Wall clock time and date at job start Tue Mar 31 2020 20:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47056 * 270.00383 * 3 2 1 5 5 H 1.48506 * 109.46718 * 30.00386 * 3 2 1 6 6 H 1.48495 * 109.47034 * 150.00083 * 3 2 1 7 7 C 1.38801 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99699 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99803 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46930 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99617 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99664 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99783 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47298 * 179.97438 * 14 13 11 16 16 H 1.09002 * 112.95602 * 74.66817 * 15 14 13 17 17 C 1.53930 * 113.75961 * 206.31406 * 15 14 13 18 18 C 1.53938 * 86.33835 * 138.14959 * 17 15 14 19 19 N 1.47959 * 113.75963 * 303.02641 * 15 14 13 20 20 C 1.46895 * 111.00486 * 107.98781 * 19 15 14 21 21 C 1.50702 * 109.47434 * 176.17274 * 20 19 15 22 22 C 1.38222 * 120.01274 * 98.07211 * 21 20 19 23 23 C 1.38219 * 120.02290 * 179.97438 * 22 21 20 24 24 C 1.38265 * 120.05156 * 359.97438 * 23 22 21 25 25 C 1.38177 * 120.02694 * 0.04790 * 24 23 22 26 26 C 1.38438 * 120.00764 * 277.79989 * 21 20 19 27 27 F 1.35101 * 120.03013 * 359.97438 * 26 21 20 28 28 H 0.97006 * 120.00095 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.46959 * 59.99954 * 10 9 7 30 30 H 1.09001 * 109.47009 * 299.99743 * 10 9 7 31 31 H 0.97000 * 120.00303 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.47115 * 60.00180 * 14 13 11 33 33 H 1.09005 * 109.47019 * 300.00548 * 14 13 11 34 34 H 1.09001 * 113.73680 * 252.50867 * 17 15 14 35 35 H 1.08999 * 113.73719 * 23.68967 * 17 15 14 36 36 H 1.09000 * 113.75709 * 90.60004 * 18 17 15 37 37 H 1.09000 * 113.75827 * 221.85044 * 18 17 15 38 38 H 1.09003 * 109.46899 * 296.16871 * 20 19 15 39 39 H 1.08995 * 109.47170 * 56.16916 * 20 19 15 40 40 H 1.07995 * 119.98747 * 359.96090 * 22 21 20 41 41 H 1.08003 * 119.97431 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.98757 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.01135 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3028 -0.0030 12 8 0.7910 -5.5023 -0.0030 13 7 2.8441 -6.3431 -0.0037 14 6 2.3303 -7.7151 -0.0040 15 6 3.5023 -8.6986 -0.0054 16 1 3.9994 -8.7691 0.9621 17 6 3.1651 -10.0643 -0.6304 18 6 4.5460 -9.9854 -1.3060 19 7 4.4324 -8.5159 -1.1415 20 6 5.7042 -7.9339 -0.6924 21 6 6.6573 -7.8500 -1.8567 22 6 6.8052 -6.6604 -2.5448 23 6 7.6797 -6.5831 -3.6124 24 6 8.4078 -7.6951 -3.9930 25 6 8.2613 -8.8856 -3.3069 26 6 7.3892 -8.9629 -2.2340 27 9 7.2499 -10.1246 -1.5584 28 1 -0.4850 0.8401 0.0004 29 1 3.1251 -3.7318 0.8874 30 1 3.1237 -3.7310 -0.8926 31 1 3.8008 -6.1835 -0.0033 32 1 1.7213 -7.8749 -0.8938 33 1 1.7220 -7.8755 0.8862 34 1 3.0784 -10.8707 0.0979 35 1 2.3301 -10.0324 -1.3302 36 1 5.3483 -10.4323 -0.7188 37 1 4.5459 -10.3140 -2.3452 38 1 5.5264 -6.9343 -0.2957 39 1 6.1364 -8.5623 0.0864 40 1 6.2372 -5.7911 -2.2482 41 1 7.7950 -5.6530 -4.1492 42 1 9.0911 -7.6334 -4.8271 43 1 8.8298 -9.7542 -3.6047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723402257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:48 Heat of formation + Delta-G solvation = -21.162115 kcal Electronic energy + Delta-G solvation = -26125.002196 eV Core-core repulsion = 22211.893229 eV Total energy + Delta-G solvation = -3913.108967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.29980 -40.63638 -39.19087 -38.71883 -34.31173 -33.30190 -32.41311 -30.89023 -30.10197 -29.21224 -27.56750 -25.46199 -24.94999 -23.50608 -22.99056 -21.62234 -20.40498 -19.87450 -18.01616 -17.84596 -16.90249 -16.66276 -16.43018 -16.28852 -15.92168 -15.72304 -15.11496 -14.89327 -14.79266 -14.66099 -14.30321 -13.90815 -13.78480 -13.41761 -13.36224 -13.08289 -12.75472 -12.61159 -12.42018 -12.21418 -11.98432 -11.80361 -11.67189 -11.29040 -11.08190 -11.05277 -11.00940 -10.99018 -10.73873 -9.79948 -9.43740 -9.31110 -9.16681 -9.05481 -8.93193 -8.78655 -8.20891 -6.47640 -6.20096 -3.90262 0.78707 0.87171 3.02316 3.16429 3.18062 3.23136 3.28815 3.32683 3.56680 3.81308 3.90849 4.09128 4.21913 4.30561 4.32857 4.49239 4.58959 4.80532 4.83433 4.92186 4.96822 4.98670 5.09862 5.14949 5.15662 5.25091 5.39887 5.45354 5.50690 5.59891 5.65627 5.71377 5.75345 5.81553 5.90843 5.94217 5.97442 6.03140 6.09450 6.16014 6.53284 6.66298 6.70253 7.60809 7.77230 8.36591 8.68063 9.25107 10.87333 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.002628 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.468157 B =10650.622259 C =12591.230514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.732 5.732 14 C 0.143 3.857 15 C 0.017 3.983 16 H 0.086 0.914 17 C -0.135 4.135 18 C -0.002 4.002 19 N -0.464 5.464 20 C 0.058 3.942 21 C -0.107 4.107 22 C -0.072 4.072 23 C -0.127 4.127 24 C -0.093 4.093 25 C -0.156 4.156 26 C 0.101 3.899 27 F -0.139 7.139 28 H 0.268 0.732 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.393 0.607 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.142 -21.772 -4.290 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.387 5.387 14 C 0.018 3.982 15 C -0.092 4.092 16 H 0.104 0.896 17 C -0.173 4.173 18 C -0.131 4.131 19 N -0.186 5.186 20 C -0.070 4.070 21 C -0.109 4.109 22 C -0.091 4.091 23 C -0.146 4.146 24 C -0.111 4.111 25 C -0.175 4.175 26 C 0.082 3.918 27 F -0.118 7.118 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.228 0.772 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.775 -21.624 -4.793 27.192 hybrid contribution 2.899 0.735 0.736 3.080 sum 18.673 -20.889 -4.057 28.311 Atomic orbital electron populations 1.70021 1.05948 1.27420 1.46905 1.24992 0.95020 0.99007 0.94584 0.86175 0.79407 0.81616 0.78338 1.20272 1.20769 1.19712 1.22868 0.94885 0.91703 1.58867 0.90978 1.85406 1.04958 0.96242 1.96693 1.23524 1.06521 0.95560 1.04741 1.20279 0.86536 0.86251 0.75231 1.90699 1.15341 1.85596 1.47694 1.45895 1.09697 1.05393 1.77675 1.21178 0.94317 0.80121 1.02535 1.23782 0.95027 0.95914 0.94499 0.89645 1.23348 0.98320 0.95691 0.99970 1.24110 0.97260 0.89331 1.02361 1.68778 1.07682 1.12056 1.30130 1.21576 0.90053 1.01682 0.93676 1.19700 0.98431 0.93219 0.99520 1.21041 0.96856 0.96911 0.94299 1.21279 0.96721 0.99144 0.97407 1.21041 0.98920 0.91989 0.99178 1.21111 1.00277 0.99853 0.96252 1.17549 0.99027 0.81675 0.93564 1.91445 1.94721 1.46673 1.78954 0.92200 0.89418 0.89330 0.77243 0.90934 0.91141 0.90515 0.88559 0.90209 0.89475 0.89364 0.92684 0.84643 0.85072 0.85084 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -15.28 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.53 10.13 7.85 -10.99 -0.09 10.05 16 12 O -0.52 -12.02 15.86 5.56 0.09 -11.93 16 13 N -0.73 -10.17 5.48 -60.29 -0.33 -10.50 16 14 C 0.14 1.72 5.83 -4.04 -0.02 1.70 16 15 C 0.02 0.15 3.44 -66.66 -0.23 -0.08 16 16 H 0.09 0.67 7.89 -51.93 -0.41 0.26 16 17 C -0.14 -1.03 7.84 -25.79 -0.20 -1.23 16 18 C 0.00 -0.02 6.42 -2.57 -0.02 -0.03 16 19 N -0.46 -4.41 5.85 -231.03 -1.35 -5.76 16 20 C 0.06 0.51 4.59 -4.98 -0.02 0.49 16 21 C -0.11 -0.99 5.33 -104.55 -0.56 -1.55 16 22 C -0.07 -0.64 9.67 -39.59 -0.38 -1.02 16 23 C -0.13 -0.98 10.04 -39.58 -0.40 -1.38 16 24 C -0.09 -0.66 10.04 -39.59 -0.40 -1.05 16 25 C -0.16 -1.22 10.03 -39.51 -0.40 -1.61 16 26 C 0.10 0.93 6.87 -39.42 -0.27 0.66 16 27 F -0.14 -1.30 13.83 2.25 0.03 -1.27 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.39 4.51 6.43 -40.82 -0.26 4.25 16 32 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.77 7.92 -51.93 -0.41 0.36 16 36 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.72 6.29 -51.93 -0.33 0.39 16 39 H 0.06 0.45 7.42 -51.93 -0.39 0.07 16 40 H 0.14 1.11 8.05 -52.49 -0.42 0.69 16 41 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -34.80 373.59 -10.86 -45.66 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.86 Total: 2.14 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.56 Total: -10.96 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.95 Total: -41.81 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.03 Total: -1.27 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.80 -10.86 -45.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723402257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.495 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds