Wall clock time and date at job start Tue Mar 31 2020 20:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99885 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00405 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00228 * 3 2 1 7 7 C 1.38803 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 180.27695 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.74993 * 284.23281 * 15 14 13 17 17 C 1.53504 * 113.47929 * 153.37643 * 15 14 13 18 18 C 1.53515 * 83.57973 * 219.21491 * 17 15 14 19 19 N 1.47484 * 87.92973 * 26.02556 * 18 17 15 20 20 C 1.46896 * 110.99657 * 221.30071 * 19 18 17 21 21 C 1.50708 * 109.47081 * 265.97020 * 20 19 18 22 22 C 1.38218 * 120.01038 * 259.73074 * 21 20 19 23 23 C 1.38222 * 120.02054 * 179.72110 * 22 21 20 24 24 C 1.38266 * 120.05466 * 0.55035 * 23 22 21 25 25 C 1.38179 * 120.02107 * 359.72390 * 24 23 22 26 26 C 1.38433 * 120.01000 * 80.00189 * 21 20 19 27 27 F 1.35094 * 120.02863 * 359.97438 * 26 21 20 28 28 H 0.97005 * 119.99878 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 30 30 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 31 31 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 32 32 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 33 33 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 34 34 H 1.09009 * 114.17504 * 332.86085 * 17 15 14 35 35 H 1.09003 * 114.17378 * 105.56917 * 17 15 14 36 36 H 1.09004 * 113.47167 * 271.25906 * 18 17 15 37 37 H 1.08995 * 113.53046 * 140.80264 * 18 17 15 38 38 H 1.08999 * 109.48074 * 25.97034 * 20 19 18 39 39 H 1.09005 * 109.47105 * 145.97600 * 20 19 18 40 40 H 1.07997 * 119.98857 * 359.97438 * 22 21 20 41 41 H 1.08006 * 119.97285 * 180.25051 * 23 22 21 42 42 H 1.08001 * 119.98928 * 179.74456 * 24 23 22 43 43 H 1.08005 * 120.00563 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2021 0.0068 10 6 4.0865 -2.9846 0.0117 11 6 5.5729 -3.2327 0.0178 12 8 6.3439 -2.2965 0.0192 13 7 6.0455 -4.4948 0.0216 14 6 7.4905 -4.7360 0.0281 15 6 7.7562 -6.2427 0.0321 16 1 7.5819 -6.6989 1.0066 17 6 9.1045 -6.6276 -0.5925 18 6 8.3045 -7.8016 -1.1743 19 7 7.0986 -6.9581 -1.0775 20 6 5.9496 -7.7358 -0.5949 21 6 5.1612 -8.2502 -1.7717 22 6 4.0055 -7.6026 -2.1658 23 6 3.2853 -8.0708 -3.2487 24 6 3.7138 -9.1939 -3.9319 25 6 4.8658 -9.8463 -3.5361 26 6 5.5912 -9.3748 -2.4549 27 9 6.7180 -10.0115 -2.0675 28 1 -0.4850 0.8401 0.0004 29 1 3.6398 -3.4299 0.9007 30 1 3.6473 -3.4334 -0.8793 31 1 5.4288 -5.2436 0.0209 32 1 7.9372 -4.2903 -0.8607 33 1 7.9297 -4.2875 0.9193 34 1 9.4683 -5.9218 -1.3394 35 1 9.8645 -6.9209 0.1318 36 1 8.2775 -8.6743 -0.5217 37 1 8.5795 -8.0501 -2.1992 38 1 6.3044 -8.5771 0.0004 39 1 5.3123 -7.0994 0.0192 40 1 3.6673 -6.7280 -1.6300 41 1 2.3846 -7.5617 -3.5585 42 1 3.1480 -9.5613 -4.7754 43 1 5.2005 -10.7233 -4.0702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723402258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:50 Heat of formation + Delta-G solvation = -42.724329 kcal Electronic energy + Delta-G solvation = -26314.967800 eV Core-core repulsion = 22400.923825 eV Total energy + Delta-G solvation = -3914.043975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.89942 -41.61579 -40.34785 -39.69672 -35.62431 -34.66202 -34.02616 -31.62788 -31.43668 -29.99525 -28.66262 -27.80928 -25.64216 -24.23529 -23.62504 -22.30562 -21.81144 -20.76368 -19.86562 -18.58908 -17.97147 -17.50669 -17.45551 -17.27284 -17.07523 -16.75889 -16.62585 -16.26300 -15.84456 -15.71256 -15.32102 -15.04114 -14.90240 -14.63682 -14.45729 -14.35803 -14.07742 -13.65408 -13.35421 -13.33407 -13.07614 -12.96352 -12.78955 -12.68758 -12.62107 -12.43197 -11.96302 -11.87317 -11.76753 -11.61343 -11.16440 -10.96936 -10.52513 -10.13426 -10.01096 -9.85815 -9.59545 -8.98662 -8.50854 -6.21315 0.19037 0.26735 0.99456 1.32054 1.47552 1.56094 1.58513 2.20260 2.26365 2.57449 2.72368 2.87565 3.04392 3.29310 3.40918 3.64278 3.67406 3.82748 3.91019 3.98846 4.07087 4.21193 4.22183 4.28611 4.34258 4.39620 4.41641 4.45417 4.51931 4.65964 4.78399 4.86652 4.93277 4.98245 5.10288 5.12079 5.19157 5.27435 5.39529 5.47242 5.50689 5.71612 5.94289 6.00776 6.12212 6.44396 6.94601 7.19058 8.61481 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002825 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.690242 B = 9908.720099 C =11757.679981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.174 6.174 10 C -0.111 4.111 11 C 0.533 3.467 12 O -0.563 6.563 13 N -0.706 5.706 14 C 0.140 3.860 15 C 0.020 3.980 16 H 0.105 0.895 17 C -0.125 4.125 18 C 0.004 3.996 19 N -0.476 5.476 20 C 0.057 3.943 21 C -0.115 4.115 22 C -0.091 4.091 23 C -0.135 4.135 24 C -0.093 4.093 25 C -0.161 4.161 26 C 0.086 3.914 27 F -0.144 7.144 28 H 0.277 0.723 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.408 0.592 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.155 0.845 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.039 -24.686 -3.545 29.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.160 1.160 7 C -0.675 4.675 8 H 0.081 0.919 9 S 0.052 5.948 10 C -0.262 4.262 11 C 0.319 3.681 12 O -0.442 6.442 13 N -0.360 5.360 14 C 0.015 3.985 15 C -0.089 4.089 16 H 0.122 0.878 17 C -0.163 4.163 18 C -0.124 4.124 19 N -0.199 5.199 20 C -0.071 4.071 21 C -0.116 4.116 22 C -0.110 4.110 23 C -0.153 4.153 24 C -0.111 4.111 25 C -0.180 4.180 26 C 0.066 3.934 27 F -0.123 7.123 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.245 0.755 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.173 0.827 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 15.920 -22.743 -4.089 28.061 hybrid contribution -1.226 -1.227 0.612 1.839 sum 14.694 -23.970 -3.477 28.330 Atomic orbital electron populations 1.70014 1.07266 1.28993 1.49210 1.25541 0.95251 1.02181 0.92916 0.85890 0.80730 0.79704 0.80201 1.18754 1.18356 1.16040 1.22460 0.90216 0.96701 1.58164 0.91864 1.84731 1.06448 1.06050 1.97567 1.23262 0.95916 0.99739 1.07276 1.19963 0.89432 0.83351 0.75374 1.90685 1.59306 1.43750 1.50417 1.45687 1.08814 1.06465 1.75031 1.21404 0.80005 0.95058 1.01984 1.23734 0.96069 0.93209 0.95896 0.87768 1.23168 0.95071 0.97535 1.00545 1.23824 0.90376 0.95897 1.02346 1.69025 1.02200 1.17449 1.31240 1.21651 0.94006 0.97868 0.93577 1.19793 0.97299 0.95274 0.99276 1.21182 0.93637 0.99133 0.96999 1.21544 1.00976 0.97126 0.95681 1.21348 0.95256 0.94677 0.99854 1.21395 0.96870 1.02670 0.97071 1.17743 0.84887 0.93644 0.97084 1.91448 1.49173 1.81129 1.90551 0.91381 0.86854 0.87083 0.75531 0.92282 0.90978 0.88937 0.87919 0.90039 0.90513 0.91455 0.89109 0.84603 0.83949 0.82689 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.66 13.97 21.65 0.30 -55.36 16 2 C 0.05 2.73 5.50 84.86 0.47 3.19 16 3 Si 0.91 45.01 27.74 68.60 1.90 46.92 16 4 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.24 -11.65 6.73 99.48 0.67 -10.98 16 7 C -0.53 -30.61 10.04 67.96 0.68 -29.93 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.17 -8.83 18.54 -56.49 -1.05 -9.88 16 10 C -0.11 -4.18 6.16 71.23 0.44 -3.74 16 11 C 0.53 18.58 7.85 87.66 0.69 19.27 16 12 O -0.56 -24.31 15.86 -3.02 -0.05 -24.36 16 13 N -0.71 -17.30 5.46 -463.06 -2.53 -19.83 16 14 C 0.14 2.92 5.81 86.38 0.50 3.42 16 15 C 0.02 0.29 3.23 42.19 0.14 0.42 16 16 H 0.10 1.14 7.91 -2.39 -0.02 1.12 16 17 C -0.13 -1.45 8.00 30.94 0.25 -1.20 16 18 C 0.00 0.06 6.30 83.58 0.53 0.58 16 19 N -0.48 -7.87 5.88 -906.64 -5.33 -13.20 16 20 C 0.06 0.87 4.48 85.56 0.38 1.26 16 21 C -0.12 -2.08 5.47 -19.82 -0.11 -2.19 16 22 C -0.09 -1.63 9.67 22.26 0.22 -1.41 16 23 C -0.14 -2.18 10.04 22.27 0.22 -1.96 16 24 C -0.09 -1.31 10.04 22.26 0.22 -1.09 16 25 C -0.16 -2.50 10.03 22.31 0.22 -2.27 16 26 C 0.09 1.57 7.22 22.37 0.16 1.74 16 27 F -0.14 -2.68 15.08 44.97 0.68 -2.00 16 28 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 29 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 30 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 31 H 0.41 7.98 6.22 -92.71 -0.58 7.40 16 32 H 0.06 1.44 7.88 -2.38 -0.02 1.42 16 33 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.09 1.22 7.94 -2.38 -0.02 1.20 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.97 7.24 -2.38 -0.02 0.95 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 0.93 7.11 -2.39 -0.02 0.91 16 39 H 0.09 1.23 6.13 -2.38 -0.01 1.21 16 40 H 0.14 2.25 8.03 -2.91 -0.02 2.22 16 41 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 43 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -74.15 373.01 -0.65 -74.80 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.42 Total: 16.85 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 5.01 Total: -13.93 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -7.56 Total: -88.39 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.68 Total: -2.00 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Total: -74.15 -0.65 -74.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723402258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.073 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds