 1.02725 1.21684 0.98132 1.00758 0.87212 1.60348 1.38048 1.28085 1.00895 1.20889 0.92392 0.98298 0.91818 1.19591 0.97387 0.94104 0.93855 1.21088 0.98173 0.95339 0.98150 1.21016 0.98616 0.99766 0.91712 1.21167 1.02381 0.93676 1.00268 1.17694 1.01148 0.90904 0.82325 1.91518 1.94078 1.77250 1.48998 1.21129 1.02706 1.01475 0.91312 1.23098 1.02335 0.94441 0.98798 1.23097 0.95410 1.00889 0.99667 0.92222 0.89212 0.89254 0.76697 0.91155 0.91125 0.83181 0.89360 0.93261 0.85270 0.85013 0.84882 0.84773 0.88325 0.87967 0.87803 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 11 C 0.53 9.67 7.85 -10.99 -0.09 9.59 16 12 O -0.52 -11.62 15.85 5.56 0.09 -11.53 16 13 N -0.74 -9.32 5.46 -60.30 -0.33 -9.65 16 14 C 0.13 1.44 5.76 -4.04 -0.02 1.42 16 15 C 0.01 0.12 1.83 -131.60 -0.24 -0.13 16 16 N -0.64 -5.03 6.55 -101.22 -0.66 -5.69 16 17 C 0.09 0.72 5.49 -4.98 -0.03 0.69 16 18 C -0.05 -0.39 5.46 -104.64 -0.57 -0.96 16 19 C -0.11 -0.75 9.70 -39.57 -0.38 -1.13 16 20 C -0.09 -0.60 10.04 -39.59 -0.40 -1.00 16 21 C -0.16 -1.19 10.03 -39.52 -0.40 -1.59 16 22 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 23 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 24 C -0.15 -1.34 9.68 -39.51 -0.38 -1.72 16 25 C -0.15 -1.01 10.01 -26.69 -0.27 -1.28 16 26 C -0.15 -1.08 9.59 -26.69 -0.26 -1.34 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 30 H 0.40 4.04 8.06 -40.82 -0.33 3.71 16 31 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 32 H 0.07 0.87 6.64 -51.93 -0.34 0.53 16 33 H 0.35 2.90 8.90 -39.30 -0.35 2.55 16 34 H 0.09 0.61 7.93 -51.93 -0.41 0.20 16 35 H 0.05 0.42 6.92 -51.93 -0.36 0.07 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.10 0.64 8.03 -51.93 -0.42 0.22 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -34.15 387.10 -10.40 -44.55 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.97 Total: 3.42 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -2.90 Total: -12.53 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.26 Total: -40.77 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.15 -10.40 -44.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716676321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.970 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds