Wall clock time and date at job start Tue Mar 31 2020 20:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99885 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00405 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00228 * 3 2 1 7 7 C 1.38803 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 180.27695 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.74993 * 284.23281 * 15 14 13 17 17 C 1.53504 * 113.47929 * 153.37643 * 15 14 13 18 18 C 1.53515 * 83.57973 * 219.21491 * 17 15 14 19 19 N 1.47484 * 87.92973 * 26.02556 * 18 17 15 20 20 C 1.46896 * 110.99657 * 221.30071 * 19 18 17 21 21 C 1.50708 * 109.47081 * 265.97020 * 20 19 18 22 22 C 1.38218 * 120.01038 * 259.73074 * 21 20 19 23 23 C 1.38222 * 120.02054 * 179.72110 * 22 21 20 24 24 C 1.38266 * 120.05466 * 0.55035 * 23 22 21 25 25 C 1.38179 * 120.02107 * 359.72390 * 24 23 22 26 26 C 1.38433 * 120.01000 * 80.00189 * 21 20 19 27 27 F 1.35094 * 120.02863 * 359.97438 * 26 21 20 28 28 H 0.97005 * 119.99878 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 30 30 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 31 31 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 32 32 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 33 33 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 34 34 H 1.09009 * 114.17504 * 332.86085 * 17 15 14 35 35 H 1.09003 * 114.17378 * 105.56917 * 17 15 14 36 36 H 1.09004 * 113.47167 * 271.25906 * 18 17 15 37 37 H 1.08995 * 113.53046 * 140.80264 * 18 17 15 38 38 H 1.08999 * 109.48074 * 25.97034 * 20 19 18 39 39 H 1.09005 * 109.47105 * 145.97600 * 20 19 18 40 40 H 1.07997 * 119.98857 * 359.97438 * 22 21 20 41 41 H 1.08006 * 119.97285 * 180.25051 * 23 22 21 42 42 H 1.08001 * 119.98928 * 179.74456 * 24 23 22 43 43 H 1.08005 * 120.00563 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2021 0.0068 10 6 4.0865 -2.9846 0.0117 11 6 5.5729 -3.2327 0.0178 12 8 6.3439 -2.2965 0.0192 13 7 6.0455 -4.4948 0.0216 14 6 7.4905 -4.7360 0.0281 15 6 7.7562 -6.2427 0.0321 16 1 7.5819 -6.6989 1.0066 17 6 9.1045 -6.6276 -0.5925 18 6 8.3045 -7.8016 -1.1743 19 7 7.0986 -6.9581 -1.0775 20 6 5.9496 -7.7358 -0.5949 21 6 5.1612 -8.2502 -1.7717 22 6 4.0055 -7.6026 -2.1658 23 6 3.2853 -8.0708 -3.2487 24 6 3.7138 -9.1939 -3.9319 25 6 4.8658 -9.8463 -3.5361 26 6 5.5912 -9.3748 -2.4549 27 9 6.7180 -10.0115 -2.0675 28 1 -0.4850 0.8401 0.0004 29 1 3.6398 -3.4299 0.9007 30 1 3.6473 -3.4334 -0.8793 31 1 5.4288 -5.2436 0.0209 32 1 7.9372 -4.2903 -0.8607 33 1 7.9297 -4.2875 0.9193 34 1 9.4683 -5.9218 -1.3394 35 1 9.8645 -6.9209 0.1318 36 1 8.2775 -8.6743 -0.5217 37 1 8.5795 -8.0501 -2.1992 38 1 6.3044 -8.5771 0.0004 39 1 5.3123 -7.0994 0.0192 40 1 3.6673 -6.7280 -1.6300 41 1 2.3846 -7.5617 -3.5585 42 1 3.1480 -9.5613 -4.7754 43 1 5.2005 -10.7233 -4.0702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723402258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:51 Heat of formation + Delta-G solvation = -19.155910 kcal Electronic energy + Delta-G solvation = -26313.945796 eV Core-core repulsion = 22400.923825 eV Total energy + Delta-G solvation = -3913.021971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.19251 -40.88374 -39.18001 -38.86208 -34.39648 -33.36463 -32.43162 -30.83305 -30.23169 -29.28635 -27.60169 -25.59923 -25.01200 -23.44914 -22.92865 -21.63735 -20.51743 -20.02073 -17.97272 -17.85930 -16.86377 -16.65826 -16.49352 -16.30877 -15.93302 -15.70069 -15.20821 -15.01053 -14.93546 -14.60771 -14.29831 -13.80462 -13.74410 -13.57130 -13.42422 -13.21045 -12.78889 -12.69821 -12.53958 -12.17403 -12.00316 -11.89131 -11.76396 -11.34481 -11.26185 -11.13156 -11.00037 -10.90712 -10.56816 -9.84860 -9.52541 -9.36199 -9.20365 -9.00256 -8.92594 -8.88537 -8.48413 -6.90371 -6.28443 -3.99733 0.85209 0.92956 2.77636 3.03038 3.18520 3.32095 3.35183 3.51571 3.59927 3.78264 3.95825 4.03728 4.28887 4.32672 4.34222 4.49911 4.59632 4.72389 4.80300 4.83066 4.90089 4.94161 5.00604 5.06688 5.10817 5.15281 5.32531 5.36447 5.43474 5.53708 5.57829 5.73759 5.75370 5.77461 5.79954 5.85537 5.93775 6.01391 6.06520 6.15495 6.57993 6.58999 6.64669 7.65272 7.94650 8.41773 8.54118 9.17988 10.80783 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002825 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.690242 B = 9908.720099 C =11757.679981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.521 6.521 13 N -0.730 5.730 14 C 0.141 3.859 15 C 0.013 3.987 16 H 0.085 0.915 17 C -0.135 4.135 18 C 0.001 3.999 19 N -0.457 5.457 20 C 0.056 3.944 21 C -0.106 4.106 22 C -0.075 4.075 23 C -0.126 4.126 24 C -0.093 4.093 25 C -0.157 4.157 26 C 0.103 3.897 27 F -0.140 7.140 28 H 0.270 0.730 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.394 0.606 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.858 -23.480 -3.597 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.274 4.274 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.385 5.385 14 C 0.016 3.984 15 C -0.097 4.097 16 H 0.103 0.897 17 C -0.173 4.173 18 C -0.128 4.128 19 N -0.179 5.179 20 C -0.072 4.072 21 C -0.107 4.107 22 C -0.093 4.093 23 C -0.144 4.144 24 C -0.111 4.111 25 C -0.176 4.176 26 C 0.084 3.916 27 F -0.119 7.119 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.229 0.771 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.741 -21.479 -4.141 26.378 hybrid contribution -0.865 -1.410 0.675 1.786 sum 13.876 -22.889 -3.466 26.990 Atomic orbital electron populations 1.69941 1.05917 1.27747 1.48161 1.24710 0.94444 0.98958 0.93181 0.86739 0.81916 0.83275 0.79954 1.19197 1.19977 1.15887 1.22322 0.88337 0.97501 1.58698 0.89427 1.84801 1.09164 1.00066 1.97404 1.23272 0.94186 1.04386 1.05601 1.20252 0.90530 0.82323 0.75343 1.90696 1.58754 1.42183 1.47897 1.45871 1.07416 1.07781 1.77404 1.21244 0.81836 0.92732 1.02553 1.23734 0.95285 0.95580 0.95056 0.89668 1.23187 0.95264 0.98340 1.00513 1.23847 0.90871 0.95484 1.02580 1.69054 1.01512 1.16642 1.30687 1.21628 0.94161 0.97589 0.93807 1.19645 0.97082 0.95144 0.98828 1.21023 0.93230 0.98703 0.96357 1.21293 1.00611 0.96715 0.95772 1.21045 0.95390 0.95187 0.99462 1.21111 0.96885 1.02173 0.97388 1.17522 0.84583 0.93190 0.96327 1.91465 1.48959 1.81050 1.90433 0.91961 0.88661 0.88619 0.77117 0.90886 0.91180 0.88298 0.90113 0.90958 0.89569 0.92141 0.89644 0.84811 0.84958 0.85072 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.83 27.74 -169.99 -4.72 17.11 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.23 -5.98 6.73 56.52 0.38 -5.60 16 7 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.58 18.54 -107.50 -1.99 -5.57 16 10 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 11 C 0.53 9.54 7.85 -10.99 -0.09 9.45 16 12 O -0.52 -11.38 15.86 5.56 0.09 -11.29 16 13 N -0.73 -9.59 5.46 -60.29 -0.33 -9.92 16 14 C 0.14 1.59 5.81 -4.04 -0.02 1.57 16 15 C 0.01 0.11 3.23 -71.43 -0.23 -0.12 16 16 H 0.09 0.61 7.91 -51.93 -0.41 0.20 16 17 C -0.13 -0.94 8.00 -26.20 -0.21 -1.15 16 18 C 0.00 0.01 6.30 -7.54 -0.05 -0.04 16 19 N -0.46 -4.18 5.88 -237.92 -1.40 -5.58 16 20 C 0.06 0.48 4.48 -4.97 -0.02 0.46 16 21 C -0.11 -1.01 5.47 -104.55 -0.57 -1.58 16 22 C -0.07 -0.70 9.67 -39.59 -0.38 -1.08 16 23 C -0.13 -1.08 10.04 -39.58 -0.40 -1.48 16 24 C -0.09 -0.72 10.04 -39.59 -0.40 -1.12 16 25 C -0.16 -1.32 10.03 -39.51 -0.40 -1.72 16 26 C 0.10 1.00 7.22 -39.42 -0.28 0.72 16 27 F -0.14 -1.38 15.08 2.25 0.03 -1.35 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 31 H 0.39 4.29 6.22 -40.82 -0.25 4.04 16 32 H 0.07 0.93 7.88 -51.92 -0.41 0.52 16 33 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 34 H 0.10 0.73 7.94 -51.92 -0.41 0.32 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.51 7.24 -51.93 -0.38 0.14 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.48 7.11 -51.93 -0.37 0.11 16 39 H 0.09 0.66 6.13 -51.93 -0.32 0.34 16 40 H 0.13 1.16 8.03 -52.49 -0.42 0.74 16 41 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -34.38 373.01 -10.46 -44.85 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.93 Total: 2.14 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -2.61 Total: -10.25 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: -0.95 Total: -41.26 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.03 Total: -1.35 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.38 -10.46 -44.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723402258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.690 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds