Wall clock time and date at job start Tue Mar 31 2020 20:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00247 * 2 1 4 4 H 1.48500 * 109.47056 * 270.00383 * 3 2 1 5 5 H 1.48506 * 109.46718 * 30.00386 * 3 2 1 6 6 H 1.48495 * 109.47034 * 150.00083 * 3 2 1 7 7 C 1.38801 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99699 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99803 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46930 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99617 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99664 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99783 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47298 * 179.97438 * 14 13 11 16 16 H 1.09002 * 112.95602 * 74.66817 * 15 14 13 17 17 C 1.53930 * 113.75961 * 206.31406 * 15 14 13 18 18 C 1.53938 * 86.33835 * 138.14959 * 17 15 14 19 19 N 1.47959 * 113.75963 * 303.02641 * 15 14 13 20 20 C 1.46895 * 111.00486 * 107.98781 * 19 15 14 21 21 C 1.50702 * 109.47434 * 176.17274 * 20 19 15 22 22 C 1.38222 * 120.01274 * 98.07211 * 21 20 19 23 23 C 1.38219 * 120.02290 * 179.97438 * 22 21 20 24 24 C 1.38265 * 120.05156 * 359.97438 * 23 22 21 25 25 C 1.38177 * 120.02694 * 0.04790 * 24 23 22 26 26 C 1.38438 * 120.00764 * 277.79989 * 21 20 19 27 27 F 1.35101 * 120.03013 * 359.97438 * 26 21 20 28 28 H 0.97006 * 120.00095 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.46959 * 59.99954 * 10 9 7 30 30 H 1.09001 * 109.47009 * 299.99743 * 10 9 7 31 31 H 0.97000 * 120.00303 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.47115 * 60.00180 * 14 13 11 33 33 H 1.09005 * 109.47019 * 300.00548 * 14 13 11 34 34 H 1.09001 * 113.73680 * 252.50867 * 17 15 14 35 35 H 1.08999 * 113.73719 * 23.68967 * 17 15 14 36 36 H 1.09000 * 113.75709 * 90.60004 * 18 17 15 37 37 H 1.09000 * 113.75827 * 221.85044 * 18 17 15 38 38 H 1.09003 * 109.46899 * 296.16871 * 20 19 15 39 39 H 1.08995 * 109.47170 * 56.16916 * 20 19 15 40 40 H 1.07995 * 119.98747 * 359.96090 * 22 21 20 41 41 H 1.08003 * 119.97431 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.98757 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.01135 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9873 -5.3028 -0.0030 12 8 0.7910 -5.5023 -0.0030 13 7 2.8441 -6.3431 -0.0037 14 6 2.3303 -7.7151 -0.0040 15 6 3.5023 -8.6986 -0.0054 16 1 3.9994 -8.7691 0.9621 17 6 3.1651 -10.0643 -0.6304 18 6 4.5460 -9.9854 -1.3060 19 7 4.4324 -8.5159 -1.1415 20 6 5.7042 -7.9339 -0.6924 21 6 6.6573 -7.8500 -1.8567 22 6 6.8052 -6.6604 -2.5448 23 6 7.6797 -6.5831 -3.6124 24 6 8.4078 -7.6951 -3.9930 25 6 8.2613 -8.8856 -3.3069 26 6 7.3892 -8.9629 -2.2340 27 9 7.2499 -10.1246 -1.5584 28 1 -0.4850 0.8401 0.0004 29 1 3.1251 -3.7318 0.8874 30 1 3.1237 -3.7310 -0.8926 31 1 3.8008 -6.1835 -0.0033 32 1 1.7213 -7.8749 -0.8938 33 1 1.7220 -7.8755 0.8862 34 1 3.0784 -10.8707 0.0979 35 1 2.3301 -10.0324 -1.3302 36 1 5.3483 -10.4323 -0.7188 37 1 4.5459 -10.3140 -2.3452 38 1 5.5264 -6.9343 -0.2957 39 1 6.1364 -8.5623 0.0864 40 1 6.2372 -5.7911 -2.2482 41 1 7.7950 -5.6530 -4.1492 42 1 9.0911 -7.6334 -4.8271 43 1 8.8298 -9.7542 -3.6047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723402257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:47 Heat of formation + Delta-G solvation = -45.022339 kcal Electronic energy + Delta-G solvation = -26126.036853 eV Core-core repulsion = 22211.893229 eV Total energy + Delta-G solvation = -3914.143624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.96006 -41.42379 -40.30419 -39.63796 -35.60751 -34.57371 -33.96690 -31.58299 -31.41438 -29.92083 -28.70801 -27.61511 -25.58557 -24.34594 -23.64208 -22.26279 -21.77630 -20.68976 -19.80783 -18.61729 -17.92659 -17.52398 -17.41604 -17.27883 -16.87068 -16.77597 -16.64127 -16.21016 -15.86862 -15.80266 -15.36733 -14.96420 -14.64635 -14.49403 -14.40233 -14.34861 -13.99393 -13.57098 -13.34799 -13.15757 -13.03619 -12.89174 -12.85039 -12.62606 -12.57447 -12.41070 -11.94268 -11.79289 -11.72958 -11.67698 -11.13338 -10.93728 -10.26614 -10.10326 -9.97855 -9.83219 -9.56607 -8.65749 -8.33598 -6.11674 0.18004 0.26949 1.27647 1.43403 1.47824 1.58208 1.63478 2.23246 2.29017 2.57367 2.95888 3.00545 3.27672 3.33505 3.43443 3.65451 3.68021 3.82097 3.95915 4.02802 4.08397 4.25052 4.28032 4.30395 4.36366 4.39879 4.41635 4.50061 4.54291 4.67484 4.76641 4.86736 4.93192 4.95573 5.11140 5.12778 5.19409 5.28829 5.40753 5.42722 5.48615 5.50612 5.94039 6.00057 6.20834 6.49278 7.07590 7.24881 8.75684 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.002628 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.468157 B =10650.622259 C =12591.230514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.566 6.566 13 N -0.706 5.706 14 C 0.142 3.858 15 C 0.024 3.976 16 H 0.104 0.896 17 C -0.127 4.127 18 C 0.003 3.997 19 N -0.481 5.481 20 C 0.059 3.941 21 C -0.120 4.120 22 C -0.089 4.089 23 C -0.133 4.133 24 C -0.092 4.092 25 C -0.161 4.161 26 C 0.084 3.916 27 F -0.144 7.144 28 H 0.271 0.729 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.408 0.592 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.157 0.843 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.955 -22.133 -4.491 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.280 4.280 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.360 5.360 14 C 0.018 3.982 15 C -0.085 4.085 16 H 0.122 0.878 17 C -0.165 4.165 18 C -0.125 4.125 19 N -0.205 5.205 20 C -0.069 4.069 21 C -0.121 4.121 22 C -0.107 4.107 23 C -0.151 4.151 24 C -0.110 4.110 25 C -0.180 4.180 26 C 0.065 3.935 27 F -0.123 7.123 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.245 0.755 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.175 0.825 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 18.643 -22.027 -4.996 29.287 hybrid contribution 2.096 0.718 0.751 2.339 sum 20.739 -21.309 -4.245 30.037 Atomic orbital electron populations 1.70188 1.08004 1.28597 1.48050 1.26139 0.95965 1.03343 0.93756 0.84948 0.78214 0.75972 0.78808 1.19279 1.20363 1.18110 1.23202 0.95345 0.91956 1.58812 0.89881 1.85594 1.10517 0.99203 1.97033 1.23362 1.03573 0.94445 1.06620 1.20069 0.86240 0.86682 0.75200 1.90687 1.17339 1.86100 1.50359 1.45673 1.09903 1.05200 1.75237 1.21317 0.95720 0.79324 1.01828 1.23740 0.93954 0.95440 0.95364 0.87850 1.23322 0.97715 0.95433 1.00038 1.24055 0.97763 0.88590 1.02124 1.68748 1.08254 1.12970 1.30482 1.21588 0.89706 1.01863 0.93757 1.19805 0.98828 0.93512 0.99940 1.21198 0.97575 0.96955 0.94995 1.21556 0.96322 1.00135 0.97099 1.21372 0.98810 0.91354 0.99512 1.21401 0.99957 1.00832 0.95769 1.17758 0.99834 0.81622 0.94294 1.91425 1.94838 1.46859 1.79146 0.92008 0.87286 0.87418 0.75475 0.92434 0.91149 0.88460 0.89140 0.89669 0.90193 0.89040 0.92182 0.84530 0.83555 0.82532 0.83308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.27 13.22 21.65 0.29 -55.98 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.55 -31.19 9.50 67.95 0.65 -30.54 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 11 C 0.53 20.15 7.85 87.66 0.69 20.84 16 12 O -0.57 -26.82 15.86 -3.03 -0.05 -26.86 16 13 N -0.71 -18.74 5.48 -463.05 -2.54 -21.28 16 14 C 0.14 3.28 5.83 86.38 0.50 3.78 16 15 C 0.02 0.39 3.44 45.02 0.15 0.54 16 16 H 0.10 1.33 7.89 -2.39 -0.02 1.31 16 17 C -0.13 -1.70 7.84 31.24 0.24 -1.46 16 18 C 0.00 0.04 6.42 86.34 0.55 0.60 16 19 N -0.48 -8.44 5.85 -884.86 -5.17 -13.62 16 20 C 0.06 0.94 4.59 85.56 0.39 1.33 16 21 C -0.12 -2.07 5.33 -19.82 -0.11 -2.18 16 22 C -0.09 -1.46 9.67 22.26 0.22 -1.25 16 23 C -0.13 -1.83 10.04 22.27 0.22 -1.60 16 24 C -0.09 -1.11 10.04 22.26 0.22 -0.88 16 25 C -0.16 -2.23 10.03 22.31 0.22 -2.01 16 26 C 0.08 1.45 6.87 22.38 0.15 1.60 16 27 F -0.14 -2.53 13.83 44.97 0.62 -1.91 16 28 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 29 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 30 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 31 H 0.41 8.53 6.43 -92.71 -0.60 7.94 16 32 H 0.06 1.54 7.87 -2.39 -0.02 1.52 16 33 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.35 7.92 -2.39 -0.02 1.33 16 36 H 0.09 1.21 5.93 -2.39 -0.01 1.19 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.33 6.29 -2.39 -0.02 1.31 16 39 H 0.06 0.88 7.42 -2.39 -0.02 0.87 16 40 H 0.14 2.10 8.05 -2.91 -0.02 2.07 16 41 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 43 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -77.16 373.59 -0.53 -77.69 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.44 Total: 20.80 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 5.02 Total: -14.77 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -7.43 Total: -90.88 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.62 Total: -1.91 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -77.16 -0.53 -77.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723402257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.663 kcal (2) G-P(sol) polarization free energy of solvation -77.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds